Strain Fitness in Sphingobium sp. HT1-2 around GFF2400

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,420,028	+		GFF2398	0.57	+1.3
2,420,031	-		GFF2398	0.58	+0.6
2,420,031	-		GFF2398	0.58	+0.2
2,420,033	+		GFF2398	0.58	+0.3
2,420,041	+		GFF2398	0.59	-0.0
2,420,065	-		GFF2398	0.62	-0.9
2,420,065	-		GFF2398	0.62	-0.3
2,420,072	+		GFF2398	0.63	-2.2
2,420,084	-		GFF2398	0.64	-1.8
2,420,084	-		GFF2398	0.64	-0.4
2,420,100	+		GFF2398	0.66	-0.2
2,420,128	-		GFF2398	0.70	-1.4
2,420,229	+		GFF2398	0.83	-0.7
2,420,279	+		GFF2398	0.89	+0.4
2,420,279	+		GFF2398	0.89	-0.6
2,420,287	-				-0.7
2,420,287	-				+0.2
2,420,287	-				+0.2
2,420,300	+				-0.6
2,420,324	-				+0.3
2,420,324	-				+0.2
2,420,331	+				-0.1
2,420,339	-				+0.4
2,420,344	-				+1.8
2,420,344	-				-0.6
2,420,357	+				-1.8
2,420,359	+				-1.3
2,420,359	+				-0.9
2,420,375	+				+0.1
2,420,375	+				-2.1
2,420,394	+				-0.3
2,420,395	+				-1.9
2,420,395	+				-0.0
2,420,395	+				+0.3
2,420,395	+				-1.5
2,420,403	-				+0.1
2,420,403	-				-1.1
2,420,403	-				+0.7
2,420,403	-				+1.2
2,420,420	+				+0.6
2,420,456	-				+0.2
2,420,487	-				+0.8
2,420,493	+				-2.4
2,420,493	+				-0.9
2,420,501	-				+1.1
2,420,522	-				-1.1
2,421,004	-				-0.5
2,421,010	+				+0.3
2,421,010	+				-0.8
2,421,012	+				-1.1
2,421,012	+				+0.2
2,421,012	+				+0.5
2,421,012	+				-0.1
2,421,020	-				-0.6
2,421,020	-				-0.7
2,421,037	+				-0.0
2,421,040	-				-1.5
2,421,045	-				-0.1
2,421,045	-				+0.5
2,421,049	-				-0.3
2,421,062	-				+0.7
2,421,064	-				-0.1
2,421,074	+				-1.0
2,421,074	+				-0.8
2,421,074	+				+0.3
2,421,074	+				+1.1
2,421,074	+				-0.1
2,421,074	+				-0.5
2,421,077	-				+0.7
2,421,082	-				+0.1
2,421,082	-				+0.7
2,421,082	-				-0.2
2,421,082	-				-1.7
2,421,082	-				-0.8
2,421,082	-				+1.0
2,421,082	-				+0.7
2,421,082	-				+0.6
2,421,082	-				-0.5
2,421,082	-				-1.6
2,421,082	-				+0.2
2,421,082	-				-0.9
2,421,082	-				-0.6
2,421,082	-				-0.9
2,421,087	-				+0.4
2,421,105	+		GFF2400	0.12	+1.0
2,421,108	-		GFF2400	0.12	+1.5
2,421,122	+		GFF2400	0.14	+0.2
2,421,122	+		GFF2400	0.14	-1.9
2,421,125	-		GFF2400	0.14	-1.3
2,421,126	-		GFF2400	0.14	-0.3
2,421,130	-		GFF2400	0.15	-0.3
2,421,130	-		GFF2400	0.15	-2.0
2,421,130	-		GFF2400	0.15	+1.1
2,421,130	-		GFF2400	0.15	-2.3
2,421,130	-		GFF2400	0.15	-0.5
2,421,130	-		GFF2400	0.15	+1.2
2,421,130	-		GFF2400	0.15	+0.6
2,421,130	-		GFF2400	0.15	-0.6
2,421,135	+		GFF2400	0.15	-0.8
2,421,158	+		GFF2400	0.18	+0.8
2,421,164	+		GFF2400	0.18	+0.4
2,421,172	-		GFF2400	0.19	+0.7
2,421,172	-		GFF2400	0.19	+0.3
2,421,172	-		GFF2400	0.19	+0.9
2,421,172	-		GFF2400	0.19	-1.2
2,421,260	-		GFF2400	0.29	+0.8
2,421,292	-		GFF2400	0.32	-0.4
2,421,292	-		GFF2400	0.32	-1.2
2,421,366	-		GFF2400	0.41	-0.0
2,421,388	-		GFF2400	0.43	+0.3
2,421,388	-		GFF2400	0.43	-1.1
2,421,404	+		GFF2400	0.45	-1.6
2,421,430	+		GFF2400	0.48	+0.3
2,421,442	+		GFF2400	0.49	-0.4
2,421,449	+		GFF2400	0.50	-0.1
2,421,451	-		GFF2400	0.50	+0.9
2,421,455	+		GFF2400	0.50	-2.4
2,421,463	-		GFF2400	0.51	+0.8
2,421,463	-		GFF2400	0.51	+0.2
2,421,463	-		GFF2400	0.51	+0.3
2,421,463	-		GFF2400	0.51	+0.1
2,421,478	-		GFF2400	0.53	+0.5
2,421,488	+		GFF2400	0.54	-0.6
2,421,488	+		GFF2400	0.54	-0.6
2,421,496	-		GFF2400	0.55	+0.3
2,421,496	-		GFF2400	0.55	+0.7
2,421,498	+		GFF2400	0.55	-1.4
2,421,501	-		GFF2400	0.56	+0.9
2,421,528	-		GFF2400	0.58	+0.6
2,421,532	-		GFF2400	0.59	-0.5
2,421,536	-		GFF2400	0.59	-0.3
2,421,538	-		GFF2400	0.60	-0.2
2,421,580	-		GFF2400	0.64	+0.9
2,421,616	-		GFF2400	0.68	+1.6
2,421,631	+		GFF2400	0.70	-0.6
2,421,639	-		GFF2400	0.71	+1.2
2,421,639	-		GFF2400	0.71	+0.8
2,421,701	+		GFF2400	0.78	-2.1
2,421,701	+		GFF2400	0.78	-0.1
2,421,701	+		GFF2400	0.78	+0.8
2,421,709	-		GFF2400	0.78	+0.6
2,421,709	-		GFF2400	0.78	-0.2
2,421,709	-		GFF2400	0.78	+0.3
2,421,711	+		GFF2400	0.79	+0.9
2,421,711	+		GFF2400	0.79	-1.3
2,421,711	+		GFF2400	0.79	-0.5
2,421,712	+		GFF2400	0.79	-0.2
2,421,719	-		GFF2400	0.80	+0.7
2,421,745	-		GFF2400	0.82	+0.9
2,421,772	+		GFF2400	0.85	-0.2
2,421,822	-				-2.0
2,421,838	+				-1.3
2,421,868	+				-0.6
2,421,877	-				+0.5
2,421,885	-				-0.4
2,421,887	+				+1.6
2,421,897	+				-2.8
2,421,897	+				-0.9
2,421,897	+				-1.3
2,421,897	+				-3.2
2,421,905	-				-2.1
2,421,905	-				-0.0
2,421,905	-				-0.2
2,421,905	-				-2.5
2,421,905	-				-0.6
2,421,909	+				-2.0
2,421,909	+				-0.4
2,421,909	+				+0.1
2,421,909	+				-1.4
2,421,917	-				-0.1
2,421,917	-				-2.2
2,421,917	-				-1.3
2,421,917	-				-0.6
2,421,917	-				-1.7
2,421,917	-				-0.6
2,421,942	-		GFF2401	0.12	-0.4
2,421,945	-		GFF2401	0.13	-1.5
2,422,173	-				-1.7
2,422,200	+				+0.2
2,422,205	+				-0.6
2,422,208	-				-1.4
2,422,210	+				-0.0
2,422,210	+				-0.4
2,422,215	+				+0.8
2,422,226	+				-1.6
2,422,226	+				-0.1
2,422,226	+				+0.4
2,422,226	+				+0.2
2,422,234	-				+0.5
2,422,236	+				-0.5
2,422,244	-				+0.3
2,422,244	-				-0.4
2,422,245	-				-0.9
2,422,263	-				-0.3
2,422,263	-				+1.2
2,422,281	-				+0.1
2,422,281	-				-0.0
2,422,283	+				-1.2
2,422,296	-				-0.1
2,422,301	-				-1.3
2,422,313	+				+0.3
2,422,313	+				-0.7
2,422,313	+				-0.7
2,422,345	+				-0.1
2,422,345	+				-0.7
2,422,385	-				+0.3
2,422,396	-				-0.2
2,422,405	+		GFF2402	0.12	-1.3
2,422,416	+		GFF2402	0.15	+0.1
2,422,424	-		GFF2402	0.17	+0.1
2,422,424	-		GFF2402	0.17	+1.3
2,422,438	+		GFF2402	0.20	+0.1
2,422,438	-		GFF2402	0.20	-0.8
2,422,446	-		GFF2402	0.22	+0.5
2,422,463	+		GFF2402	0.27	-1.7
2,422,464	-		GFF2402	0.27	+0.6
2,422,466	+		GFF2402	0.28	+0.6
2,422,484	-		GFF2402	0.32	+0.1
2,422,517	-		GFF2402	0.41	+1.3
2,422,527	+		GFF2402	0.43	-0.0
2,422,539	+		GFF2402	0.47	-0.3
2,422,545	-		GFF2402	0.48	-0.1
2,422,547	-		GFF2402	0.49	-1.5
2,422,548	-		GFF2402	0.49	-0.2
2,422,551	+		GFF2402	0.50	-1.1
2,422,551	+		GFF2402	0.50	+0.4
2,422,559	-		GFF2402	0.52	-1.5
2,422,559	-		GFF2402	0.52	-0.4
2,422,561	+		GFF2402	0.52	+1.0
2,422,571	-		GFF2402	0.55	+0.8
2,422,591	-		GFF2402	0.60	-1.7
2,422,598	-		GFF2402	0.62	+1.2
2,422,609	+		GFF2402	0.65	+1.2
2,422,619	+		GFF2402	0.67	-0.3
2,422,621	+		GFF2402	0.68	-0.2
2,422,623	+		GFF2402	0.68	-0.1
2,422,623	+		GFF2402	0.68	-2.6
2,422,631	-		GFF2402	0.71	-0.3
2,422,637	+		GFF2402	0.72	-2.0
2,422,641	-		GFF2402	0.73	-0.7
2,422,647	+		GFF2402	0.75	+0.4
2,422,647	+		GFF2402	0.75	-0.4
2,422,647	+		GFF2402	0.75	+0.5
2,422,650	-		GFF2402	0.76	-0.2
2,422,655	-		GFF2402	0.77	+1.0
2,422,655	-		GFF2402	0.77	-1.7
2,422,655	-		GFF2402	0.77	+0.3
2,422,655	-		GFF2402	0.77	-0.3
2,422,655	-		GFF2402	0.77	-0.1
2,422,655	-		GFF2402	0.77	+0.5
2,422,674	+		GFF2402	0.82	-0.6
2,422,674	+		GFF2402	0.82	-0.1
2,422,674	+		GFF2402	0.82	-0.6
2,422,674	+		GFF2402	0.82	-0.1
2,422,675	-		GFF2402	0.82	-0.4
2,422,675	-		GFF2402	0.82	+0.1
2,422,682	-		GFF2402	0.84	-0.6
2,422,682	-		GFF2402	0.84	+0.9
2,422,682	-		GFF2402	0.84	+0.2
2,422,682	-		GFF2402	0.84	+0.5
2,422,682	-		GFF2402	0.84	+0.1
2,422,682	-		GFF2402	0.84	-2.0
2,422,700	+		GFF2402	0.89	-2.6
2,422,708	-				-0.2
2,422,718	+				-2.6
2,422,723	+				-0.0
2,422,723	+				+0.2
2,422,723	+				-1.5
2,422,728	+				+1.8
2,422,728	+				-0.7
2,422,728	+				-1.4
2,422,736	-				-0.3
2,422,736	-				+0.7
2,422,736	-				+0.2
2,422,740	-				-0.4
2,422,745	-				-0.5
2,422,745	-				-2.7
2,422,824	+				-0.1
2,422,848	+				-0.6
2,422,849	+				+0.1
2,422,849	+				+0.4
2,422,849	+				+0.3
2,422,857	-				+0.3
2,422,857	-				+0.3
2,422,857	-				-1.0
2,422,858	+				+0.9
2,422,858	-				+0.3
2,422,859	+				-1.5
2,422,873	+				+0.9
2,422,874	+				-0.3
2,422,879	+				-0.1
2,422,884	+				+1.3
2,422,887	-				+0.8
2,422,895	+				+0.1
2,422,895	+				+0.6
2,422,895	+				+1.1
2,422,895	+				-0.9
2,422,895	+				-0.3
2,422,903	-				+0.2