Strain Fitness in Sphingobium sp. HT1-2 around GFF2370

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,392,414	-		GFF2369	0.49	-2.4
2,392,431	+		GFF2369	0.50	-0.4
2,392,442	+		GFF2369	0.50	-2.0
2,392,482	+		GFF2369	0.52	+1.1
2,392,500	+		GFF2369	0.53	-0.7
2,392,500	+		GFF2369	0.53	-0.5
2,392,504	-		GFF2369	0.53	-2.4
2,392,520	+		GFF2369	0.54	-1.0
2,392,540	+		GFF2369	0.55	-1.0
2,392,560	-		GFF2369	0.56	-0.9
2,392,560	-		GFF2369	0.56	-2.5
2,392,577	-		GFF2369	0.57	-0.0
2,392,592	+		GFF2369	0.58	-1.0
2,392,600	-		GFF2369	0.58	-1.1
2,392,600	-		GFF2369	0.58	-0.7
2,392,600	-		GFF2369	0.58	-1.5
2,392,703	-		GFF2369	0.64	-1.4
2,392,703	-		GFF2369	0.64	-1.4
2,392,703	-		GFF2369	0.64	-0.2
2,392,710	+		GFF2369	0.64	+1.6
2,392,757	-		GFF2369	0.66	-1.5
2,392,776	-		GFF2369	0.67	-1.6
2,392,778	-		GFF2369	0.67	-2.2
2,392,783	-		GFF2369	0.68	-2.2
2,392,794	+		GFF2369	0.68	+0.4
2,392,848	-		GFF2369	0.71	-1.7
2,392,939	+		GFF2369	0.76	-1.5
2,392,939	+		GFF2369	0.76	+0.3
2,392,939	+		GFF2369	0.76	-2.4
2,392,944	+		GFF2369	0.76	-2.8
2,392,953	+		GFF2369	0.76	-0.4
2,392,955	+		GFF2369	0.77	-1.9
2,392,972	+		GFF2369	0.77	-1.6
2,392,984	+		GFF2369	0.78	-1.6
2,393,032	+		GFF2369	0.80	-0.0
2,393,045	-		GFF2369	0.81	+0.5
2,393,045	-		GFF2369	0.81	-1.0
2,393,048	+		GFF2369	0.81	+1.0
2,393,048	+		GFF2369	0.81	+1.6
2,393,070	+		GFF2369	0.82	+0.3
2,393,070	+		GFF2369	0.82	-0.8
2,393,078	-		GFF2369	0.83	-1.4
2,393,100	-		GFF2369	0.84	-0.5
2,393,157	-		GFF2369	0.87	-2.1
2,393,203	+		GFF2369	0.89	-1.7
2,393,262	+				-0.8
2,393,270	-				-0.7
2,393,331	+				-1.5
2,393,334	+				-1.1
2,393,339	-				-0.8
2,393,346	-				-0.8
2,393,371	+				+1.1
2,393,440	-				-1.5
2,393,447	+				-2.1
2,393,448	-				-2.3
2,393,468	+				-1.0
2,393,468	+				-0.4
2,393,476	-				-1.8
2,393,483	+				-1.3
2,393,483	+				-2.8
2,393,486	-				-2.4
2,393,491	-				-2.3
2,393,491	-				-1.0
2,393,529	+				-1.1
2,393,545	+				-1.7
2,393,605	-		GFF2370	0.13	-2.9
2,393,605	-		GFF2370	0.13	-2.2
2,393,625	-		GFF2370	0.14	-1.9
2,393,662	+		GFF2370	0.16	-1.6
2,393,662	+		GFF2370	0.16	-1.1
2,393,765	+		GFF2370	0.23	-2.1
2,393,765	+		GFF2370	0.23	-1.4
2,393,765	+		GFF2370	0.23	-3.1
2,393,766	+		GFF2370	0.23	-1.2
2,393,773	-		GFF2370	0.24	-1.0
2,393,773	-		GFF2370	0.24	-1.0
2,393,773	-		GFF2370	0.24	-2.0
2,393,794	+		GFF2370	0.25	-2.6
2,393,797	-		GFF2370	0.25	-2.2
2,393,856	-		GFF2370	0.29	-1.0
2,393,874	-		GFF2370	0.30	-3.6
2,393,876	-		GFF2370	0.30	-0.3
2,393,878	+		GFF2370	0.30	-2.9
2,393,886	-		GFF2370	0.31	-1.3
2,393,886	-		GFF2370	0.31	-1.9
2,393,888	-		GFF2370	0.31	-3.0
2,393,890	+		GFF2370	0.31	-2.5
2,393,903	+		GFF2370	0.32	-0.4
2,393,937	+		GFF2370	0.34	-0.3
2,393,941	+		GFF2370	0.35	-1.2
2,393,941	+		GFF2370	0.35	-2.3
2,393,949	-		GFF2370	0.35	-0.7
2,393,949	-		GFF2370	0.35	-1.2
2,393,949	-		GFF2370	0.35	-2.0
2,393,949	-		GFF2370	0.35	-3.1
2,393,957	+		GFF2370	0.36	-1.7
2,393,966	+		GFF2370	0.36	-1.1
2,393,974	-		GFF2370	0.37	-3.0
2,394,002	+		GFF2370	0.39	-2.5
2,394,021	-		GFF2370	0.40	-2.4
2,394,046	+		GFF2370	0.41	-1.4
2,394,108	-		GFF2370	0.46	-0.4
2,394,142	+		GFF2370	0.48	-2.3
2,394,142	+		GFF2370	0.48	-2.8
2,394,142	+		GFF2370	0.48	-1.0
2,394,145	+		GFF2370	0.48	-2.2
2,394,150	-		GFF2370	0.48	-0.7
2,394,150	-		GFF2370	0.48	-0.7
2,394,150	-		GFF2370	0.48	-2.2
2,394,150	-		GFF2370	0.48	-1.7
2,394,158	+		GFF2370	0.49	-3.4
2,394,174	-		GFF2370	0.50	-2.3
2,394,196	-		GFF2370	0.51	-2.4
2,394,199	+		GFF2370	0.52	-3.1
2,394,200	-		GFF2370	0.52	-0.3
2,394,234	-		GFF2370	0.54	-2.8
2,394,246	-		GFF2370	0.55	-1.1
2,394,270	+		GFF2370	0.56	-0.5
2,394,278	+		GFF2370	0.57	-0.3
2,394,285	+		GFF2370	0.57	-0.7
2,394,285	+		GFF2370	0.57	+0.3
2,394,285	+		GFF2370	0.57	-3.5
2,394,285	+		GFF2370	0.57	-2.0
2,394,285	+		GFF2370	0.57	-2.2
2,394,285	+		GFF2370	0.57	-1.4
2,394,285	+		GFF2370	0.57	-2.2
2,394,285	+		GFF2370	0.57	-1.5
2,394,293	-		GFF2370	0.58	-0.3
2,394,293	-		GFF2370	0.58	-3.1
2,394,303	-		GFF2370	0.58	-2.5
2,394,359	+		GFF2370	0.62	-2.0
2,394,389	+		GFF2370	0.64	-1.2
2,394,416	-		GFF2370	0.66	-1.5
2,394,416	-		GFF2370	0.66	-2.2
2,394,433	+		GFF2370	0.67	-2.2
2,394,433	+		GFF2370	0.67	-3.8
2,394,437	-		GFF2370	0.67	-0.4
2,394,480	-		GFF2370	0.70	-2.8
2,394,504	+		GFF2370	0.72	-1.2
2,394,543	+		GFF2370	0.74	-2.0
2,394,548	+		GFF2370	0.74	-3.4
2,394,548	+		GFF2370	0.74	-3.1
2,394,613	+		GFF2370	0.79	-2.6
2,394,621	-		GFF2370	0.79	-1.8
2,394,646	-		GFF2370	0.81	-2.0
2,394,658	-		GFF2370	0.82	-1.9
2,394,658	-		GFF2370	0.82	-1.5
2,394,751	+		GFF2370	0.88	-1.5
2,394,756	+		GFF2370	0.88	-2.9
2,394,764	-		GFF2370	0.89	-2.2
2,394,769	-		GFF2370	0.89	-0.7
2,394,774	-		GFF2370	0.89	-0.7
2,394,779	+		GFF2370	0.90	-0.4
2,394,779	-		GFF2370	0.90	-2.2
2,394,799	+				-0.9
2,394,871	-				-1.3
2,394,880	+				-0.0
2,394,899	+				-3.0
2,394,899	+				-0.2
2,394,899	+				-1.7
2,394,965	+				+0.3
2,395,010	-				-0.5
2,395,024	+				+0.9
2,395,058	-				+0.0
2,395,129	+				-0.1
2,395,129	+				-0.2
2,395,242	-		GFF2371	0.25	-0.6
2,395,320	-		GFF2371	0.58	-0.5
2,395,323	+		GFF2371	0.59	+0.0
2,395,331	-		GFF2371	0.63	+0.8
2,395,338	+		GFF2371	0.66	+0.3
2,395,338	-		GFF2371	0.66	-0.1
2,395,346	-		GFF2371	0.69	+0.2
2,395,377	+		GFF2371	0.82	+0.8
2,395,385	-		GFF2371	0.86	-1.8
2,395,395	-				-1.8
2,395,405	-				-0.6
2,395,406	+				-0.5
2,395,420	-				+0.2
2,395,429	+				-0.8
2,395,437	-				+0.3
2,395,516	-		GFF2372	0.11	+0.8
2,395,528	-		GFF2372	0.12	+1.1
2,395,540	-		GFF2372	0.14	-1.0
2,395,583	+		GFF2372	0.20	-0.4
2,395,588	+		GFF2372	0.21	+0.6
2,395,588	+		GFF2372	0.21	+0.9
2,395,590	-		GFF2372	0.21	+0.9
2,395,591	-		GFF2372	0.21	+0.7
2,395,593	+		GFF2372	0.21	+0.1
2,395,593	+		GFF2372	0.21	-0.1
2,395,601	-		GFF2372	0.22	-1.5
2,395,603	+		GFF2372	0.23	-1.1
2,395,618	+		GFF2372	0.25	-0.4
2,395,628	+		GFF2372	0.26	+2.3
2,395,641	-		GFF2372	0.28	+1.6
2,395,702	+		GFF2372	0.36	-1.0
2,395,737	+		GFF2372	0.41	-0.8
2,395,750	+		GFF2372	0.43	+0.1
2,395,780	+		GFF2372	0.47	-0.6
2,395,789	-		GFF2372	0.48	-1.0
2,395,793	-		GFF2372	0.49	+0.6
2,395,794	+		GFF2372	0.49	-2.4
2,395,802	-		GFF2372	0.50	-0.7
2,395,824	-		GFF2372	0.53	-0.0
2,395,826	+		GFF2372	0.53	-0.5
2,395,829	-		GFF2372	0.54	-0.5
2,395,836	+		GFF2372	0.55	+0.6
2,395,839	-		GFF2372	0.55	+1.5
2,395,839	-		GFF2372	0.55	+0.9
2,395,844	-		GFF2372	0.56	-1.3
2,395,878	+		GFF2372	0.60	+0.6
2,395,882	+		GFF2372	0.61	-1.1
2,395,893	+		GFF2372	0.62	-1.3
2,395,901	-		GFF2372	0.64	+0.8
2,395,906	+		GFF2372	0.64	-0.7
2,395,914	+		GFF2372	0.65	+0.5
2,395,914	+		GFF2372	0.65	+1.1
2,395,917	-		GFF2372	0.66	-1.3
2,395,922	-		GFF2372	0.66	+0.7