Strain Fitness in Sphingobium sp. HT1-2 around GFF2340

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,362,962	+				-1.4
2,362,991	-		GFF2338	0.11	+0.6
2,362,993	+		GFF2338	0.12	-0.3
2,363,115	+		GFF2338	0.76	-2.3
2,363,115	+		GFF2338	0.76	-2.0
2,363,115	+		GFF2338	0.76	-0.2
2,363,115	+		GFF2338	0.76	-1.5
2,363,115	+		GFF2338	0.76	-2.0
2,363,115	+		GFF2338	0.76	-1.4
2,363,115	+		GFF2338	0.76	-1.6
2,363,115	+		GFF2338	0.76	-1.3
2,363,115	+		GFF2338	0.76	-0.3
2,363,123	-		GFF2338	0.80	+0.0
2,363,123	-		GFF2338	0.80	-0.3
2,363,123	-		GFF2338	0.80	+0.2
2,363,123	-		GFF2338	0.80	+0.3
2,363,123	-		GFF2338	0.80	-0.2
2,363,123	-		GFF2338	0.80	+1.9
2,363,123	-		GFF2338	0.80	+0.1
2,363,123	-		GFF2338	0.80	-0.1
2,363,123	-		GFF2338	0.80	+0.9
2,363,123	-		GFF2338	0.80	+0.3
2,363,123	-		GFF2338	0.80	-1.0
2,363,123	-		GFF2338	0.80	-1.3
2,363,123	-		GFF2338	0.80	-0.7
2,363,123	-		GFF2338	0.80	-0.4
2,363,123	-		GFF2338	0.80	-2.1
2,363,123	-		GFF2338	0.80	-0.3
2,363,147	+				-0.6
2,363,149	+				-0.8
2,363,149	+				-3.0
2,363,156	+				-1.6
2,363,157	-				-2.3
2,363,162	-				-0.0
2,363,169	-				-0.1
2,363,173	+				+0.6
2,363,181	-				+0.5
2,363,181	-				+0.0
2,363,193	+				+0.0
2,363,201	-				-0.5
2,363,201	-				+0.1
2,363,257	-				+1.2
2,363,283	+		GFF2339	0.15	+0.9
2,363,350	+		GFF2339	0.33	+0.1
2,363,350	+		GFF2339	0.33	-0.2
2,363,358	-		GFF2339	0.35	-0.1
2,363,358	-		GFF2339	0.35	+0.3
2,363,359	-		GFF2339	0.35	-1.7
2,363,364	-		GFF2339	0.37	-1.7
2,363,373	-		GFF2339	0.39	+0.4
2,363,405	+		GFF2339	0.47	+1.4
2,363,413	-		GFF2339	0.50	+0.7
2,363,413	-		GFF2339	0.50	+0.5
2,363,427	-		GFF2339	0.53	+0.3
2,363,575	+				-0.8
2,363,575	+				-0.5
2,363,603	+				-0.8
2,363,603	+				+0.1
2,363,611	-				+0.7
2,363,611	-				+0.6
2,363,611	-				+0.4
2,363,611	-				-2.5
2,363,611	-				+1.1
2,363,611	-				+0.8
2,363,615	-				-0.3
2,363,618	-				-1.0
2,363,630	+				-0.9
2,363,630	+				+1.0
2,363,630	+				-2.3
2,363,639	-				-0.6
2,363,641	+				+0.4
2,363,648	+				-0.5
2,363,648	+				-0.6
2,363,649	-				+0.3
2,363,650	+				+0.9
2,363,650	+				-0.4
2,363,656	-				+0.4
2,363,656	-				-1.6
2,363,656	-				+0.2
2,363,656	-				+0.5
2,363,668	-				+1.4
2,363,686	-				-0.4
2,363,686	-				+0.3
2,363,688	+				-2.6
2,363,701	+				-0.6
2,363,706	+				-2.8
2,363,709	+				+0.1
2,363,709	-				-0.1
2,363,754	-				+0.1
2,363,844	+				-0.1
2,363,863	+				+0.8
2,363,864	+				+0.8
2,363,866	-				-1.3
2,363,871	-		GFF2340	0.10	-0.4
2,363,898	-		GFF2340	0.12	+0.7
2,363,900	+		GFF2340	0.12	+1.2
2,363,924	+		GFF2340	0.13	+0.3
2,363,925	+		GFF2340	0.13	-0.4
2,363,932	-		GFF2340	0.14	+0.4
2,363,932	-		GFF2340	0.14	-0.6
2,363,933	-		GFF2340	0.14	-2.3
2,363,939	+		GFF2340	0.14	+0.6
2,363,944	+		GFF2340	0.14	+0.7
2,364,020	+		GFF2340	0.19	-1.7
2,364,109	+		GFF2340	0.24	+0.2
2,364,143	+		GFF2340	0.26	-1.9
2,364,161	+		GFF2340	0.27	-1.1
2,364,161	+		GFF2340	0.27	+1.0
2,364,161	+		GFF2340	0.27	-1.4
2,364,169	-		GFF2340	0.28	-0.3
2,364,169	-		GFF2340	0.28	-1.8
2,364,169	-		GFF2340	0.28	+0.2
2,364,169	-		GFF2340	0.28	+1.1
2,364,192	+		GFF2340	0.29	+0.3
2,364,200	-		GFF2340	0.30	+0.5
2,364,215	+		GFF2340	0.31	+1.0
2,364,274	-		GFF2340	0.34	+0.2
2,364,287	+		GFF2340	0.35	+0.9
2,364,287	+		GFF2340	0.35	+0.1
2,364,287	+		GFF2340	0.35	-0.6
2,364,287	+		GFF2340	0.35	+1.3
2,364,287	+		GFF2340	0.35	-1.4
2,364,287	+		GFF2340	0.35	-1.9
2,364,295	-		GFF2340	0.35	-1.8
2,364,295	-		GFF2340	0.35	-1.3
2,364,309	+		GFF2340	0.36	-1.8
2,364,317	-		GFF2340	0.37	-1.0
2,364,355	-		GFF2340	0.39	+0.6
2,364,363	-		GFF2340	0.40	-1.2
2,364,395	-		GFF2340	0.41	-1.3
2,364,420	+		GFF2340	0.43	-0.4
2,364,425	+		GFF2340	0.43	-0.4
2,364,471	-		GFF2340	0.46	+1.0
2,364,482	-		GFF2340	0.47	-2.7
2,364,502	-		GFF2340	0.48	+0.0
2,364,540	-		GFF2340	0.50	-1.5
2,364,566	-		GFF2340	0.52	-2.5
2,364,566	-		GFF2340	0.52	-1.8
2,364,566	-		GFF2340	0.52	-0.4
2,364,571	-		GFF2340	0.52	-0.9
2,364,571	-		GFF2340	0.52	-0.1
2,364,582	+		GFF2340	0.53	-1.1
2,364,582	+		GFF2340	0.53	+0.0
2,364,585	-		GFF2340	0.53	-0.1
2,364,595	-		GFF2340	0.53	+1.1
2,364,643	+		GFF2340	0.56	-0.7
2,364,651	-		GFF2340	0.57	-0.2
2,364,651	-		GFF2340	0.57	-2.3
2,364,655	+		GFF2340	0.57	-1.8
2,364,691	+		GFF2340	0.59	+1.5
2,364,691	+		GFF2340	0.59	+0.3
2,364,691	+		GFF2340	0.59	-1.6
2,364,711	+		GFF2340	0.60	-0.3
2,364,721	-		GFF2340	0.61	-0.6
2,364,721	-		GFF2340	0.61	+0.7
2,364,721	-		GFF2340	0.61	-0.2
2,364,721	-		GFF2340	0.61	-1.8
2,364,721	-		GFF2340	0.61	-0.6
2,364,721	-		GFF2340	0.61	+0.7
2,364,733	+		GFF2340	0.62	-0.9
2,364,779	-		GFF2340	0.64	+0.6
2,364,788	-		GFF2340	0.65	+1.0
2,364,796	+		GFF2340	0.65	+1.0
2,364,801	+		GFF2340	0.66	-1.8
2,364,822	+		GFF2340	0.67	+0.3
2,364,822	+		GFF2340	0.67	+1.2
2,364,827	+		GFF2340	0.67	+0.2
2,364,830	-		GFF2340	0.68	-1.8
2,364,830	-		GFF2340	0.68	+0.1
2,364,830	-		GFF2340	0.68	+0.2
2,364,830	-		GFF2340	0.68	+0.1
2,364,835	-		GFF2340	0.68	-1.2
2,364,842	-		GFF2340	0.68	-0.5
2,364,877	-		GFF2340	0.70	-1.7
2,364,879	+		GFF2340	0.70	+0.4
2,364,887	-		GFF2340	0.71	+0.7
2,364,896	-		GFF2340	0.71	+0.5
2,364,909	-		GFF2340	0.72	+0.0
2,364,913	+		GFF2340	0.72	-1.2
2,364,913	+		GFF2340	0.72	+0.9
2,364,913	+		GFF2340	0.72	+1.0
2,364,914	+		GFF2340	0.73	+0.5
2,364,921	+		GFF2340	0.73	-0.7
2,364,921	+		GFF2340	0.73	-1.9
2,364,921	+		GFF2340	0.73	-1.2
2,364,921	-		GFF2340	0.73	+0.7
2,364,921	-		GFF2340	0.73	-2.2
2,364,921	-		GFF2340	0.73	-0.3
2,364,923	+		GFF2340	0.73	-1.6
2,364,926	+		GFF2340	0.73	+0.3
2,364,929	-		GFF2340	0.73	-1.1
2,364,931	-		GFF2340	0.74	-0.1
2,364,940	+		GFF2340	0.74	+0.7
2,364,956	-		GFF2340	0.75	-1.5
2,364,956	-		GFF2340	0.75	+0.3
2,365,004	-		GFF2340	0.78	-0.4
2,365,014	-		GFF2340	0.79	-0.4
2,365,026	+		GFF2340	0.79	+0.2
2,365,031	+		GFF2340	0.80	-0.1
2,365,031	+		GFF2340	0.80	-1.3
2,365,068	+		GFF2340	0.82	+0.3
2,365,070	-		GFF2340	0.82	+0.8
2,365,116	+		GFF2340	0.85	+0.0
2,365,133	+		GFF2340	0.86	+0.5
2,365,136	-		GFF2340	0.86	-1.2
2,365,146	-		GFF2340	0.86	-0.5
2,365,177	+		GFF2340	0.88	+0.5
2,365,188	+		GFF2340	0.89	+0.1
2,365,190	-		GFF2340	0.89	+0.7
2,365,195	-		GFF2340	0.89	-0.1
2,365,205	-		GFF2340	0.90	-0.5
2,365,205	-		GFF2340	0.90	-0.3
2,365,208	+				-0.1
2,365,211	-				-1.6
2,365,211	-				+0.4
2,365,215	-				+0.8
2,365,220	-				-0.8
2,365,264	-				+1.0
2,365,337	+				+0.4
2,365,342	-				-1.3
2,365,344	+				-0.1
2,365,344	+				-0.1
2,365,347	-				-0.2
2,365,347	-				+1.0
2,365,364	+				-0.3
2,365,378	-				+0.7
2,365,416	+				+0.1
2,365,423	+				-0.3
2,365,428	+				+0.7
2,365,431	-				-0.1
2,365,434	-				-0.3
2,365,436	-				-0.5
2,365,436	-				-0.4
2,366,220	+				-0.1
2,366,220	+				-0.8
2,366,220	+				-0.2
2,366,223	-				-1.3
2,366,228	-				+0.2
2,366,228	-				+0.5
2,366,228	-				+0.9
2,366,228	-				+0.1
2,366,228	-				+0.4
2,366,256	+				+0.3
2,366,268	+				-0.9
2,366,268	+				-1.1
2,366,268	+				-1.3
2,366,268	+				+1.0
2,366,268	+				-0.2
2,366,268	+				-0.9
2,366,268	+				-1.2
2,366,268	+				+0.5
2,366,268	+				-1.5
2,366,276	-				-0.4
2,366,276	-				-0.7
2,366,276	-				-1.2
2,366,276	-				-0.3
2,366,276	-				-0.7
2,366,276	-				-0.9
2,366,276	-				-0.2
2,366,278	-				-0.8
2,366,301	+				-1.1
2,366,301	+				+0.0
2,366,301	+				+0.8
2,366,301	+				+1.0
2,366,306	+				-1.3
2,366,311	+				+0.4
2,366,314	-				-1.5
2,366,319	-				+0.8
2,366,319	-				-0.8
2,366,321	+				+0.1