Strain Fitness in Sphingobium sp. HT1-2 around GFF2313

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,337,971	-		GFF2312	0.53	+0.1
2,337,988	-		GFF2312	0.54	-1.3
2,337,997	+		GFF2312	0.55	+0.1
2,338,035	+		GFF2312	0.56	-0.5
2,338,035	+		GFF2312	0.56	-0.2
2,338,040	+		GFF2312	0.57	+0.2
2,338,043	-		GFF2312	0.57	-0.8
2,338,043	-		GFF2312	0.57	+0.6
2,338,055	+		GFF2312	0.57	+0.3
2,338,058	-		GFF2312	0.58	-1.5
2,338,064	+		GFF2312	0.58	+0.6
2,338,101	+		GFF2312	0.60	-0.6
2,338,144	+		GFF2312	0.62	+0.8
2,338,184	-		GFF2312	0.64	+0.8
2,338,210	+		GFF2312	0.65	-0.5
2,338,248	+		GFF2312	0.67	+1.1
2,338,248	+		GFF2312	0.67	+0.5
2,338,251	-		GFF2312	0.67	-0.2
2,338,253	+		GFF2312	0.67	+0.2
2,338,256	-		GFF2312	0.67	-0.5
2,338,256	-		GFF2312	0.67	-0.5
2,338,256	-		GFF2312	0.67	-2.2
2,338,256	-		GFF2312	0.67	+1.3
2,338,261	-		GFF2312	0.68	+1.0
2,338,286	+		GFF2312	0.69	-1.7
2,338,303	+		GFF2312	0.70	-0.2
2,338,303	+		GFF2312	0.70	-1.3
2,338,303	+		GFF2312	0.70	-1.6
2,338,303	+		GFF2312	0.70	-0.3
2,338,311	-		GFF2312	0.70	-0.5
2,338,311	-		GFF2312	0.70	-0.1
2,338,331	-		GFF2312	0.71	-0.8
2,338,341	+		GFF2312	0.72	+0.7
2,338,341	+		GFF2312	0.72	+1.5
2,338,342	-		GFF2312	0.72	+1.0
2,338,349	-		GFF2312	0.72	-0.2
2,338,349	-		GFF2312	0.72	+0.8
2,338,394	-		GFF2312	0.74	-0.2
2,338,412	+		GFF2312	0.75	-2.1
2,338,412	+		GFF2312	0.75	-0.5
2,338,412	+		GFF2312	0.75	+0.4
2,338,412	+		GFF2312	0.75	+0.7
2,338,412	+		GFF2312	0.75	+0.6
2,338,415	-		GFF2312	0.75	-0.0
2,338,415	-		GFF2312	0.75	+0.4
2,338,415	-		GFF2312	0.75	-0.5
2,338,420	-		GFF2312	0.76	+1.3
2,338,420	-		GFF2312	0.76	+0.8
2,338,420	-		GFF2312	0.76	+0.2
2,338,420	-		GFF2312	0.76	+0.3
2,338,429	+		GFF2312	0.76	-0.2
2,338,437	-		GFF2312	0.76	+0.8
2,338,455	-		GFF2312	0.77	+0.4
2,338,479	+		GFF2312	0.78	+0.2
2,338,479	+		GFF2312	0.78	+0.6
2,338,479	+		GFF2312	0.78	-0.2
2,338,487	-		GFF2312	0.79	-0.7
2,338,487	-		GFF2312	0.79	-0.1
2,338,487	-		GFF2312	0.79	-0.8
2,338,515	+		GFF2312	0.80	-0.7
2,338,523	-		GFF2312	0.81	+1.8
2,338,537	-		GFF2312	0.81	+0.4
2,338,538	+		GFF2312	0.81	-0.3
2,338,538	+		GFF2312	0.81	-0.9
2,338,538	+		GFF2312	0.81	+0.2
2,338,538	+		GFF2312	0.81	-0.1
2,338,538	+		GFF2312	0.81	+0.0
2,338,538	+		GFF2312	0.81	+0.1
2,338,541	-		GFF2312	0.82	+0.3
2,338,546	-		GFF2312	0.82	-0.1
2,338,546	-		GFF2312	0.82	-1.3
2,338,546	-		GFF2312	0.82	-1.8
2,338,572	+		GFF2312	0.83	+0.3
2,338,572	+		GFF2312	0.83	-1.4
2,338,590	+		GFF2312	0.84	+0.8
2,338,600	+		GFF2312	0.84	-0.6
2,338,636	-		GFF2312	0.86	+0.1
2,338,638	-		GFF2312	0.86	-0.5
2,338,643	+		GFF2312	0.87	-1.5
2,338,651	-		GFF2312	0.87	+0.4
2,338,668	-		GFF2312	0.88	-1.3
2,338,673	+		GFF2312	0.88	-0.2
2,338,702	-		GFF2312	0.90	-0.8
2,338,748	-				-1.7
2,338,753	-				-0.2
2,338,762	-				+0.5
2,338,810	+				-0.4
2,338,836	+				-1.4
2,338,843	+				+0.2
2,338,851	-				-0.2
2,338,851	-				-2.6
2,338,851	-				-0.6
2,338,861	-				+0.2
2,338,865	+				+1.9
2,338,873	-				+0.4
2,338,881	-				-0.5
2,338,892	+				+0.3
2,338,897	+				-0.6
2,338,897	+				+0.8
2,338,900	-				+0.1
2,338,900	-				-1.8
2,338,900	-				+1.0
2,338,900	-				+0.0
2,338,900	-				+0.6
2,338,905	-				+0.8
2,338,905	-				-0.3
2,338,917	-				+0.2
2,338,922	-				+1.0
2,338,927	-				+0.4
2,338,943	-				-1.1
2,338,945	+				-0.4
2,338,945	+				-0.1
2,338,945	+				+2.0
2,338,945	+				+0.4
2,338,946	+				-0.8
2,338,953	-				-0.6
2,338,954	-				+1.6
2,338,984	-				+0.5
2,339,058	+		GFF2313	0.10	-0.6
2,339,066	-		GFF2313	0.11	+0.2
2,339,066	-		GFF2313	0.11	+0.5
2,339,066	-		GFF2313	0.11	-1.1
2,339,121	+		GFF2313	0.15	+0.4
2,339,127	-		GFF2313	0.15	-2.7
2,339,129	-		GFF2313	0.16	+0.2
2,339,147	-		GFF2313	0.17	-1.7
2,339,147	-		GFF2313	0.17	-0.3
2,339,147	-		GFF2313	0.17	-0.2
2,339,147	-		GFF2313	0.17	+0.8
2,339,193	-		GFF2313	0.20	+0.3
2,339,195	+		GFF2313	0.20	+0.1
2,339,203	-		GFF2313	0.21	+0.9
2,339,204	-		GFF2313	0.21	-0.4
2,339,235	+		GFF2313	0.23	-0.0
2,339,235	+		GFF2313	0.23	-0.7
2,339,235	+		GFF2313	0.23	-0.6
2,339,242	-		GFF2313	0.24	+0.3
2,339,243	-		GFF2313	0.24	-0.0
2,339,243	-		GFF2313	0.24	-0.6
2,339,243	-		GFF2313	0.24	+0.4
2,339,243	-		GFF2313	0.24	-1.8
2,339,243	-		GFF2313	0.24	+1.5
2,339,250	+		GFF2313	0.24	-1.4
2,339,250	+		GFF2313	0.24	+0.6
2,339,250	+		GFF2313	0.24	-1.4
2,339,250	+		GFF2313	0.24	+1.5
2,339,250	+		GFF2313	0.24	-0.5
2,339,256	-		GFF2313	0.25	+0.6
2,339,258	-		GFF2313	0.25	-0.4
2,339,258	-		GFF2313	0.25	-0.6
2,339,258	-		GFF2313	0.25	-0.8
2,339,281	-		GFF2313	0.27	-0.5
2,339,310	-		GFF2313	0.29	+0.2
2,339,320	+		GFF2313	0.30	-1.6
2,339,320	-		GFF2313	0.30	+0.4
2,339,328	-		GFF2313	0.30	-1.0
2,339,328	-		GFF2313	0.30	-0.2
2,339,328	-		GFF2313	0.30	-0.3
2,339,357	+		GFF2313	0.32	-2.3
2,339,365	-		GFF2313	0.33	-1.1
2,339,402	+		GFF2313	0.36	-1.3
2,339,420	+		GFF2313	0.37	-0.1
2,339,467	+		GFF2313	0.40	+0.9
2,339,472	+		GFF2313	0.41	-0.6
2,339,485	-		GFF2313	0.42	-0.9
2,339,533	+		GFF2313	0.45	+0.3
2,339,535	+		GFF2313	0.45	+0.1
2,339,540	+		GFF2313	0.46	-0.0
2,339,545	+		GFF2313	0.46	-0.4
2,339,545	+		GFF2313	0.46	-0.6
2,339,547	+		GFF2313	0.46	-0.0
2,339,547	+		GFF2313	0.46	-0.9
2,339,547	-		GFF2313	0.46	-0.2
2,339,548	-		GFF2313	0.46	-0.0
2,339,553	+		GFF2313	0.47	+1.5
2,339,553	-		GFF2313	0.47	+0.8
2,339,553	-		GFF2313	0.47	-2.3
2,339,553	-		GFF2313	0.47	+0.3
2,339,553	-		GFF2313	0.47	-0.1
2,339,553	-		GFF2313	0.47	-1.4
2,339,555	-		GFF2313	0.47	-1.3
2,339,557	+		GFF2313	0.47	+0.3
2,339,570	-		GFF2313	0.48	-0.5
2,339,580	-		GFF2313	0.49	-0.2
2,339,582	+		GFF2313	0.49	+0.8
2,339,582	+		GFF2313	0.49	-0.7
2,339,582	+		GFF2313	0.49	-0.3
2,339,582	+		GFF2313	0.49	-0.5
2,339,582	+		GFF2313	0.49	-1.4
2,339,582	+		GFF2313	0.49	+0.1
2,339,583	+		GFF2313	0.49	-0.0
2,339,583	+		GFF2313	0.49	+0.6
2,339,583	+		GFF2313	0.49	-0.0
2,339,586	-		GFF2313	0.49	-0.9
2,339,590	-		GFF2313	0.49	+0.7
2,339,590	-		GFF2313	0.49	+0.3
2,339,590	-		GFF2313	0.49	-2.6
2,339,590	-		GFF2313	0.49	-0.1
2,339,590	-		GFF2313	0.49	-0.3
2,339,590	-		GFF2313	0.49	-1.6
2,339,590	-		GFF2313	0.49	-1.7
2,339,605	-		GFF2313	0.50	+0.6
2,339,624	-		GFF2313	0.52	-1.1
2,339,639	-		GFF2313	0.53	+0.3
2,339,643	+		GFF2313	0.53	-0.8
2,339,651	-		GFF2313	0.54	-0.6
2,339,695	+		GFF2313	0.57	-2.3
2,339,695	+		GFF2313	0.57	-1.2
2,339,703	-		GFF2313	0.58	+1.0
2,339,705	+		GFF2313	0.58	-0.6
2,339,708	-		GFF2313	0.58	+0.5
2,339,708	-		GFF2313	0.58	-1.2
2,339,713	-		GFF2313	0.58	-1.0
2,339,753	-		GFF2313	0.61	+0.2
2,339,758	-		GFF2313	0.62	+1.4
2,339,791	-		GFF2313	0.64	+1.0
2,339,826	+		GFF2313	0.67	-0.0
2,339,845	+		GFF2313	0.68	+0.6
2,339,845	-		GFF2313	0.68	-0.4
2,339,847	+		GFF2313	0.68	-1.4
2,339,852	-		GFF2313	0.69	+0.4
2,339,857	-		GFF2313	0.69	-0.2
2,339,865	+		GFF2313	0.70	-0.8
2,339,873	-		GFF2313	0.70	-1.5
2,339,905	+		GFF2313	0.72	-0.1
2,339,908	+		GFF2313	0.73	-0.3
2,339,925	+		GFF2313	0.74	+0.4
2,339,941	-		GFF2313	0.75	-1.1
2,339,961	-		GFF2313	0.77	-0.2
2,340,001	-		GFF2313	0.79	-1.4
2,340,034	+		GFF2313	0.82	-0.0
2,340,042	-		GFF2313	0.82	+0.5
2,340,060	+		GFF2313	0.84	+0.5
2,340,062	+		GFF2313	0.84	-1.5
2,340,080	+		GFF2313	0.85	-1.1
2,340,080	+		GFF2313	0.85	-1.6
2,340,085	+		GFF2313	0.86	-0.9
2,340,088	-		GFF2313	0.86	+0.2
2,340,093	-		GFF2313	0.86	-0.4
2,340,112	+		GFF2313	0.88	-1.1
2,340,112	+		GFF2313	0.88	-0.0
2,340,112	+		GFF2313	0.88	+0.1
2,340,120	-		GFF2313	0.88	-1.3
2,340,120	-		GFF2313	0.88	-2.2
2,340,126	-		GFF2313	0.89	-1.2
2,340,126	-		GFF2313	0.89	-0.3
2,340,126	-		GFF2313	0.89	-0.2
2,340,127	-		GFF2313	0.89	+0.4
2,340,174	-				+0.6
2,340,210	+				+0.4
2,340,232	+				-0.5
2,340,300	-				-0.9
2,340,300	-				+0.2
2,340,322	-				+0.2
2,340,339	+				+1.9
2,340,339	+				-0.1
2,340,339	+				-1.7
2,340,339	+				+0.2
2,340,341	-				+0.9
2,340,342	-				-1.2
2,340,344	+				+0.8
2,340,347	-				+1.6
2,340,347	-				+0.6
2,340,347	-				-2.2
2,340,347	-				-2.4
2,340,347	-				-0.1
2,340,347	-				-0.2
2,340,347	-				-1.2
2,340,359	-				-0.2
2,340,388	+				+0.9
2,340,388	+				-0.9
2,340,389	+				-0.8
2,340,397	-				-2.4
2,340,399	+				-0.6
2,340,424	+				+0.8
2,340,429	+				+0.5
2,340,437	-				-0.5
2,340,461	+				-1.1
2,340,461	+				-1.9
2,340,461	+				-2.1
2,340,461	+				-0.2
2,340,461	+				-0.7
2,340,461	+				+0.2
2,340,461	+				+0.5
2,340,469	-				-1.8
2,340,469	-				-0.5
2,340,469	-				-0.8
2,340,469	-				+0.1
2,340,469	-				-0.7
2,340,469	-				+1.6
2,340,469	-				-0.1
2,340,469	-				+0.2
2,340,469	-				-0.3
2,340,469	-				-0.4
2,340,469	-				-0.6
2,340,502	-		GFF2314	0.11	-1.3
2,340,508	-		GFF2314	0.11	-0.6
2,340,508	-		GFF2314	0.11	-0.7
2,340,508	-		GFF2314	0.11	+0.7
2,340,508	-		GFF2314	0.11	-0.4
2,340,508	-		GFF2314	0.11	-0.3
2,340,508	-		GFF2314	0.11	+0.7
2,340,513	-		GFF2314	0.11	+0.1
2,340,515	+		GFF2314	0.11	-0.5
2,340,517	-		GFF2314	0.11	-1.4
2,340,517	-		GFF2314	0.11	+0.6
2,340,526	+		GFF2314	0.12	-1.5
2,340,542	+		GFF2314	0.13	-0.7
2,340,542	+		GFF2314	0.13	-0.4
2,340,542	+		GFF2314	0.13	-0.6
2,340,547	+		GFF2314	0.13	+0.8
2,340,547	+		GFF2314	0.13	-1.8
2,340,547	+		GFF2314	0.13	-0.2
2,340,547	+		GFF2314	0.13	+0.6
2,340,547	+		GFF2314	0.13	-1.5
2,340,555	-		GFF2314	0.13	-0.3
2,340,555	-		GFF2314	0.13	-1.1
2,340,555	-		GFF2314	0.13	-0.5
2,340,555	-		GFF2314	0.13	-0.3
2,340,555	-		GFF2314	0.13	-0.2
2,340,555	-		GFF2314	0.13	-0.4
2,340,555	-		GFF2314	0.13	+0.8
2,340,555	-		GFF2314	0.13	+0.3
2,340,555	-		GFF2314	0.13	+1.5
2,340,560	-		GFF2314	0.13	-0.2
2,340,564	-		GFF2314	0.14	+0.9
2,340,635	+		GFF2314	0.17	-0.8
2,340,638	-		GFF2314	0.17	+0.1
2,340,658	-		GFF2314	0.18	+1.1
2,340,667	+		GFF2314	0.19	+0.8
2,340,669	+		GFF2314	0.19	-1.4
2,340,671	+		GFF2314	0.19	-0.5
2,340,692	-		GFF2314	0.20	-0.9
2,340,692	-		GFF2314	0.20	+0.1
2,340,700	-		GFF2314	0.20	-1.5
2,340,705	-		GFF2314	0.20	-0.6
2,340,734	-		GFF2314	0.22	-0.9
2,340,749	+		GFF2314	0.23	+0.6
2,340,752	-		GFF2314	0.23	-2.4
2,340,758	+		GFF2314	0.23	-0.4
2,340,758	+		GFF2314	0.23	-0.2
2,340,758	+		GFF2314	0.23	+0.7
2,340,766	-		GFF2314	0.23	+0.1
2,340,768	-		GFF2314	0.23	+0.4
2,340,818	-		GFF2314	0.26	-0.1
2,340,818	-		GFF2314	0.26	-0.9
2,340,823	-		GFF2314	0.26	+0.2
2,340,861	+		GFF2314	0.28	-1.2
2,340,867	-		GFF2314	0.28	+0.5
2,340,867	-		GFF2314	0.28	-0.3
2,340,960	-		GFF2314	0.33	-1.7
2,340,972	+		GFF2314	0.33	+1.3
2,340,973	+		GFF2314	0.33	+0.1
2,340,978	+		GFF2314	0.34	-1.7
2,341,008	+		GFF2314	0.35	-1.2
2,341,009	-		GFF2314	0.35	-0.4
2,341,061	-		GFF2314	0.38	+0.9
2,341,106	+		GFF2314	0.40	+0.8
2,341,109	-		GFF2314	0.40	-0.3
2,341,114	-		GFF2314	0.40	-0.2
2,341,132	+		GFF2314	0.41	-0.7
2,341,137	+		GFF2314	0.41	+0.3
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