Strain Fitness in Sphingobium sp. HT1-2 around GFF2227

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,248,738	+		GFF2226	0.63	+0.7
2,248,746	-		GFF2226	0.64	-2.3
2,248,748	+		GFF2226	0.64	+0.7
2,248,753	+		GFF2226	0.64	-0.4
2,248,769	+		GFF2226	0.65	-1.0
2,248,777	-		GFF2226	0.65	-0.6
2,248,795	-		GFF2226	0.66	+0.6
2,248,800	-		GFF2226	0.66	+1.1
2,248,841	-		GFF2226	0.67	+0.7
2,248,850	+		GFF2226	0.68	-0.7
2,248,850	+		GFF2226	0.68	-0.2
2,248,858	-		GFF2226	0.68	-0.1
2,248,858	-		GFF2226	0.68	+0.8
2,248,858	-		GFF2226	0.68	-0.8
2,248,858	-		GFF2226	0.68	-2.2
2,248,858	-		GFF2226	0.68	-1.8
2,248,858	-		GFF2226	0.68	-0.2
2,248,858	-		GFF2226	0.68	-0.7
2,248,860	+		GFF2226	0.68	-0.4
2,248,868	+		GFF2226	0.68	-0.3
2,248,868	-		GFF2226	0.68	-0.8
2,248,868	-		GFF2226	0.68	+0.6
2,248,868	-		GFF2226	0.68	-0.3
2,248,875	-		GFF2226	0.69	+0.8
2,248,878	-		GFF2226	0.69	-1.3
2,248,881	+		GFF2226	0.69	-0.9
2,248,887	+		GFF2226	0.69	+0.7
2,248,887	-		GFF2226	0.69	-0.9
2,248,889	-		GFF2226	0.69	-0.4
2,248,890	-		GFF2226	0.69	-0.1
2,248,892	+		GFF2226	0.69	-0.8
2,248,892	+		GFF2226	0.69	+0.3
2,248,892	+		GFF2226	0.69	+1.0
2,248,892	+		GFF2226	0.69	-0.4
2,248,894	+		GFF2226	0.69	+1.3
2,248,895	-		GFF2226	0.69	+0.4
2,248,899	+		GFF2226	0.69	-1.2
2,248,899	+		GFF2226	0.69	-0.3
2,248,899	+		GFF2226	0.69	-1.4
2,248,899	+		GFF2226	0.69	-0.3
2,248,900	-		GFF2226	0.69	-1.5
2,248,900	-		GFF2226	0.69	-0.8
2,248,900	-		GFF2226	0.69	+0.5
2,248,901	-		GFF2226	0.70	-0.3
2,248,904	+		GFF2226	0.70	-1.4
2,248,907	-		GFF2226	0.70	+0.8
2,248,907	-		GFF2226	0.70	+0.7
2,248,907	-		GFF2226	0.70	-0.8
2,248,907	-		GFF2226	0.70	-0.9
2,248,917	-		GFF2226	0.70	-1.1
2,248,917	-		GFF2226	0.70	+0.4
2,248,917	-		GFF2226	0.70	-0.4
2,248,917	-		GFF2226	0.70	+0.1
2,248,919	+		GFF2226	0.70	+0.2
2,248,919	+		GFF2226	0.70	+0.6
2,248,919	+		GFF2226	0.70	-1.0
2,248,919	+		GFF2226	0.70	+0.1
2,248,919	+		GFF2226	0.70	+0.6
2,248,924	+		GFF2226	0.70	-1.8
2,248,924	+		GFF2226	0.70	+1.1
2,248,927	-		GFF2226	0.70	+0.4
2,248,932	-		GFF2226	0.71	-0.2
2,248,937	+		GFF2226	0.71	+0.2
2,248,943	+		GFF2226	0.71	+1.0
2,248,951	+		GFF2226	0.71	+0.9
2,248,951	-		GFF2226	0.71	-0.2
2,248,961	+		GFF2226	0.72	+1.0
2,248,961	+		GFF2226	0.72	-1.0
2,248,969	-		GFF2226	0.72	-0.1
2,248,969	-		GFF2226	0.72	+0.4
2,248,993	-		GFF2226	0.73	-0.2
2,249,024	-		GFF2226	0.74	+0.2
2,249,032	+		GFF2226	0.74	-1.7
2,249,032	+		GFF2226	0.74	+1.3
2,249,040	-		GFF2226	0.75	-0.9
2,249,041	-		GFF2226	0.75	-0.1
2,249,064	+		GFF2226	0.76	-1.2
2,249,072	-		GFF2226	0.76	+0.5
2,249,072	-		GFF2226	0.76	-0.5
2,249,079	+		GFF2226	0.76	-1.1
2,249,084	+		GFF2226	0.76	+0.8
2,249,087	-		GFF2226	0.76	-0.4
2,249,087	-		GFF2226	0.76	+1.0
2,249,091	+		GFF2226	0.77	+0.5
2,249,091	+		GFF2226	0.77	+1.2
2,249,091	+		GFF2226	0.77	+0.2
2,249,091	+		GFF2226	0.77	+0.0
2,249,091	+		GFF2226	0.77	-0.6
2,249,091	+		GFF2226	0.77	+0.3
2,249,091	+		GFF2226	0.77	-0.5
2,249,091	+		GFF2226	0.77	-0.7
2,249,091	+		GFF2226	0.77	+0.4
2,249,091	+		GFF2226	0.77	-2.1
2,249,091	+		GFF2226	0.77	-0.3
2,249,097	+		GFF2226	0.77	-1.8
2,249,099	-		GFF2226	0.77	+0.5
2,249,099	-		GFF2226	0.77	-0.1
2,249,099	-		GFF2226	0.77	+0.9
2,249,103	+		GFF2226	0.77	-0.3
2,249,105	-		GFF2226	0.77	-0.2
2,249,111	+		GFF2226	0.77	-0.8
2,249,113	+		GFF2226	0.77	-1.7
2,249,113	+		GFF2226	0.77	-0.2
2,249,121	-		GFF2226	0.78	+0.3
2,249,126	-		GFF2226	0.78	-1.0
2,249,129	-		GFF2226	0.78	+0.6
2,249,139	-		GFF2226	0.78	+0.0
2,249,143	-		GFF2226	0.79	-0.4
2,249,154	+		GFF2226	0.79	-1.7
2,249,165	+		GFF2226	0.79	-0.0
2,249,165	+		GFF2226	0.79	+0.8
2,249,173	-		GFF2226	0.80	+2.0
2,249,186	-		GFF2226	0.80	+1.0
2,249,192	+		GFF2226	0.80	-0.8
2,249,222	+		GFF2226	0.81	-0.2
2,249,226	-		GFF2226	0.82	-0.1
2,249,227	+		GFF2226	0.82	-1.0
2,249,230	-		GFF2226	0.82	+0.4
2,249,235	-		GFF2226	0.82	+0.7
2,249,235	-		GFF2226	0.82	+1.4
2,249,235	-		GFF2226	0.82	-0.3
2,249,235	-		GFF2226	0.82	+0.4
2,249,235	-		GFF2226	0.82	-0.8
2,249,253	+		GFF2226	0.83	-1.2
2,249,261	-		GFF2226	0.83	-0.2
2,249,262	-		GFF2226	0.83	-0.1
2,249,279	+		GFF2226	0.84	+1.3
2,249,279	+		GFF2226	0.84	+0.1
2,249,280	-		GFF2226	0.84	-0.7
2,249,314	-		GFF2226	0.85	-1.1
2,249,323	+		GFF2226	0.85	-0.3
2,249,334	+		GFF2226	0.86	+0.4
2,249,335	+		GFF2226	0.86	-1.1
2,249,335	+		GFF2226	0.86	-0.9
2,249,344	+		GFF2226	0.86	-0.4
2,249,358	+		GFF2226	0.87	-2.2
2,249,358	+		GFF2226	0.87	+1.1
2,249,358	+		GFF2226	0.87	+1.4
2,249,358	+		GFF2226	0.87	-1.6
2,249,366	-		GFF2226	0.87	-1.5
2,249,366	-		GFF2226	0.87	-0.1
2,249,366	-		GFF2226	0.87	+0.6
2,249,376	-		GFF2226	0.87	-0.5
2,249,381	-		GFF2226	0.87	+0.2
2,249,381	-		GFF2226	0.87	+0.9
2,249,381	-		GFF2226	0.87	-0.0
2,249,395	-		GFF2226	0.88	-0.8
2,249,399	-		GFF2226	0.88	+0.2
2,249,413	+		GFF2226	0.89	-2.8
2,249,413	+		GFF2226	0.89	-0.7
2,249,413	+		GFF2226	0.89	-0.5
2,249,413	+		GFF2226	0.89	+0.8
2,249,413	+		GFF2226	0.89	+0.5
2,249,421	-		GFF2226	0.89	+0.5
2,249,421	-		GFF2226	0.89	-0.2
2,249,421	-		GFF2226	0.89	+0.1
2,249,421	-		GFF2226	0.89	+0.2
2,249,421	-		GFF2226	0.89	-1.0
2,249,435	+		GFF2226	0.89	-1.3
2,249,445	+		GFF2226	0.90	-0.2
2,249,453	-				+0.4
2,249,453	-				-1.2
2,249,453	-				+0.7
2,249,455	+				+0.8
2,249,455	+				+0.6
2,249,458	-				-1.8
2,249,458	-				+0.3
2,249,462	+				-0.8
2,249,462	+				-0.2
2,249,462	+				+2.0
2,249,463	-				-0.9
2,249,465	-				-1.8
2,249,470	-				-1.8
2,249,492	-				-0.8
2,249,497	+				-1.5
2,249,499	-				+0.7
2,249,500	-				-0.2
2,249,505	-				+0.3
2,249,525	+				+0.7
2,249,555	+				-0.5
2,249,555	+				+0.8
2,249,561	-				-0.7
2,249,565	+				-1.5
2,249,578	-				+0.9
2,249,578	-				-2.5
2,249,583	-				-1.7
2,249,583	-				-1.2
2,249,592	+				+0.2
2,249,600	+				-1.8
2,249,640	-				+1.5
2,249,640	-				-1.7
2,249,667	+				+0.4
2,249,672	+				-0.0
2,249,675	-				+0.1
2,249,675	-				-0.1
2,249,680	-				+0.3
2,249,680	-				+0.2
2,249,682	+				-0.8
2,249,682	+				+0.7
2,249,682	+				-0.2
2,249,682	+				-2.4
2,249,682	+				-0.8
2,249,682	+				-1.2
2,249,682	-				-0.5
2,249,685	-				-0.9
2,249,689	+				-0.5
2,249,690	-				-0.7
2,249,690	-				+0.0
2,249,690	-				+0.8
2,249,690	-				+0.0
2,249,711	+				-0.4
2,249,711	+				+0.5
2,249,711	+				+1.1
2,249,711	+				-0.3
2,249,711	+				-0.2
2,249,711	+				-0.1
2,249,719	-				-1.8
2,249,719	-				-0.2
2,249,719	-				-0.1
2,249,719	-				-1.2
2,249,724	-				+0.2
2,249,728	+				-0.8
2,249,728	+				-0.3
2,249,728	+				-0.9
2,249,728	+				-1.5
2,249,731	-				-1.6
2,249,731	-				+0.6
2,249,735	-				+0.0
2,249,736	-				+0.5
2,249,736	-				-0.8
2,249,736	-				+1.3
2,249,741	-				-0.3
2,249,764	+				-2.4
2,249,772	-				+1.3
2,249,787	+				-0.9
2,249,787	+				+0.5
2,249,847	+				-2.2
2,249,855	-				+1.7
2,249,857	+				-0.0
2,249,873	+				-1.1
2,249,883	+		GFF2227	0.10	+0.2
2,249,883	-		GFF2227	0.10	-1.5
2,249,888	+		GFF2227	0.11	+0.6
2,249,916	+		GFF2227	0.13	+0.0
2,249,931	+		GFF2227	0.14	+0.2
2,249,939	-		GFF2227	0.14	-0.3
2,249,939	-		GFF2227	0.14	+2.0
2,249,968	+		GFF2227	0.16	-0.5
2,250,009	+		GFF2227	0.19	-2.2
2,250,009	+		GFF2227	0.19	-1.5
2,250,012	+		GFF2227	0.19	-0.5
2,250,014	+		GFF2227	0.19	-2.8
2,250,014	+		GFF2227	0.19	+1.0
2,250,017	-		GFF2227	0.20	-1.5
2,250,019	+		GFF2227	0.20	+0.2
2,250,019	+		GFF2227	0.20	-1.6
2,250,019	+		GFF2227	0.20	+0.4
2,250,022	-		GFF2227	0.20	-0.2
2,250,027	-		GFF2227	0.20	+0.2
2,250,051	+		GFF2227	0.22	+0.2
2,250,089	+		GFF2227	0.25	-0.2
2,250,094	+		GFF2227	0.25	-0.2
2,250,094	+		GFF2227	0.25	+0.5
2,250,097	-		GFF2227	0.25	+0.1
2,250,099	+		GFF2227	0.25	-0.3
2,250,099	+		GFF2227	0.25	+0.1
2,250,099	+		GFF2227	0.25	+0.6
2,250,099	+		GFF2227	0.25	+0.3
2,250,099	+		GFF2227	0.25	+0.3
2,250,102	-		GFF2227	0.25	-1.7
2,250,107	-		GFF2227	0.26	+1.1
2,250,107	-		GFF2227	0.26	-1.5
2,250,107	-		GFF2227	0.26	+0.0
2,250,107	-		GFF2227	0.26	+0.6
2,250,107	-		GFF2227	0.26	-0.2
2,250,179	+		GFF2227	0.31	+1.0
2,250,181	-		GFF2227	0.31	-0.2
2,250,183	+		GFF2227	0.31	+1.3
2,250,183	+		GFF2227	0.31	-1.3
2,250,183	+		GFF2227	0.31	-0.3
2,250,183	+		GFF2227	0.31	-0.5
2,250,187	-		GFF2227	0.31	-2.3
2,250,191	-		GFF2227	0.32	+0.8
2,250,191	-		GFF2227	0.32	+1.0
2,250,191	-		GFF2227	0.32	-2.2
2,250,204	-		GFF2227	0.32	-0.9
2,250,223	+		GFF2227	0.34	-0.2
2,250,223	+		GFF2227	0.34	-0.3
2,250,231	-		GFF2227	0.34	-0.4
2,250,242	-		GFF2227	0.35	-2.1
2,250,257	-		GFF2227	0.36	+0.8
2,250,288	+		GFF2227	0.38	-0.2
2,250,301	+		GFF2227	0.39	+0.7
2,250,301	+		GFF2227	0.39	-0.7
2,250,301	+		GFF2227	0.39	-0.5
2,250,301	+		GFF2227	0.39	+0.3
2,250,317	+		GFF2227	0.40	-1.3
2,250,323	+		GFF2227	0.41	+0.7
2,250,325	-		GFF2227	0.41	+1.8
2,250,353	+		GFF2227	0.43	-1.4
2,250,353	+		GFF2227	0.43	+0.1
2,250,359	-		GFF2227	0.43	-0.5
2,250,359	-		GFF2227	0.43	+0.3
2,250,359	-		GFF2227	0.43	+0.2
2,250,361	-		GFF2227	0.43	-0.5
2,250,400	-		GFF2227	0.46	+0.6
2,250,422	+		GFF2227	0.47	+0.7
2,250,427	+		GFF2227	0.48	-1.0
2,250,427	+		GFF2227	0.48	-0.4
2,250,427	+		GFF2227	0.48	+0.2
2,250,427	+		GFF2227	0.48	+0.1
2,250,427	+		GFF2227	0.48	-2.7
2,250,427	+		GFF2227	0.48	-0.9
2,250,427	+		GFF2227	0.48	+0.7
2,250,427	+		GFF2227	0.48	+0.4
2,250,427	+		GFF2227	0.48	-0.5
2,250,428	-		GFF2227	0.48	-0.8
2,250,428	-		GFF2227	0.48	+0.8
2,250,435	-		GFF2227	0.48	-1.3
2,250,435	-		GFF2227	0.48	-0.3
2,250,435	-		GFF2227	0.48	+0.0
2,250,435	-		GFF2227	0.48	+0.3
2,250,435	-		GFF2227	0.48	+0.2
2,250,446	-		GFF2227	0.49	-0.4
2,250,454	-		GFF2227	0.50	+0.3
2,250,489	+		GFF2227	0.52	+0.6
2,250,494	+		GFF2227	0.52	+0.3
2,250,496	+		GFF2227	0.52	-1.1
2,250,500	+		GFF2227	0.53	-1.2
2,250,520	-		GFF2227	0.54	-0.8
2,250,531	+		GFF2227	0.55	-0.2
2,250,534	+		GFF2227	0.55	-0.3
2,250,539	-		GFF2227	0.55	+0.2
2,250,560	+		GFF2227	0.57	-1.7
2,250,560	+		GFF2227	0.57	+0.4
2,250,560	+		GFF2227	0.57	-1.8
2,250,565	+		GFF2227	0.57	-2.3
2,250,565	+		GFF2227	0.57	+1.3
2,250,566	+		GFF2227	0.57	-1.2
2,250,568	-		GFF2227	0.57	-1.0
2,250,575	-		GFF2227	0.58	-0.9
2,250,595	+		GFF2227	0.59	+0.3
2,250,595	+		GFF2227	0.59	-0.8
2,250,595	+		GFF2227	0.59	+0.0
2,250,600	+		GFF2227	0.60	-0.2
2,250,603	-		GFF2227	0.60	-0.7
2,250,603	-		GFF2227	0.60	-0.4
2,250,603	-		GFF2227	0.60	+0.1
2,250,603	-		GFF2227	0.60	+0.2
2,250,603	-		GFF2227	0.60	-0.9
2,250,613	-		GFF2227	0.60	+0.5
2,250,618	-		GFF2227	0.61	-0.7
2,250,618	-		GFF2227	0.61	-0.4
2,250,659	+		GFF2227	0.64	-1.8
2,250,685	-		GFF2227	0.65	-2.1
2,250,691	-		GFF2227	0.66	-0.8
2,250,699	+		GFF2227	0.66	+2.0
2,250,708	+		GFF2227	0.67	-1.3
2,250,709	+		GFF2227	0.67	-1.8
2,250,734	+		GFF2227	0.69	-0.5
2,250,742	-		GFF2227	0.69	-3.6
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2,250,757	+		GFF2227	0.70	-0.8
2,250,757	+		GFF2227	0.70	-0.4
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2,250,765	-		GFF2227	0.71	+0.8
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2,250,809	+		GFF2227	0.74	-1.9
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2,250,817	-		GFF2227	0.74	-0.1
2,250,817	-		GFF2227	0.74	+0.5
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2,250,823	-		GFF2227	0.75	-1.3
2,250,829	-		GFF2227	0.75	-0.8
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2,250,879	+		GFF2227	0.79	-0.5
2,250,879	+		GFF2227	0.79	+0.7
2,250,879	+		GFF2227	0.79	+0.2
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2,250,946	+		GFF2227	0.83	-1.1
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2,250,946	+		GFF2227	0.83	+0.9
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2,250,946	+		GFF2227	0.83	+0.2
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2,250,954	-		GFF2227	0.84	+0.9
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2,250,983	+		GFF2227	0.86	-0.4
2,250,983	+		GFF2227	0.86	-0.3
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2,250,991	-		GFF2227	0.86	-0.6
2,250,991	-		GFF2227	0.86	+0.5
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2,251,008	+		GFF2227	0.87	+0.3
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2,251,015	+		GFF2227	0.88	-1.5
2,251,015	+		GFF2227	0.88	+0.3
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2,251,023	-		GFF2227	0.89	+0.0
2,251,035	+		GFF2227	0.89	-0.3
2,251,044	-		GFF2227	0.90	-2.2
2,251,054	-				-1.8
2,251,067	-				-2.2
2,251,074	+				-1.0
2,251,074	+				-0.2
2,251,074	+				+0.3
2,251,074	+				-0.3
2,251,074	+				+0.2
2,251,074	+				-0.4
2,251,081	-				+0.0
2,251,082	-				+0.2
2,251,082	-				+0.4
2,251,102	+				-0.7
2,251,103	+				+0.5
2,251,106	-				-1.4
2,251,176	+				-1.2
2,251,216	+				-2.0
2,251,221	+				+0.8
2,251,223	-				-2.4
2,251,226	+				-1.4
2,251,229	-				+0.2
2,251,231	+				-0.7
2,251,231	-				+0.3
2,251,245	+				-2.9
2,251,246	+				-0.5
2,251,246	+				+1.6
2,251,249	-				-1.6
2,251,254	-				+0.5
2,251,269	+				-0.3
2,251,280	-				+0.0
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2,251,309	+				-0.4
2,251,316	+				+0.2
2,251,316	+				-0.9
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2,251,558	-		GFF2228	0.28	-0.4
2,251,558	-		GFF2228	0.28	-2.1
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