Strain Fitness in Sphingobium sp. HT1-2 around GFF2199

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,218,055	+		GFF2197	0.62	+0.3
2,218,065	+		GFF2197	0.62	+0.6
2,218,067	+		GFF2197	0.62	+1.4
2,218,080	-		GFF2197	0.63	-1.7
2,218,092	-		GFF2197	0.63	-2.5
2,218,101	+		GFF2197	0.64	-0.9
2,218,109	-		GFF2197	0.64	+0.2
2,218,109	-		GFF2197	0.64	-0.1
2,218,129	+		GFF2197	0.65	+0.7
2,218,129	+		GFF2197	0.65	-0.5
2,218,134	+		GFF2197	0.65	-0.8
2,218,134	+		GFF2197	0.65	+0.4
2,218,134	+		GFF2197	0.65	-0.3
2,218,134	+		GFF2197	0.65	-1.4
2,218,134	+		GFF2197	0.65	+0.2
2,218,134	+		GFF2197	0.65	-1.1
2,218,134	+		GFF2197	0.65	+0.8
2,218,134	+		GFF2197	0.65	+0.1
2,218,134	+		GFF2197	0.65	+0.2
2,218,134	+		GFF2197	0.65	+0.4
2,218,137	-		GFF2197	0.66	-1.0
2,218,142	-		GFF2197	0.66	+0.0
2,218,142	-		GFF2197	0.66	-1.4
2,218,142	-		GFF2197	0.66	-1.9
2,218,155	+		GFF2197	0.66	-0.5
2,218,157	+		GFF2197	0.67	-2.2
2,218,158	-		GFF2197	0.67	-0.4
2,218,162	+		GFF2197	0.67	+0.8
2,218,170	-		GFF2197	0.67	-1.5
2,218,184	+		GFF2197	0.68	+0.2
2,218,196	+		GFF2197	0.68	-0.1
2,218,204	-		GFF2197	0.69	+0.2
2,218,235	-		GFF2197	0.70	-0.5
2,218,238	-		GFF2197	0.71	-1.5
2,218,250	+		GFF2197	0.71	+0.5
2,218,250	+		GFF2197	0.71	+0.3
2,218,250	+		GFF2197	0.71	+0.3
2,218,253	-		GFF2197	0.71	+1.0
2,218,265	+		GFF2197	0.72	-0.6
2,218,266	-		GFF2197	0.72	+1.0
2,218,271	-		GFF2197	0.72	-0.7
2,218,385	+		GFF2197	0.78	+0.2
2,218,393	-		GFF2197	0.78	+0.3
2,218,393	-		GFF2197	0.78	-0.1
2,218,399	-		GFF2197	0.78	-2.4
2,218,399	-		GFF2197	0.78	-0.8
2,218,399	-		GFF2197	0.78	+0.7
2,218,399	-		GFF2197	0.78	-0.5
2,218,404	+		GFF2197	0.79	-0.3
2,218,412	+		GFF2197	0.79	+0.0
2,218,412	+		GFF2197	0.79	+0.2
2,218,418	+		GFF2197	0.79	-0.4
2,218,420	-		GFF2197	0.79	-2.1
2,218,436	-		GFF2197	0.80	-0.2
2,218,440	-		GFF2197	0.80	+0.2
2,218,447	-		GFF2197	0.81	+0.1
2,218,482	+		GFF2197	0.82	-1.5
2,218,487	+		GFF2197	0.83	-0.3
2,218,515	+		GFF2197	0.84	-1.4
2,218,521	-		GFF2197	0.84	-1.3
2,218,522	-		GFF2197	0.84	+0.2
2,218,525	+		GFF2197	0.85	-1.2
2,218,525	+		GFF2197	0.85	+0.1
2,218,525	-		GFF2197	0.85	-1.9
2,218,562	-		GFF2197	0.86	+1.7
2,218,590	-		GFF2197	0.88	-0.5
2,218,688	+				-1.0
2,218,688	+				-0.3
2,218,692	-				-0.9
2,218,693	+				+0.3
2,218,696	-				-0.2
2,218,698	+				-0.6
2,218,698	+				+0.8
2,218,706	-				+0.2
2,218,711	-				+0.7
2,218,721	+				+0.3
2,218,721	+				+2.0
2,218,721	+				+0.3
2,218,731	+				-0.8
2,218,731	+				+0.6
2,218,731	+				-0.3
2,218,804	+				-1.1
2,218,806	+				+1.6
2,218,812	-				+0.8
2,218,812	-				+0.3
2,218,813	+				+0.3
2,218,816	-				+1.3
2,218,826	-				+0.7
2,218,832	+				+0.1
2,218,840	-				-2.9
2,218,841	+				-2.2
2,218,847	+				-0.6
2,218,873	+		GFF2198	0.22	+0.1
2,218,913	+		GFF2198	0.49	+0.1
2,218,920	+		GFF2198	0.54	-1.1
2,218,920	+		GFF2198	0.54	-2.5
2,218,920	+		GFF2198	0.54	+0.3
2,218,921	-		GFF2198	0.55	+0.4
2,218,928	-		GFF2198	0.60	+0.7
2,218,928	-		GFF2198	0.60	-0.1
2,218,946	-		GFF2198	0.72	-0.0
2,218,964	-		GFF2198	0.85	+0.1
2,218,964	-		GFF2198	0.85	-0.7
2,218,968	+		GFF2198	0.88	+0.3
2,218,981	-				+0.2
2,218,986	+				-1.4
2,219,068	+		GFF2199	0.11	-1.3
2,219,069	+		GFF2199	0.11	+0.4
2,219,069	+		GFF2199	0.11	-1.1
2,219,131	-		GFF2199	0.26	+0.2
2,219,209	+		GFF2199	0.45	-0.3
2,219,214	+		GFF2199	0.47	+0.3
2,219,214	+		GFF2199	0.47	+0.7
2,219,214	+		GFF2199	0.47	+0.5
2,219,216	-		GFF2199	0.47	+0.4
2,219,221	-		GFF2199	0.48	+0.6
2,219,221	-		GFF2199	0.48	-1.9
2,219,222	-		GFF2199	0.49	-0.5
2,219,246	+		GFF2199	0.54	+0.2
2,219,246	+		GFF2199	0.54	+0.8
2,219,254	-		GFF2199	0.56	+0.3
2,219,307	-		GFF2199	0.69	-1.2
2,219,316	-		GFF2199	0.72	-0.9
2,219,332	+		GFF2199	0.75	+1.0
2,219,374	-		GFF2199	0.86	-0.4
2,219,374	-		GFF2199	0.86	+0.4
2,219,376	-		GFF2199	0.86	-0.8
2,219,413	+				+0.9
2,219,413	+				-2.1
2,219,461	+				-0.5
2,219,461	+				+0.3
2,219,461	-				-0.2
2,219,467	+				+0.2
2,219,483	+				+0.4
2,219,483	-				+0.3
2,219,504	-		GFF2200	0.13	+1.2
2,219,547	+		GFF2200	0.21	-1.9
2,219,564	+		GFF2200	0.24	-1.8
2,219,576	-		GFF2200	0.27	-0.7
2,219,577	-		GFF2200	0.27	+0.9
2,219,577	-		GFF2200	0.27	-0.4
2,219,589	-		GFF2200	0.29	+0.3
2,219,608	-		GFF2200	0.33	-0.0
2,219,614	-		GFF2200	0.34	-0.3
2,219,621	-		GFF2200	0.35	-0.3
2,219,623	-		GFF2200	0.35	-2.4
2,219,626	-		GFF2200	0.36	+0.5
2,219,626	-		GFF2200	0.36	-2.2
2,219,626	-		GFF2200	0.36	-0.9
2,219,626	-		GFF2200	0.36	-0.4
2,219,626	-		GFF2200	0.36	-0.0
2,219,640	-		GFF2200	0.38	-0.7
2,219,641	-		GFF2200	0.39	+0.8
2,219,655	-		GFF2200	0.41	+0.4
2,219,677	-		GFF2200	0.45	-0.2
2,219,677	-		GFF2200	0.45	-0.1
2,219,680	+		GFF2200	0.46	+0.6
2,219,687	-		GFF2200	0.47	+1.0
2,219,697	-		GFF2200	0.49	-0.8
2,219,724	-		GFF2200	0.54	-0.3
2,219,724	-		GFF2200	0.54	-1.0
2,219,731	-		GFF2200	0.55	-0.0
2,219,739	+		GFF2200	0.57	-0.6
2,219,757	+		GFF2200	0.60	-0.6
2,219,757	+		GFF2200	0.60	-0.4
2,219,757	+		GFF2200	0.60	-1.8
2,219,763	+		GFF2200	0.61	+0.2
2,219,763	+		GFF2200	0.61	+1.0
2,219,763	+		GFF2200	0.61	-0.7
2,219,771	-		GFF2200	0.63	+0.6
2,219,771	-		GFF2200	0.63	-0.7
2,219,771	-		GFF2200	0.63	+0.1
2,219,771	-		GFF2200	0.63	-0.6
2,219,771	-		GFF2200	0.63	-0.1
2,219,771	-		GFF2200	0.63	+1.3
2,219,771	-		GFF2200	0.63	-1.4
2,219,771	-		GFF2200	0.63	+1.1
2,219,802	+		GFF2200	0.68	+0.2
2,219,818	+		GFF2200	0.71	+0.7
2,219,828	-		GFF2200	0.73	-0.2
2,219,874	+		GFF2200	0.82	+0.9
2,219,874	+		GFF2200	0.82	+0.7
2,219,874	+		GFF2200	0.82	-0.0
2,219,874	+		GFF2200	0.82	-1.8
2,219,874	+		GFF2200	0.82	-0.9
2,219,874	+		GFF2200	0.82	+0.5
2,219,880	-		GFF2200	0.83	+0.3
2,219,881	+		GFF2200	0.83	+0.0
2,219,882	-		GFF2200	0.83	-0.7
2,219,882	-		GFF2200	0.83	-1.8
2,219,882	-		GFF2200	0.83	+0.3
2,219,882	-		GFF2200	0.83	-0.7
2,219,882	-		GFF2200	0.83	-2.5
2,219,882	-		GFF2200	0.83	-0.7
2,219,882	-		GFF2200	0.83	-1.5
2,219,882	-		GFF2200	0.83	+1.3
2,219,882	-		GFF2200	0.83	-1.3
2,219,882	-		GFF2200	0.83	+1.2
2,219,882	-		GFF2200	0.83	-0.8
2,219,882	-		GFF2200	0.83	-1.9
2,219,891	-		GFF2200	0.85	-0.1
2,219,892	-		GFF2200	0.85	-0.2
2,219,908	-		GFF2200	0.88	+1.3
2,219,910	-		GFF2200	0.88	+0.7
2,219,918	-		GFF2200	0.90	-0.0
2,219,922	-				-0.3
2,219,974	+				-0.2
2,219,992	-				+0.6
2,220,040	+		GFF2201	0.26	+0.2
2,220,048	-		GFF2201	0.29	-2.4
2,220,048	-		GFF2201	0.29	-1.8
2,220,053	-		GFF2201	0.31	+0.1
2,220,061	-		GFF2201	0.34	-2.0
2,220,070	+		GFF2201	0.37	+1.5
2,220,070	+		GFF2201	0.37	-1.7
2,220,075	+		GFF2201	0.39	+0.9
2,220,075	+		GFF2201	0.39	-0.1
2,220,075	+		GFF2201	0.39	-0.1
2,220,078	-		GFF2201	0.40	+0.9
2,220,078	-		GFF2201	0.40	-0.2
2,220,083	-		GFF2201	0.42	-0.7
2,220,083	-		GFF2201	0.42	+0.6
2,220,088	-		GFF2201	0.44	-0.6
2,220,088	-		GFF2201	0.44	-0.3
2,220,088	-		GFF2201	0.44	-0.6
2,220,141	+		GFF2201	0.63	+0.4
2,220,141	+		GFF2201	0.63	-0.4
2,220,141	+		GFF2201	0.63	-0.8
2,220,141	+		GFF2201	0.63	+1.1
2,220,141	+		GFF2201	0.63	-0.3
2,220,141	+		GFF2201	0.63	+0.5
2,220,149	-		GFF2201	0.66	-0.2
2,220,149	-		GFF2201	0.66	-0.8
2,220,149	-		GFF2201	0.66	-1.4
2,220,149	-		GFF2201	0.66	+0.2
2,220,157	-		GFF2201	0.69	-0.3
2,220,157	-		GFF2201	0.69	-0.1
2,220,159	-		GFF2201	0.70	+0.0
2,220,159	-		GFF2201	0.70	+0.6
2,220,161	+		GFF2201	0.71	+0.9
2,220,164	-		GFF2201	0.72	+0.9
2,220,164	-		GFF2201	0.72	+0.3
2,220,164	-		GFF2201	0.72	+0.6
2,220,169	-		GFF2201	0.74	+0.5
2,220,180	+		GFF2201	0.78	-0.2
2,220,180	+		GFF2201	0.78	+0.1
2,220,181	+		GFF2201	0.78	-1.4
2,220,183	-		GFF2201	0.79	-0.2
2,220,187	-		GFF2201	0.80	-0.7
2,220,188	-		GFF2201	0.81	+0.4
2,220,188	-		GFF2201	0.81	-0.3
2,220,194	-		GFF2201	0.83	-1.8
2,220,228	+				+0.3
2,220,228	+				+1.4
2,220,246	+				-2.0
2,220,254	-				-0.3
2,220,256	+				+1.2
2,220,256	+				-2.0
2,220,261	+				-0.5
2,220,269	-				-1.1
2,220,281	+				+0.2
2,220,364	+		GFF2202	0.25	-1.5
2,220,364	+		GFF2202	0.25	-1.3
2,220,364	+		GFF2202	0.25	-1.1
2,220,372	-		GFF2202	0.27	+0.3
2,220,372	-		GFF2202	0.27	-2.3
2,220,372	-		GFF2202	0.27	-0.4
2,220,372	-		GFF2202	0.27	-0.4
2,220,372	-		GFF2202	0.27	-1.0
2,220,397	-		GFF2202	0.31	-0.2
2,220,397	-		GFF2202	0.31	+1.2
2,220,397	-		GFF2202	0.31	+0.1
2,220,397	-		GFF2202	0.31	+1.2
2,220,397	-		GFF2202	0.31	+0.8
2,220,397	-		GFF2202	0.31	-1.8