Strain Fitness in Sphingobium sp. HT1-2 around GFF2195

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,214,469	+				+0.5
2,214,469	+				-1.2
2,214,475	-				+0.4
2,214,477	-				+0.0
2,214,477	-				-1.0
2,214,547	-				-1.1
2,214,547	-				+0.0
2,214,547	-				-0.4
2,214,559	-				+1.5
2,214,568	+				-0.8
2,214,575	+				+0.6
2,214,583	-				-0.7
2,214,593	+				-2.2
2,214,593	+				-1.3
2,214,598	+				+0.8
2,214,598	+				+0.4
2,214,606	-				-1.4
2,214,606	-				+0.8
2,214,615	+				-0.0
2,214,615	+				-1.7
2,214,615	+				-1.0
2,214,621	-				+1.2
2,214,621	-				+0.5
2,214,627	-				+0.3
2,214,635	+				-0.7
2,214,656	-				-1.3
2,214,656	-				+1.2
2,214,695	-				-0.8
2,214,701	+				-1.7
2,214,701	+				+0.1
2,214,714	-				-0.2
2,214,720	+				+1.1
2,214,729	+				-0.8
2,214,732	-				-2.3
2,214,795	+				-1.9
2,214,795	+				-1.8
2,214,795	+				-0.7
2,214,795	+				+1.2
2,214,803	-				+0.1
2,214,803	-				-0.1
2,214,803	-				+0.3
2,214,803	-				+1.3
2,214,806	+				-0.1
2,214,806	+				+0.3
2,214,808	-				-0.2
2,214,814	-				-0.2
2,214,814	-				+1.3
2,214,821	-				-0.3
2,214,892	+				+1.1
2,214,909	+				+0.1
2,214,917	+				+0.4
2,214,927	+				+0.2
2,214,927	+				+0.1
2,214,932	+				-2.1
2,214,935	-				-1.4
2,214,944	-				+0.9
2,214,945	-				-0.0
2,214,947	+				-0.2
2,214,951	+				-0.5
2,214,951	+				-1.2
2,214,955	-				-1.4
2,214,955	-				+0.5
2,214,955	-				-0.4
2,214,961	+				-0.3
2,214,961	+				-1.7
2,214,969	-				+0.1
2,215,000	+				+0.1
2,215,000	+				+0.5
2,215,000	+				+1.2
2,215,000	+				-0.3
2,215,000	+				+1.5
2,215,000	+				+0.8
2,215,008	-				-0.3
2,215,046	+		GFF2194	0.11	+1.2
2,215,046	+		GFF2194	0.11	+0.1
2,215,046	+		GFF2194	0.11	-1.2
2,215,046	+		GFF2194	0.11	+0.4
2,215,046	+		GFF2194	0.11	+1.2
2,215,049	+		GFF2194	0.12	-1.9
2,215,049	-		GFF2194	0.12	+0.1
2,215,051	+		GFF2194	0.12	-0.6
2,215,054	-		GFF2194	0.13	+0.8
2,215,054	-		GFF2194	0.13	-0.4
2,215,054	-		GFF2194	0.13	+0.2
2,215,057	+		GFF2194	0.14	+0.0
2,215,081	+		GFF2194	0.19	+0.1
2,215,081	+		GFF2194	0.19	-1.8
2,215,089	-		GFF2194	0.20	+0.5
2,215,089	-		GFF2194	0.20	-0.5
2,215,132	+		GFF2194	0.30	-0.0
2,215,153	-		GFF2194	0.34	-0.7
2,215,155	+		GFF2194	0.34	-0.3
2,215,174	-		GFF2194	0.38	-1.3
2,215,200	+		GFF2194	0.44	+0.5
2,215,206	-		GFF2194	0.45	-0.6
2,215,214	-		GFF2194	0.47	+0.3
2,215,241	-		GFF2194	0.53	-1.2
2,215,246	+		GFF2194	0.54	+1.1
2,215,273	+		GFF2194	0.59	-0.3
2,215,285	+		GFF2194	0.62	+1.3
2,215,306	+		GFF2194	0.66	-1.4
2,215,311	-		GFF2194	0.68	-0.2
2,215,316	-		GFF2194	0.69	-1.3
2,215,331	-		GFF2194	0.72	+0.3
2,215,354	+		GFF2194	0.77	+0.2
2,215,357	-		GFF2194	0.77	+1.4
2,215,362	-		GFF2194	0.78	-1.8
2,215,378	+		GFF2194	0.82	+0.8
2,215,378	+		GFF2194	0.82	+0.5
2,215,378	+		GFF2194	0.82	-1.1
2,215,387	+		GFF2194	0.84	+0.3
2,215,394	-		GFF2194	0.85	-0.7
2,215,397	-		GFF2194	0.86	+0.2
2,215,402	-		GFF2194	0.87	-0.4
2,215,408	+		GFF2194	0.88	+0.5
2,215,420	+				+1.6
2,215,428	+				+0.6
2,215,428	-				-0.2
2,215,428	-				+0.8
2,215,428	-				-1.3
2,215,454	-				+0.0
2,215,456	-				+0.4
2,215,464	+				+1.2
2,215,472	-				+0.6
2,215,472	-				-0.3
2,215,488	+				+0.1
2,215,488	+				-0.0
2,215,497	+				+0.6
2,215,497	+				+0.7
2,215,499	+				-0.8
2,215,505	-				-0.8
2,215,505	-				+0.1
2,215,559	+		GFF2195	0.16	-1.3
2,215,559	+		GFF2195	0.16	-0.5
2,215,565	-		GFF2195	0.17	-0.5
2,215,567	-		GFF2195	0.17	+1.0
2,215,579	+		GFF2195	0.19	+0.7
2,215,579	+		GFF2195	0.19	-0.5
2,215,579	+		GFF2195	0.19	+0.6
2,215,579	+		GFF2195	0.19	-0.4
2,215,587	-		GFF2195	0.21	+0.1
2,215,587	-		GFF2195	0.21	+0.6
2,215,589	+		GFF2195	0.21	-1.3
2,215,589	+		GFF2195	0.21	+0.3
2,215,594	+		GFF2195	0.22	-1.7
2,215,597	-		GFF2195	0.22	+1.0
2,215,597	-		GFF2195	0.22	-2.0
2,215,597	-		GFF2195	0.22	+0.3
2,215,597	-		GFF2195	0.22	-0.1
2,215,597	-		GFF2195	0.22	-1.4
2,215,597	-		GFF2195	0.22	+1.0
2,215,597	-		GFF2195	0.22	-0.2
2,215,597	-		GFF2195	0.22	-1.6
2,215,599	+		GFF2195	0.23	-0.0
2,215,628	-		GFF2195	0.28	+1.0
2,215,628	-		GFF2195	0.28	-0.9
2,215,644	+		GFF2195	0.30	-0.4
2,215,675	-		GFF2195	0.36	-0.5
2,215,703	+		GFF2195	0.40	+1.7
2,215,703	+		GFF2195	0.40	+0.5
2,215,707	-		GFF2195	0.41	-0.1
2,215,709	+		GFF2195	0.41	+0.2
2,215,709	+		GFF2195	0.41	-0.0
2,215,714	+		GFF2195	0.42	-0.3
2,215,717	-		GFF2195	0.43	-0.0
2,215,717	-		GFF2195	0.43	+0.4
2,215,749	-		GFF2195	0.48	-1.2
2,215,771	-		GFF2195	0.52	-1.2
2,215,783	+		GFF2195	0.54	+0.0
2,215,788	+		GFF2195	0.55	+0.2
2,215,818	+		GFF2195	0.60	-1.0
2,215,826	+		GFF2195	0.61	-0.2
2,215,826	+		GFF2195	0.61	-1.1
2,215,826	+		GFF2195	0.61	-0.7
2,215,826	+		GFF2195	0.61	-1.2
2,215,834	-		GFF2195	0.63	-1.2
2,215,834	-		GFF2195	0.63	+1.5
2,215,834	-		GFF2195	0.63	-0.8
2,215,861	-		GFF2195	0.67	-0.3
2,215,862	-		GFF2195	0.67	+0.2
2,215,862	-		GFF2195	0.67	+0.8
2,215,872	+		GFF2195	0.69	+0.6
2,215,872	+		GFF2195	0.69	-0.0
2,215,880	-		GFF2195	0.70	-0.9
2,215,880	-		GFF2195	0.70	+0.3
2,215,880	-		GFF2195	0.70	-0.8
2,215,880	-		GFF2195	0.70	+1.2
2,215,880	-		GFF2195	0.70	-0.5
2,215,880	-		GFF2195	0.70	+0.1
2,215,890	+		GFF2195	0.72	-0.2
2,215,890	+		GFF2195	0.72	+0.4
2,215,898	-		GFF2195	0.73	+0.9
2,215,922	+		GFF2195	0.78	-1.0
2,215,925	-		GFF2195	0.78	+0.4
2,215,955	+		GFF2195	0.83	-1.8
2,215,955	+		GFF2195	0.83	+0.7
2,215,955	+		GFF2195	0.83	-0.9
2,215,955	+		GFF2195	0.83	-0.6
2,215,955	+		GFF2195	0.83	+0.1
2,215,962	-		GFF2195	0.84	-0.9
2,215,963	-		GFF2195	0.85	-1.3
2,215,963	-		GFF2195	0.85	-0.6
2,215,963	-		GFF2195	0.85	-0.3
2,215,963	-		GFF2195	0.85	-1.3
2,215,963	-		GFF2195	0.85	+0.9
2,215,991	+		GFF2195	0.89	-0.2
2,215,999	-				-0.0
2,215,999	-				-1.3
2,215,999	-				+0.1
2,216,009	-				-0.4
2,216,010	-				-0.8
2,216,010	-				-0.1
2,216,031	+				-0.2
2,216,037	+				+0.1
2,216,045	-				+1.7
2,216,052	+				-2.6
2,216,052	+				+0.6
2,216,080	+				+0.8
2,216,082	-				-0.4
2,216,087	+		GFF2196	0.11	-2.7
2,216,089	+		GFF2196	0.11	+0.2
2,216,095	-		GFF2196	0.13	+1.3
2,216,103	-		GFF2196	0.16	+0.6
2,216,103	-		GFF2196	0.16	+0.8
2,216,108	-		GFF2196	0.17	-0.1
2,216,115	-		GFF2196	0.19	+0.8
2,216,129	-		GFF2196	0.24	-0.5
2,216,134	+		GFF2196	0.25	-0.1
2,216,134	+		GFF2196	0.25	-0.4
2,216,140	-		GFF2196	0.27	+0.1
2,216,142	-		GFF2196	0.28	-0.3
2,216,144	+		GFF2196	0.29	-0.7
2,216,152	-		GFF2196	0.31	+0.9
2,216,152	-		GFF2196	0.31	+0.7
2,216,152	-		GFF2196	0.31	+0.5
2,216,157	-		GFF2196	0.33	+0.0
2,216,165	+		GFF2196	0.35	-0.4
2,216,165	+		GFF2196	0.35	-0.5
2,216,165	+		GFF2196	0.35	-0.6
2,216,165	+		GFF2196	0.35	+0.4
2,216,165	+		GFF2196	0.35	-0.2
2,216,167	-		GFF2196	0.36	-0.8
2,216,173	-		GFF2196	0.38	-0.1
2,216,173	-		GFF2196	0.38	-1.3
2,216,209	-		GFF2196	0.49	-2.4
2,216,214	+		GFF2196	0.51	-1.1
2,216,214	+		GFF2196	0.51	-1.1
2,216,235	+		GFF2196	0.57	+0.1
2,216,243	-		GFF2196	0.60	+0.4
2,216,243	-		GFF2196	0.60	-0.6
2,216,259	+		GFF2196	0.65	+0.3
2,216,259	+		GFF2196	0.65	-0.3
2,216,259	+		GFF2196	0.65	-0.9
2,216,259	+		GFF2196	0.65	-2.2
2,216,259	+		GFF2196	0.65	+0.6
2,216,267	-		GFF2196	0.67	-0.1
2,216,267	-		GFF2196	0.67	-1.3
2,216,267	-		GFF2196	0.67	-0.5
2,216,269	+		GFF2196	0.68	-2.2
2,216,271	+		GFF2196	0.69	+1.2
2,216,271	+		GFF2196	0.69	-0.2
2,216,271	+		GFF2196	0.69	+0.4
2,216,279	+		GFF2196	0.71	-1.7
2,216,279	+		GFF2196	0.71	-2.4
2,216,279	+		GFF2196	0.71	+0.2
2,216,279	+		GFF2196	0.71	-0.7
2,216,279	+		GFF2196	0.71	-1.0
2,216,279	+		GFF2196	0.71	-0.2
2,216,279	+		GFF2196	0.71	-2.3
2,216,279	+		GFF2196	0.71	-0.5
2,216,279	+		GFF2196	0.71	+0.4
2,216,279	+		GFF2196	0.71	+0.6
2,216,279	+		GFF2196	0.71	-0.2
2,216,279	+		GFF2196	0.71	+0.7
2,216,279	-		GFF2196	0.71	-0.3
2,216,279	-		GFF2196	0.71	-1.5
2,216,284	-		GFF2196	0.73	+1.4
2,216,286	+		GFF2196	0.73	+0.9
2,216,286	-		GFF2196	0.73	+0.8
2,216,287	-		GFF2196	0.74	-0.4
2,216,287	-		GFF2196	0.74	+0.0
2,216,287	-		GFF2196	0.74	-1.7
2,216,287	-		GFF2196	0.74	+0.4
2,216,287	-		GFF2196	0.74	+0.7
2,216,287	-		GFF2196	0.74	-0.2
2,216,319	+		GFF2196	0.84	-0.6
2,216,335	+		GFF2196	0.89	+0.2
2,216,335	+		GFF2196	0.89	-0.4
2,216,352	-				-0.4
2,216,379	+				-0.4
2,216,388	-				+0.4
2,216,393	-				-0.1
2,216,394	+				-0.5
2,216,407	+				-1.1
2,216,407	+				-0.3
2,216,414	+				-1.8
2,216,648	-				-2.3
2,216,656	+				+0.2
2,216,656	+				+1.2
2,216,754	+				+0.5
2,216,761	+				-2.1
2,216,761	+				+0.1
2,216,761	+				-0.6
2,216,763	-				-0.3
2,216,768	-				+1.7
2,216,769	-				-1.3
2,216,769	-				+0.9
2,216,769	-				+0.1
2,216,781	+				-0.4
2,216,795	+				-2.2
2,216,796	-				-0.4
2,216,830	-				+0.6
2,216,830	-				+0.2
2,216,832	+				-0.6
2,216,871	-				+0.4
2,216,904	-				-0.1
2,216,916	+				+0.4
2,216,935	+				-0.1
2,216,937	+				-0.6
2,216,937	+				+1.9
2,216,943	+				-0.0
2,216,945	-				+0.6
2,216,945	-				-1.8
2,216,945	-				+1.0
2,216,957	+				-1.9
2,216,971	+				-0.6
2,216,971	+				-0.6
2,216,971	+				-1.1
2,216,971	+				+0.1
2,216,971	+				+0.7
2,216,976	+				-0.2
2,216,976	+				-1.8
2,216,979	-				-1.4
2,216,983	+				+1.6
2,216,986	-				-0.6
2,216,989	+				-1.2
2,216,994	+				+0.3
2,216,994	+				-0.6
2,216,994	+				-0.8
2,217,002	-		GFF2197	0.10	+0.2
2,217,002	-		GFF2197	0.10	+1.1
2,217,013	+		GFF2197	0.11	+0.5
2,217,029	-		GFF2197	0.11	-3.2