Strain Fitness in Sphingobium sp. HT1-2 around GFF2179

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,194,525	+				-0.2
2,194,525	+				-0.4
2,194,533	-				+0.3
2,194,533	-				+1.5
2,194,535	-				-0.7
2,194,562	-		GFF2176	0.12	+0.6
2,194,601	-		GFF2176	0.30	+0.4
2,194,607	+		GFF2176	0.33	+0.8
2,194,615	-		GFF2176	0.37	-0.1
2,194,626	+		GFF2176	0.42	-0.5
2,194,626	+		GFF2176	0.42	-0.4
2,194,658	+		GFF2176	0.56	-2.4
2,194,658	+		GFF2176	0.56	-0.4
2,194,666	-		GFF2176	0.60	-0.1
2,194,666	-		GFF2176	0.60	-0.7
2,194,669	+		GFF2176	0.62	-1.8
2,194,669	+		GFF2176	0.62	+0.0
2,194,669	+		GFF2176	0.62	-0.4
2,194,669	+		GFF2176	0.62	-1.0
2,194,705	+		GFF2176	0.78	-0.4
2,194,726	-		GFF2176	0.88	-0.2
2,194,745	+				+0.2
2,194,745	+				+0.4
2,194,754	-				+0.8
2,194,761	+				-2.2
2,194,782	+				+0.2
2,194,795	+				-1.8
2,194,796	-				-0.2
2,194,798	-				-1.1
2,194,798	-				-0.4
2,194,824	+				+1.0
2,194,832	-		GFF2177	0.13	+0.5
2,194,841	+		GFF2177	0.17	-1.0
2,194,841	+		GFF2177	0.17	+1.0
2,194,841	+		GFF2177	0.17	+0.4
2,194,859	-		GFF2177	0.25	+0.2
2,194,861	+		GFF2177	0.26	+0.5
2,194,869	-		GFF2177	0.30	-0.4
2,194,901	+		GFF2177	0.45	+0.3
2,194,902	+		GFF2177	0.46	-0.3
2,194,921	-		GFF2177	0.54	-0.0
2,194,922	-		GFF2177	0.55	+1.0
2,194,944	+		GFF2177	0.65	-0.0
2,195,006	+				-0.5
2,195,006	+				-0.5
2,195,006	+				-0.4
2,195,011	+				-0.7
2,195,014	-				-1.0
2,195,014	-				-2.0
2,195,014	-				-1.5
2,195,014	-				+0.4
2,195,014	-				+0.6
2,195,019	-				+0.0
2,195,019	-				-0.1
2,195,050	-				+0.4
2,195,082	-				-0.1
2,195,092	+				+0.2
2,195,132	+		GFF2178	0.21	+0.3
2,195,132	+		GFF2178	0.21	+0.0
2,195,132	+		GFF2178	0.21	-0.1
2,195,140	-		GFF2178	0.24	-1.1
2,195,145	-		GFF2178	0.26	-0.7
2,195,147	-		GFF2178	0.26	+0.9
2,195,154	-		GFF2178	0.29	-1.7
2,195,156	+		GFF2178	0.30	+0.8
2,195,156	+		GFF2178	0.30	-0.4
2,195,164	-		GFF2178	0.33	+0.3
2,195,164	-		GFF2178	0.33	+0.5
2,195,164	-		GFF2178	0.33	-0.2
2,195,164	-		GFF2178	0.33	+0.8
2,195,178	-		GFF2178	0.38	+0.1
2,195,178	-		GFF2178	0.38	+0.6
2,195,179	+		GFF2178	0.38	-1.5
2,195,187	-		GFF2178	0.41	-0.1
2,195,187	-		GFF2178	0.41	-0.3
2,195,194	+		GFF2178	0.44	-0.8
2,195,203	-		GFF2178	0.47	-1.7
2,195,203	-		GFF2178	0.47	-0.7
2,195,208	-		GFF2178	0.49	-0.8
2,195,208	-		GFF2178	0.49	-1.3
2,195,227	+		GFF2178	0.56	+2.2
2,195,230	+		GFF2178	0.57	+0.1
2,195,240	-		GFF2178	0.61	-2.1
2,195,272	-		GFF2178	0.73	-1.7
2,195,276	-		GFF2178	0.74	+1.5
2,195,280	+		GFF2178	0.76	-0.6
2,195,280	+		GFF2178	0.76	-0.3
2,195,288	-		GFF2178	0.79	+0.0
2,195,288	-		GFF2178	0.79	+0.2
2,195,295	+		GFF2178	0.81	+0.1
2,195,301	-		GFF2178	0.83	-0.0
2,195,301	-		GFF2178	0.83	-0.2
2,195,301	-		GFF2178	0.83	+1.4
2,195,301	-		GFF2178	0.83	+0.5
2,195,301	-		GFF2178	0.83	+0.2
2,195,339	+				-0.2
2,195,344	+				+0.4
2,195,347	-				-0.1
2,195,347	-				+0.2
2,195,356	+				+1.5
2,195,396	+				-0.8
2,195,396	+				-0.2
2,195,396	+				+0.1
2,195,404	-				+0.6
2,195,404	-				-1.4
2,195,404	-				-0.3
2,195,404	-				+0.3
2,195,406	-				+0.7
2,195,406	-				-0.2
2,195,417	+				+0.6
2,195,422	+				+1.2
2,195,428	-				-0.5
2,195,432	+				+0.7
2,195,435	+				-1.4
2,195,435	-				+0.1
2,195,435	-				-0.7
2,195,435	-				+0.6
2,195,435	-				+0.3
2,195,459	+				-2.5
2,195,483	-				-0.2
2,195,485	+				-0.5
2,195,493	+				+0.2
2,195,501	-				-0.9
2,195,511	+				-0.3
2,195,519	+				-0.4
2,195,519	+				-0.3
2,195,519	-				-1.2
2,195,526	+				-0.5
2,195,537	-		GFF2179	0.11	+0.1
2,195,603	+		GFF2179	0.56	+0.2
2,195,603	+		GFF2179	0.56	+0.1
2,195,609	-		GFF2179	0.60	+0.7
2,195,640	-		GFF2179	0.81	+0.8
2,195,640	-		GFF2179	0.81	+0.4
2,195,645	-		GFF2179	0.84	-0.4
2,195,648	+		GFF2179	0.86	-0.9
2,195,678	-				-2.2
2,195,705	-				-1.1
2,195,707	+				-1.8
2,195,722	-				+0.4
2,195,730	-				+0.9
2,195,735	+				+0.2
2,195,744	+				-1.5
2,195,809	-				-0.1
2,195,827	+				-0.6
2,195,829	+				-1.5
2,195,834	+		GFF2180	0.10	+0.1
2,195,837	-		GFF2180	0.10	-0.4
2,195,842	-		GFF2180	0.11	-0.2
2,195,852	+		GFF2180	0.11	-1.8
2,195,879	+		GFF2180	0.13	-0.4
2,195,879	-		GFF2180	0.13	+0.1
2,195,879	-		GFF2180	0.13	-0.4
2,195,881	+		GFF2180	0.13	-0.2
2,195,881	-		GFF2180	0.13	-2.4
2,195,887	+		GFF2180	0.13	-0.1
2,195,887	+		GFF2180	0.13	-1.2
2,195,887	+		GFF2180	0.13	-0.3
2,195,897	+		GFF2180	0.14	-0.7
2,195,897	+		GFF2180	0.14	-0.8
2,195,912	+		GFF2180	0.15	+0.4
2,195,914	+		GFF2180	0.15	-0.9
2,195,920	-		GFF2180	0.15	+1.8
2,195,922	-		GFF2180	0.15	-1.5
2,195,946	+		GFF2180	0.17	+0.8
2,195,948	+		GFF2180	0.17	-0.1
2,195,956	+		GFF2180	0.17	-0.8
2,195,956	+		GFF2180	0.17	-0.0
2,195,964	-		GFF2180	0.18	+0.0
2,195,964	-		GFF2180	0.18	-1.8
2,195,969	-		GFF2180	0.18	-2.8
2,195,978	+		GFF2180	0.19	-1.3
2,195,978	+		GFF2180	0.19	-0.5
2,195,978	+		GFF2180	0.19	+1.0
2,195,978	+		GFF2180	0.19	-0.0
2,195,978	+		GFF2180	0.19	+0.2
2,195,978	+		GFF2180	0.19	-0.7
2,195,978	+		GFF2180	0.19	-0.3
2,195,986	-		GFF2180	0.19	+0.9
2,195,993	+		GFF2180	0.20	+0.9
2,196,023	+		GFF2180	0.22	+0.2
2,196,046	+		GFF2180	0.23	+0.2
2,196,049	+		GFF2180	0.23	-1.4
2,196,054	-		GFF2180	0.23	-1.7
2,196,057	-		GFF2180	0.24	-2.1
2,196,065	+		GFF2180	0.24	-1.0
2,196,065	+		GFF2180	0.24	-1.4
2,196,070	+		GFF2180	0.24	-0.0
2,196,070	+		GFF2180	0.24	-0.1
2,196,072	+		GFF2180	0.25	-0.2
2,196,073	-		GFF2180	0.25	-1.0
2,196,080	-		GFF2180	0.25	-0.3
2,196,080	-		GFF2180	0.25	+0.2
2,196,080	-		GFF2180	0.25	-0.8
2,196,096	-		GFF2180	0.26	-0.7
2,196,113	+		GFF2180	0.27	-1.5
2,196,118	+		GFF2180	0.27	-0.6
2,196,121	-		GFF2180	0.27	-0.1
2,196,178	+		GFF2180	0.31	+0.8
2,196,188	-		GFF2180	0.32	-0.9
2,196,193	+		GFF2180	0.32	-1.1
2,196,193	+		GFF2180	0.32	-0.6
2,196,193	+		GFF2180	0.32	-0.3
2,196,193	+		GFF2180	0.32	-0.3
2,196,196	-		GFF2180	0.32	-0.5
2,196,214	-		GFF2180	0.33	-1.2
2,196,216	+		GFF2180	0.33	-0.4
2,196,224	-		GFF2180	0.34	+0.1
2,196,224	-		GFF2180	0.34	+1.4
2,196,237	-		GFF2180	0.34	+1.4
2,196,255	+		GFF2180	0.36	-0.7
2,196,261	+		GFF2180	0.36	-1.2
2,196,261	+		GFF2180	0.36	-0.4
2,196,282	+		GFF2180	0.37	-0.1
2,196,284	+		GFF2180	0.37	+0.1
2,196,299	+		GFF2180	0.38	+0.8
2,196,307	-		GFF2180	0.39	+0.5
2,196,313	+		GFF2180	0.39	-0.5
2,196,317	-		GFF2180	0.39	-0.7
2,196,356	+		GFF2180	0.42	-0.7
2,196,381	-		GFF2180	0.43	-1.2
2,196,383	+		GFF2180	0.43	-0.7
2,196,391	-		GFF2180	0.44	+0.2
2,196,394	+		GFF2180	0.44	-2.8
2,196,399	+		GFF2180	0.44	-1.3
2,196,409	+		GFF2180	0.45	+0.2
2,196,409	+		GFF2180	0.45	+0.7
2,196,417	-		GFF2180	0.45	-0.2
2,196,418	+		GFF2180	0.45	-0.3
2,196,431	+		GFF2180	0.46	+0.7
2,196,431	+		GFF2180	0.46	-0.2
2,196,431	-		GFF2180	0.46	+0.9
2,196,439	-		GFF2180	0.47	-1.7
2,196,445	+		GFF2180	0.47	+0.0
2,196,458	-		GFF2180	0.48	-2.2
2,196,458	-		GFF2180	0.48	+1.9
2,196,460	+		GFF2180	0.48	-0.1
2,196,463	-		GFF2180	0.48	+0.6
2,196,468	-		GFF2180	0.48	-0.5
2,196,486	+		GFF2180	0.50	+1.0
2,196,546	-		GFF2180	0.53	+0.2
2,196,549	+		GFF2180	0.53	-1.5
2,196,556	+		GFF2180	0.54	-1.2
2,196,578	+		GFF2180	0.55	+0.7
2,196,586	-		GFF2180	0.56	+0.2
2,196,589	+		GFF2180	0.56	-0.7
2,196,589	+		GFF2180	0.56	-0.4
2,196,589	+		GFF2180	0.56	+0.2
2,196,589	+		GFF2180	0.56	-0.7
2,196,597	-		GFF2180	0.56	-0.4
2,196,597	-		GFF2180	0.56	-0.2
2,196,597	-		GFF2180	0.56	-1.4
2,196,597	-		GFF2180	0.56	-1.5
2,196,619	-		GFF2180	0.58	+0.6
2,196,644	+		GFF2180	0.59	-1.1
2,196,652	-		GFF2180	0.60	+0.2