Strain Fitness in Sphingobium sp. HT1-2 around GFF2163

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,185,220	+		GFF2159	0.62	+1.3
2,185,220	+		GFF2159	0.62	-1.7
2,185,220	+		GFF2159	0.62	-2.3
2,185,220	+		GFF2159	0.62	+0.7
2,185,220	+		GFF2159	0.62	-0.7
2,185,220	+		GFF2159	0.62	-1.2
2,185,220	+		GFF2159	0.62	-0.3
2,185,220	+		GFF2159	0.62	-0.6
2,185,220	+		GFF2159	0.62	-0.9
2,185,220	+		GFF2159	0.62	+1.4
2,185,223	-		GFF2159	0.63	-0.1
2,185,225	+		GFF2159	0.63	+1.3
2,185,225	+		GFF2159	0.63	-0.7
2,185,228	-		GFF2159	0.64	-0.7
2,185,228	-		GFF2159	0.64	-0.3
2,185,228	-		GFF2159	0.64	+0.0
2,185,228	-		GFF2159	0.64	+0.2
2,185,228	-		GFF2159	0.64	-0.4
2,185,228	-		GFF2159	0.64	+1.9
2,185,228	-		GFF2159	0.64	+0.2
2,185,236	+		GFF2159	0.65	-1.3
2,185,253	-		GFF2159	0.68	-0.8
2,185,257	+		GFF2159	0.69	+0.6
2,185,271	+		GFF2159	0.72	+0.4
2,185,271	+		GFF2159	0.72	-1.2
2,185,279	-		GFF2159	0.73	-0.7
2,185,279	-		GFF2159	0.73	-1.1
2,185,279	-		GFF2159	0.73	+0.1
2,185,288	+		GFF2159	0.75	+0.3
2,185,312	-		GFF2159	0.79	-0.0
2,185,314	-		GFF2159	0.79	-0.8
2,185,339	-		GFF2159	0.84	-0.0
2,185,359	-		GFF2159	0.88	+0.6
2,185,360	+		GFF2159	0.88	+0.0
2,185,360	+		GFF2159	0.88	-0.8
2,185,360	+		GFF2159	0.88	+0.1
2,185,368	-		GFF2159	0.89	+0.7
2,185,368	-		GFF2159	0.89	+1.1
2,185,368	-		GFF2159	0.89	+0.4
2,185,368	-		GFF2159	0.89	+0.3
2,185,368	-		GFF2159	0.89	-1.2
2,185,373	-				-1.0
2,185,373	-				-0.0
2,185,416	+				-0.1
2,185,423	+				+0.4
2,185,431	-				+0.2
2,185,441	-		GFF2160	0.12	-0.7
2,185,441	-		GFF2160	0.12	-1.6
2,185,452	+		GFF2160	0.17	-0.8
2,185,467	+		GFF2160	0.25	-0.3
2,185,482	+		GFF2160	0.32	+0.5
2,185,496	+		GFF2160	0.39	-0.7
2,185,496	+		GFF2160	0.39	+0.8
2,185,496	+		GFF2160	0.39	+0.2
2,185,496	+		GFF2160	0.39	-1.6
2,185,496	+		GFF2160	0.39	-1.2
2,185,496	+		GFF2160	0.39	+1.4
2,185,497	+		GFF2160	0.40	+0.1
2,185,501	+		GFF2160	0.42	-0.7
2,185,504	-		GFF2160	0.43	-0.4
2,185,509	-		GFF2160	0.46	+0.6
2,185,514	-		GFF2160	0.48	+0.9
2,185,528	+		GFF2160	0.56	-0.6
2,185,533	+		GFF2160	0.58	-0.3
2,185,558	+		GFF2160	0.71	-1.3
2,185,562	+		GFF2160	0.73	+0.7
2,185,563	+		GFF2160	0.73	+0.9
2,185,563	+		GFF2160	0.73	+0.4
2,185,570	-		GFF2160	0.77	-0.8
2,185,571	-		GFF2160	0.77	-0.8
2,185,582	+		GFF2160	0.83	+0.2
2,185,582	+		GFF2160	0.83	-0.4
2,185,601	-				-0.1
2,185,615	-				-0.4
2,185,640	+		GFF2161	0.16	-0.1
2,185,648	-		GFF2161	0.21	-0.2
2,185,666	-		GFF2161	0.31	-0.2
2,185,667	-		GFF2161	0.32	-0.3
2,185,668	+		GFF2161	0.32	-2.9
2,185,675	+		GFF2161	0.36	+0.9
2,185,699	+		GFF2161	0.50	-1.0
2,185,699	+		GFF2161	0.50	-0.2
2,185,707	-		GFF2161	0.55	-0.3
2,185,707	-		GFF2161	0.55	+0.6
2,185,707	-		GFF2161	0.55	-1.2
2,185,756	-		GFF2161	0.83	-1.3
2,185,756	-		GFF2161	0.83	+0.0
2,185,761	+		GFF2161	0.86	-0.1
2,185,761	+		GFF2161	0.86	-0.4
2,185,767	+		GFF2161	0.89	-0.2
2,185,786	-				+0.9
2,185,789	+				-0.8
2,185,806	+				+1.3
2,185,807	-				-2.1
2,185,810	+				+0.5
2,185,812	-				-1.4
2,185,814	-				-0.5
2,185,815	-				-0.9
2,185,818	-				-0.4
2,185,839	+		GFF2162	0.16	-1.1
2,185,901	+		GFF2162	0.35	+0.2
2,185,901	+		GFF2162	0.35	-0.5
2,185,901	-		GFF2162	0.35	-1.0
2,185,901	-		GFF2162	0.35	-1.1
2,185,901	-		GFF2162	0.35	-0.1
2,185,905	-		GFF2162	0.36	+0.8
2,185,909	+		GFF2162	0.37	-0.3
2,185,909	-		GFF2162	0.37	+1.4
2,185,912	+		GFF2162	0.38	+0.4
2,185,912	+		GFF2162	0.38	-0.4
2,185,912	+		GFF2162	0.38	+0.8
2,185,912	+		GFF2162	0.38	-1.8
2,185,912	+		GFF2162	0.38	-0.6
2,185,912	+		GFF2162	0.38	-0.3
2,185,920	-		GFF2162	0.41	-0.9
2,185,920	-		GFF2162	0.41	+0.1
2,185,920	-		GFF2162	0.41	-1.7
2,185,930	-		GFF2162	0.44	+0.1
2,185,936	+		GFF2162	0.45	+1.3
2,185,942	+		GFF2162	0.47	+0.5
2,185,944	-		GFF2162	0.48	-0.1
2,185,944	-		GFF2162	0.48	-0.1
2,185,944	-		GFF2162	0.48	+1.4
2,185,944	-		GFF2162	0.48	-0.0
2,185,963	+		GFF2162	0.53	+0.3
2,185,963	+		GFF2162	0.53	-1.2
2,185,963	+		GFF2162	0.53	+0.3
2,185,963	+		GFF2162	0.53	-1.4
2,185,963	+		GFF2162	0.53	-0.6
2,185,963	+		GFF2162	0.53	-0.6
2,185,969	-		GFF2162	0.55	-2.4
2,185,971	-		GFF2162	0.56	+0.1
2,185,971	-		GFF2162	0.56	+0.6
2,185,971	-		GFF2162	0.56	+0.6
2,185,971	-		GFF2162	0.56	-0.1
2,185,979	+		GFF2162	0.58	-1.4
2,186,003	+		GFF2162	0.65	-1.1
2,186,010	-		GFF2162	0.68	+1.1
2,186,013	-		GFF2162	0.68	+0.4
2,186,024	+		GFF2162	0.72	+1.0
2,186,032	-		GFF2162	0.74	-1.1
2,186,037	-		GFF2162	0.76	-0.4
2,186,043	+		GFF2162	0.77	-1.7
2,186,048	+		GFF2162	0.79	-1.8
2,186,056	-		GFF2162	0.81	+1.1
2,186,061	-		GFF2162	0.83	-0.7
2,186,074	+		GFF2162	0.87	-0.2
2,186,079	+		GFF2162	0.88	-1.7
2,186,087	-				+0.6
2,186,091	-				+0.3
2,186,091	-				-0.2
2,186,115	+				+0.2
2,186,123	+				-0.1
2,186,123	+				+0.4
2,186,123	+				+0.9
2,186,131	-				-0.0
2,186,169	+				+1.3
2,186,188	+				-0.2
2,186,197	+				-1.1
2,186,203	+				-2.2
2,186,204	+				-2.5
2,186,205	+				-0.8
2,186,205	+				+0.8
2,186,205	-				-0.2
2,186,206	-				-3.5
2,186,206	-				-0.5
2,186,212	-				-2.0
2,186,213	-				-1.4
2,186,213	-				+0.9
2,186,225	-				-1.2
2,186,260	-		GFF2163	0.33	-1.3
2,186,265	-		GFF2163	0.36	-0.1
2,186,267	+		GFF2163	0.38	+0.1
2,186,267	+		GFF2163	0.38	-0.9
2,186,267	+		GFF2163	0.38	-0.9
2,186,275	-		GFF2163	0.44	-1.9
2,186,275	-		GFF2163	0.44	-0.7
2,186,275	-		GFF2163	0.44	-1.3
2,186,275	-		GFF2163	0.44	+0.3
2,186,292	-		GFF2163	0.57	-0.9
2,186,307	-		GFF2163	0.69	-0.7
2,186,322	-		GFF2163	0.81	-3.0
2,186,323	-		GFF2163	0.81	-0.1
2,186,328	-		GFF2163	0.85	-1.4
2,186,336	+				+0.3
2,186,336	+				-0.9
2,186,336	+				+0.3
2,186,344	-				+0.1
2,186,344	-				+0.3
2,186,344	-				+0.4
2,186,364	-		GFF2164	0.11	+0.7
2,186,383	+		GFF2164	0.19	-1.4
2,186,391	-		GFF2164	0.23	-0.0
2,186,403	+		GFF2164	0.28	-0.5
2,186,411	-		GFF2164	0.31	-1.1
2,186,413	+		GFF2164	0.32	+0.2
2,186,413	+		GFF2164	0.32	+0.4
2,186,413	+		GFF2164	0.32	-2.4
2,186,413	+		GFF2164	0.32	-0.2
2,186,413	+		GFF2164	0.32	+1.1
2,186,421	-		GFF2164	0.35	+0.1
2,186,421	-		GFF2164	0.35	-0.8
2,186,439	-		GFF2164	0.43	-0.7
2,186,459	-		GFF2164	0.52	+0.8
2,186,483	+		GFF2164	0.62	-2.0
2,186,483	+		GFF2164	0.62	+0.8
2,186,483	+		GFF2164	0.62	+0.8
2,186,483	+		GFF2164	0.62	+0.4
2,186,483	+		GFF2164	0.62	+1.4
2,186,483	+		GFF2164	0.62	+0.3
2,186,483	+		GFF2164	0.62	+0.8
2,186,491	-		GFF2164	0.66	-1.0
2,186,491	-		GFF2164	0.66	+0.6
2,186,491	-		GFF2164	0.66	-2.4
2,186,506	+		GFF2164	0.72	-1.3
2,186,506	+		GFF2164	0.72	-0.9
2,186,506	+		GFF2164	0.72	+0.5
2,186,514	-		GFF2164	0.76	-0.3
2,186,514	-		GFF2164	0.76	+0.5
2,186,514	-		GFF2164	0.76	+0.4
2,186,514	-		GFF2164	0.76	+1.2
2,186,518	-		GFF2164	0.77	+0.8
2,186,526	+		GFF2164	0.81	-1.3
2,186,529	-		GFF2164	0.82	-1.0
2,186,529	-		GFF2164	0.82	+0.6
2,186,534	-		GFF2164	0.84	-0.9
2,186,539	-		GFF2164	0.87	-0.4
2,186,545	+		GFF2164	0.89	-0.1
2,186,545	+		GFF2164	0.89	+0.7
2,186,558	+				-0.1
2,186,563	+				+1.7
2,186,563	-				+0.5
2,186,591	+				-0.0
2,186,596	+				-0.3
2,186,599	-				-2.6
2,186,604	-		GFF2165	0.10	-0.4
2,186,613	-		GFF2165	0.12	+0.9
2,186,630	+		GFF2165	0.16	-0.0
2,186,640	+		GFF2165	0.19	-2.3
2,186,640	+		GFF2165	0.19	-0.9
2,186,645	+		GFF2165	0.20	-3.1
2,186,645	+		GFF2165	0.20	+0.1
2,186,645	+		GFF2165	0.20	-1.2
2,186,648	-		GFF2165	0.21	-0.5
2,186,648	-		GFF2165	0.21	-0.7
2,186,653	-		GFF2165	0.22	+0.7
2,186,653	-		GFF2165	0.22	-2.0
2,186,660	+		GFF2165	0.23	+0.9
2,186,660	+		GFF2165	0.23	+0.7
2,186,665	+		GFF2165	0.25	-0.5
2,186,665	+		GFF2165	0.25	-1.6
2,186,668	-		GFF2165	0.25	+0.7
2,186,668	-		GFF2165	0.25	-0.5
2,186,673	-		GFF2165	0.27	+0.6
2,186,673	-		GFF2165	0.27	+0.2
2,186,691	+		GFF2165	0.31	+0.3
2,186,699	-		GFF2165	0.33	-0.6
2,186,699	-		GFF2165	0.33	-1.7
2,186,699	-		GFF2165	0.33	-0.3
2,186,707	+		GFF2165	0.35	+0.6
2,186,707	+		GFF2165	0.35	-0.4
2,186,715	-		GFF2165	0.36	+0.6
2,186,728	-		GFF2165	0.39	+0.4
2,186,728	-		GFF2165	0.39	-1.9
2,186,736	+		GFF2165	0.41	-1.1
2,186,741	+		GFF2165	0.42	-0.7
2,186,749	-		GFF2165	0.44	+1.0
2,186,758	-		GFF2165	0.46	-0.8
2,186,781	+		GFF2165	0.52	-0.1
2,186,781	+		GFF2165	0.52	+0.7
2,186,781	+		GFF2165	0.52	+0.4
2,186,781	+		GFF2165	0.52	-2.2
2,186,781	+		GFF2165	0.52	-0.7
2,186,789	-		GFF2165	0.54	+1.0
2,186,789	-		GFF2165	0.54	+0.0
2,186,789	-		GFF2165	0.54	+0.6
2,186,789	-		GFF2165	0.54	-1.4
2,186,789	-		GFF2165	0.54	-2.3
2,186,803	-		GFF2165	0.57	-0.4
2,186,803	-		GFF2165	0.57	-1.0
2,186,803	-		GFF2165	0.57	+1.4
2,186,807	+		GFF2165	0.58	+0.8
2,186,813	-		GFF2165	0.59	-0.4
2,186,813	-		GFF2165	0.59	+0.9
2,186,820	+		GFF2165	0.61	-0.7
2,186,820	+		GFF2165	0.61	+0.2
2,186,839	-		GFF2165	0.65	-0.1
2,186,840	+		GFF2165	0.66	-0.2
2,186,848	+		GFF2165	0.68	+0.3
2,186,848	+		GFF2165	0.68	-3.1
2,186,848	+		GFF2165	0.68	-0.9
2,186,848	+		GFF2165	0.68	-1.2
2,186,848	-		GFF2165	0.68	+0.2
2,186,850	+		GFF2165	0.68	-0.6
2,186,856	+		GFF2165	0.69	+0.3
2,186,856	-		GFF2165	0.69	-0.1
2,186,883	+		GFF2165	0.76	+0.3
2,186,883	+		GFF2165	0.76	-0.2
2,186,891	-		GFF2165	0.78	+0.7
2,186,891	-		GFF2165	0.78	-0.9
2,186,894	+		GFF2165	0.78	-1.4
2,186,894	+		GFF2165	0.78	-0.5
2,186,894	+		GFF2165	0.78	+0.2
2,186,902	-		GFF2165	0.80	+1.3
2,186,902	-		GFF2165	0.80	-1.3
2,186,902	-		GFF2165	0.80	-0.9
2,186,914	+		GFF2165	0.83	+0.1
2,186,922	-		GFF2165	0.85	+0.7
2,186,932	-		GFF2165	0.87	-0.6
2,186,961	+				+0.6
2,186,961	+				+1.1
2,186,971	+				+1.0
2,186,974	-				-1.0
2,187,001	-				-1.9
2,187,078	-				+0.0
2,187,092	+				+0.2
2,187,100	-				-0.1
2,187,100	-				-0.5
2,187,103	+				-0.2
2,187,126	+		GFF2166	0.14	-0.9
2,187,134	-		GFF2166	0.17	-1.6
2,187,164	-		GFF2166	0.28	-2.9
2,187,169	+		GFF2166	0.30	+0.2
2,187,174	+		GFF2166	0.32	-0.6
2,187,175	+		GFF2166	0.33	+0.6
2,187,182	-		GFF2166	0.35	+0.4
2,187,203	+		GFF2166	0.43	+0.6
2,187,244	-		GFF2166	0.59	-2.6
2,187,271	-		GFF2166	0.69	-0.0
2,187,312	+		GFF2166	0.84	-0.9
2,187,320	-		GFF2166	0.88	+1.9
2,187,320	-		GFF2166	0.88	-0.1
2,187,320	-		GFF2166	0.88	+0.3
2,187,331	+				-1.2
2,187,339	-				-1.0
2,187,339	-				-0.7
2,187,339	-				-1.0