Strain Fitness in Sphingobium sp. HT1-2 around GFF2158

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,183,605	+		GFF2154	0.70	-0.0
2,183,613	-		GFF2154	0.75	-0.9
2,183,632	-		GFF2154	0.86	+1.0
2,183,652	+				+0.1
2,183,652	+				+0.8
2,183,652	+				-0.0
2,183,656	+				-0.9
2,183,660	-				+0.7
2,183,660	-				+0.6
2,183,692	+		GFF2155	0.13	+0.6
2,183,706	-		GFF2155	0.17	-0.0
2,183,720	-		GFF2155	0.22	-1.0
2,183,721	-		GFF2155	0.22	-0.0
2,183,732	+		GFF2155	0.26	-1.9
2,183,738	+		GFF2155	0.28	-0.5
2,183,740	-		GFF2155	0.28	-0.1
2,183,740	-		GFF2155	0.28	-1.4
2,183,746	-		GFF2155	0.30	-1.6
2,183,746	-		GFF2155	0.30	+1.8
2,183,746	-		GFF2155	0.30	-0.5
2,183,763	+		GFF2155	0.36	-0.0
2,183,763	+		GFF2155	0.36	+1.3
2,183,771	-		GFF2155	0.39	+0.5
2,183,771	-		GFF2155	0.39	+0.1
2,183,771	-		GFF2155	0.39	-0.4
2,183,771	-		GFF2155	0.39	-0.6
2,183,813	-		GFF2155	0.52	+0.1
2,183,833	+		GFF2155	0.59	-0.6
2,183,855	+		GFF2155	0.66	+0.8
2,183,855	+		GFF2155	0.66	+0.2
2,183,855	+		GFF2155	0.66	-1.7
2,183,855	+		GFF2155	0.66	-0.6
2,183,855	+		GFF2155	0.66	-0.4
2,183,855	+		GFF2155	0.66	+0.1
2,183,855	+		GFF2155	0.66	-0.4
2,183,855	+		GFF2155	0.66	-1.3
2,183,855	+		GFF2155	0.66	-1.5
2,183,855	+		GFF2155	0.66	+1.0
2,183,858	-		GFF2155	0.67	+0.4
2,183,863	-		GFF2155	0.69	-0.1
2,183,863	-		GFF2155	0.69	+0.1
2,183,863	-		GFF2155	0.69	-1.1
2,183,863	-		GFF2155	0.69	-0.9
2,183,863	-		GFF2155	0.69	+0.4
2,183,863	-		GFF2155	0.69	-0.1
2,183,863	-		GFF2155	0.69	-0.7
2,183,863	-		GFF2155	0.69	+0.3
2,183,863	-		GFF2155	0.69	-0.1
2,183,863	-		GFF2155	0.69	+0.6
2,183,863	-		GFF2155	0.69	-1.0
2,183,863	-		GFF2155	0.69	+1.0
2,183,863	-		GFF2155	0.69	+0.7
2,183,874	+		GFF2155	0.72	-1.6
2,183,890	-		GFF2155	0.77	-0.5
2,183,890	-		GFF2155	0.77	+1.0
2,183,906	+		GFF2155	0.83	-2.4
2,183,910	+		GFF2155	0.84	-0.1
2,183,910	+		GFF2155	0.84	-0.5
2,183,910	+		GFF2155	0.84	+0.1
2,183,914	-		GFF2155	0.85	-0.3
2,183,916	+		GFF2155	0.86	+1.1
2,183,916	+		GFF2155	0.86	-3.1
2,183,916	+		GFF2155	0.86	+0.7
2,183,916	+		GFF2155	0.86	+1.4
2,183,916	+		GFF2155	0.86	-1.2
2,183,916	+		GFF2155	0.86	+0.4
2,183,916	+		GFF2155	0.86	+0.5
2,183,916	+		GFF2155	0.86	-2.5
2,183,918	-		GFF2155	0.87	-2.4
2,183,923	-		GFF2155	0.88	-1.8
2,183,923	-		GFF2155	0.88	-0.6
2,183,924	-		GFF2155	0.89	+1.4
2,183,924	-		GFF2155	0.89	-0.6
2,183,924	-		GFF2155	0.89	-0.1
2,183,924	-		GFF2155	0.89	-1.1
2,183,930	-				+0.6
2,183,931	-				-2.6
2,183,948	+				-0.4
2,183,968	+				+0.2
2,183,971	+				-3.0
2,183,976	+				-0.4
2,183,982	+				-0.7
2,183,999	-		GFF2156	0.11	-0.1
2,184,091	+		GFF2156	0.34	-0.2
2,184,091	+		GFF2156	0.34	+1.1
2,184,096	+		GFF2156	0.35	+0.1
2,184,103	-		GFF2156	0.37	+0.5
2,184,109	-		GFF2156	0.39	+0.5
2,184,127	-		GFF2156	0.43	+0.9
2,184,127	-		GFF2156	0.43	+0.1
2,184,135	-		GFF2156	0.45	+0.1
2,184,137	+		GFF2156	0.46	-3.2
2,184,163	+		GFF2156	0.52	-0.2
2,184,163	+		GFF2156	0.52	+0.4
2,184,163	+		GFF2156	0.52	-0.0
2,184,163	+		GFF2156	0.52	-0.4
2,184,163	+		GFF2156	0.52	-0.6
2,184,167	+		GFF2156	0.53	-0.6
2,184,171	-		GFF2156	0.54	+0.3
2,184,171	-		GFF2156	0.54	-0.7
2,184,171	-		GFF2156	0.54	+0.5
2,184,171	-		GFF2156	0.54	-1.2
2,184,171	-		GFF2156	0.54	-1.9
2,184,194	+		GFF2156	0.60	+1.0
2,184,219	+		GFF2156	0.66	-1.7
2,184,227	-		GFF2156	0.68	-0.7
2,184,265	+		GFF2156	0.78	+0.3
2,184,267	+		GFF2156	0.78	-0.4
2,184,274	+		GFF2156	0.80	-1.2
2,184,274	+		GFF2156	0.80	-0.9
2,184,282	-		GFF2156	0.82	-1.9
2,184,294	-		GFF2156	0.85	-1.2
2,184,314	+				-0.8
2,184,314	+				-1.1
2,184,333	+				+1.1
2,184,341	+				+0.7
2,184,341	+				+0.0
2,184,341	+				+1.6
2,184,341	+				-1.4
2,184,343	-				+0.1
2,184,349	-				+0.5
2,184,349	-				-1.7
2,184,363	-				-1.2
2,184,371	+		GFF2157	0.11	+0.1
2,184,376	+		GFF2157	0.13	-0.7
2,184,376	+		GFF2157	0.13	-1.9
2,184,376	+		GFF2157	0.13	+0.1
2,184,379	+		GFF2157	0.14	+0.0
2,184,384	+		GFF2157	0.16	+0.3
2,184,384	-		GFF2157	0.16	-1.2
2,184,395	+		GFF2157	0.21	-2.1
2,184,398	-		GFF2157	0.22	-0.7
2,184,403	-		GFF2157	0.24	-0.9
2,184,421	-		GFF2157	0.31	-0.4
2,184,422	-		GFF2157	0.31	-1.3
2,184,424	+		GFF2157	0.32	-0.9
2,184,457	+		GFF2157	0.45	-0.1
2,184,470	-		GFF2157	0.50	-1.4
2,184,495	+		GFF2157	0.60	-2.2
2,184,495	+		GFF2157	0.60	-1.1
2,184,508	+		GFF2157	0.65	+0.4
2,184,512	-		GFF2157	0.67	-0.8
2,184,522	+		GFF2157	0.71	+0.3
2,184,522	+		GFF2157	0.71	+0.7
2,184,523	+		GFF2157	0.71	-0.4
2,184,530	-		GFF2157	0.74	-0.9
2,184,536	+		GFF2157	0.77	-0.9
2,184,542	+		GFF2157	0.79	-1.6
2,184,554	-		GFF2157	0.84	-0.2
2,184,574	+				-0.0
2,184,574	+				-0.1
2,184,574	+				-0.5
2,184,582	-				-0.4
2,184,583	-				-1.9
2,184,611	-				+0.3
2,184,612	-				+0.1
2,184,612	-				+0.9
2,184,612	-				+0.1
2,184,612	-				-1.8
2,184,624	+		GFF2158	0.11	+0.1
2,184,655	-		GFF2158	0.22	+0.1
2,184,666	+		GFF2158	0.25	-0.2
2,184,673	+		GFF2158	0.28	-0.2
2,184,673	+		GFF2158	0.28	+0.9
2,184,673	+		GFF2158	0.28	+0.4
2,184,673	+		GFF2158	0.28	-0.8
2,184,673	+		GFF2158	0.28	-0.4
2,184,673	+		GFF2158	0.28	+0.5
2,184,673	+		GFF2158	0.28	-0.3
2,184,673	+		GFF2158	0.28	-0.5
2,184,673	+		GFF2158	0.28	-0.0
2,184,681	-		GFF2158	0.30	+0.2
2,184,681	-		GFF2158	0.30	+1.2
2,184,681	-		GFF2158	0.30	+1.1
2,184,681	-		GFF2158	0.30	-1.8
2,184,681	-		GFF2158	0.30	-2.1
2,184,681	-		GFF2158	0.30	-0.3
2,184,681	-		GFF2158	0.30	-1.9
2,184,681	-		GFF2158	0.30	+0.8
2,184,681	-		GFF2158	0.30	+1.1
2,184,681	-		GFF2158	0.30	-1.9
2,184,681	-		GFF2158	0.30	-0.6
2,184,692	+		GFF2158	0.34	-1.2
2,184,694	-		GFF2158	0.35	+0.7
2,184,706	+		GFF2158	0.39	-0.3
2,184,731	-		GFF2158	0.47	+0.4
2,184,737	+		GFF2158	0.49	-0.4
2,184,737	+		GFF2158	0.49	-1.2
2,184,745	-		GFF2158	0.52	-0.4
2,184,745	-		GFF2158	0.52	-0.5
2,184,745	-		GFF2158	0.52	+0.2
2,184,747	+		GFF2158	0.53	+1.1
2,184,783	+		GFF2158	0.65	-0.9
2,184,796	-		GFF2158	0.69	-1.2
2,184,830	+		GFF2158	0.80	+0.3
2,184,830	+		GFF2158	0.80	-0.6
2,184,838	-		GFF2158	0.83	+0.0
2,184,843	-		GFF2158	0.85	+0.8
2,184,858	+				-1.1
2,184,866	-				+0.6
2,184,878	+				+0.4
2,184,878	+				-0.3
2,184,883	+				-0.1
2,184,883	+				-0.3
2,184,884	-				+0.6
2,184,885	-				+0.4
2,184,891	-				-1.7
2,184,891	-				-1.8
2,184,904	-				-0.4
2,184,936	-		GFF2159	0.10	-0.3
2,184,946	-		GFF2159	0.12	-0.4
2,184,953	+		GFF2159	0.13	-1.3
2,184,955	+		GFF2159	0.14	-0.6
2,184,963	-		GFF2159	0.15	+0.6
2,184,965	+		GFF2159	0.16	-0.9
2,184,967	+		GFF2159	0.16	+0.7
2,184,973	-		GFF2159	0.17	-0.1
2,184,973	-		GFF2159	0.17	+0.6
2,184,973	-		GFF2159	0.17	+0.4
2,184,977	+		GFF2159	0.18	-1.3
2,184,978	-		GFF2159	0.18	-0.7
2,184,983	-		GFF2159	0.19	-2.2
2,185,004	+		GFF2159	0.23	+0.9
2,185,011	+		GFF2159	0.24	+0.4
2,185,011	-		GFF2159	0.24	+0.7
2,185,032	+		GFF2159	0.28	+0.7
2,185,037	+		GFF2159	0.29	-0.8
2,185,037	+		GFF2159	0.29	+0.3
2,185,037	+		GFF2159	0.29	+0.5
2,185,038	+		GFF2159	0.29	+0.1
2,185,045	-		GFF2159	0.30	-0.3
2,185,045	-		GFF2159	0.30	-0.2
2,185,045	-		GFF2159	0.30	-0.1
2,185,045	-		GFF2159	0.30	-0.3
2,185,064	-		GFF2159	0.34	-0.2
2,185,095	-		GFF2159	0.39	-0.6
2,185,107	-		GFF2159	0.42	-1.6
2,185,112	+		GFF2159	0.42	-1.4
2,185,120	-		GFF2159	0.44	-1.4
2,185,125	-		GFF2159	0.45	-0.6
2,185,140	+		GFF2159	0.48	+1.5
2,185,140	+		GFF2159	0.48	-0.5
2,185,140	+		GFF2159	0.48	-0.4
2,185,140	+		GFF2159	0.48	-1.8
2,185,140	+		GFF2159	0.48	-1.0
2,185,148	-		GFF2159	0.49	+1.3
2,185,148	-		GFF2159	0.49	+0.6
2,185,148	-		GFF2159	0.49	-1.1
2,185,148	-		GFF2159	0.49	+0.1
2,185,148	-		GFF2159	0.49	-0.9
2,185,148	-		GFF2159	0.49	-0.5
2,185,148	-		GFF2159	0.49	+0.1
2,185,148	-		GFF2159	0.49	-0.9
2,185,148	-		GFF2159	0.49	-1.3
2,185,148	-		GFF2159	0.49	+0.6
2,185,153	-		GFF2159	0.50	-0.3
2,185,172	+		GFF2159	0.53	+0.8
2,185,180	-		GFF2159	0.55	+0.7
2,185,180	-		GFF2159	0.55	-1.6
2,185,180	-		GFF2159	0.55	+0.3
2,185,188	+		GFF2159	0.56	+1.0
2,185,193	+		GFF2159	0.57	-1.7
2,185,193	+		GFF2159	0.57	+0.8
2,185,195	+		GFF2159	0.58	-1.2
2,185,195	+		GFF2159	0.58	-0.1
2,185,201	-		GFF2159	0.59	+0.8
2,185,213	+		GFF2159	0.61	-0.3
2,185,213	+		GFF2159	0.61	-1.3
2,185,214	+		GFF2159	0.61	-1.3
2,185,220	+		GFF2159	0.62	+1.3
2,185,220	+		GFF2159	0.62	-1.7
2,185,220	+		GFF2159	0.62	-2.3
2,185,220	+		GFF2159	0.62	+0.7
2,185,220	+		GFF2159	0.62	-0.7
2,185,220	+		GFF2159	0.62	-1.2
2,185,220	+		GFF2159	0.62	-0.3
2,185,220	+		GFF2159	0.62	-0.6
2,185,220	+		GFF2159	0.62	-0.9
2,185,220	+		GFF2159	0.62	+1.4
2,185,223	-		GFF2159	0.63	-0.1
2,185,225	+		GFF2159	0.63	+1.3
2,185,225	+		GFF2159	0.63	-0.7
2,185,228	-		GFF2159	0.64	-0.7
2,185,228	-		GFF2159	0.64	-0.3
2,185,228	-		GFF2159	0.64	+0.0
2,185,228	-		GFF2159	0.64	+0.2
2,185,228	-		GFF2159	0.64	-0.4
2,185,228	-		GFF2159	0.64	+1.9
2,185,228	-		GFF2159	0.64	+0.2
2,185,236	+		GFF2159	0.65	-1.3
2,185,253	-		GFF2159	0.68	-0.8
2,185,257	+		GFF2159	0.69	+0.6
2,185,271	+		GFF2159	0.72	+0.4
2,185,271	+		GFF2159	0.72	-1.2
2,185,279	-		GFF2159	0.73	-0.7
2,185,279	-		GFF2159	0.73	-1.1
2,185,279	-		GFF2159	0.73	+0.1
2,185,288	+		GFF2159	0.75	+0.3
2,185,312	-		GFF2159	0.79	-0.0
2,185,314	-		GFF2159	0.79	-0.8
2,185,339	-		GFF2159	0.84	-0.0
2,185,359	-		GFF2159	0.88	+0.6
2,185,360	+		GFF2159	0.88	+0.0
2,185,360	+		GFF2159	0.88	-0.8
2,185,360	+		GFF2159	0.88	+0.1
2,185,368	-		GFF2159	0.89	+0.7
2,185,368	-		GFF2159	0.89	+1.1
2,185,368	-		GFF2159	0.89	+0.4
2,185,368	-		GFF2159	0.89	+0.3
2,185,368	-		GFF2159	0.89	-1.2
2,185,373	-				-1.0
2,185,373	-				-0.0
2,185,416	+				-0.1
2,185,423	+				+0.4
2,185,431	-				+0.2
2,185,441	-		GFF2160	0.12	-0.7
2,185,441	-		GFF2160	0.12	-1.6
2,185,452	+		GFF2160	0.17	-0.8
2,185,467	+		GFF2160	0.25	-0.3
2,185,482	+		GFF2160	0.32	+0.5
2,185,496	+		GFF2160	0.39	-0.7
2,185,496	+		GFF2160	0.39	+0.8
2,185,496	+		GFF2160	0.39	+0.2
2,185,496	+		GFF2160	0.39	-1.6
2,185,496	+		GFF2160	0.39	-1.2
2,185,496	+		GFF2160	0.39	+1.4
2,185,497	+		GFF2160	0.40	+0.1
2,185,501	+		GFF2160	0.42	-0.7
2,185,504	-		GFF2160	0.43	-0.4
2,185,509	-		GFF2160	0.46	+0.6
2,185,514	-		GFF2160	0.48	+0.9
2,185,528	+		GFF2160	0.56	-0.6
2,185,533	+		GFF2160	0.58	-0.3
2,185,558	+		GFF2160	0.71	-1.3
2,185,562	+		GFF2160	0.73	+0.7
2,185,563	+		GFF2160	0.73	+0.9
2,185,563	+		GFF2160	0.73	+0.4
2,185,570	-		GFF2160	0.77	-0.8
2,185,571	-		GFF2160	0.77	-0.8
2,185,582	+		GFF2160	0.83	+0.2
2,185,582	+		GFF2160	0.83	-0.4
2,185,601	-				-0.1
2,185,615	-				-0.4
2,185,640	+		GFF2161	0.16	-0.1
2,185,648	-		GFF2161	0.21	-0.2
2,185,666	-		GFF2161	0.31	-0.2
2,185,667	-		GFF2161	0.32	-0.3
2,185,668	+		GFF2161	0.32	-2.9
2,185,675	+		GFF2161	0.36	+0.9
2,185,699	+		GFF2161	0.50	-1.0
2,185,699	+		GFF2161	0.50	-0.2
2,185,707	-		GFF2161	0.55	-0.3
2,185,707	-		GFF2161	0.55	+0.6
2,185,707	-		GFF2161	0.55	-1.2
2,185,756	-		GFF2161	0.83	-1.3
2,185,756	-		GFF2161	0.83	+0.0
2,185,761	+		GFF2161	0.86	-0.1
2,185,761	+		GFF2161	0.86	-0.4
2,185,767	+		GFF2161	0.89	-0.2
2,185,786	-				+0.9
2,185,789	+				-0.8
2,185,806	+				+1.3
2,185,807	-				-2.1
2,185,810	+				+0.5
2,185,812	-				-1.4
2,185,814	-				-0.5
2,185,815	-				-0.9
2,185,818	-				-0.4
2,185,839	+		GFF2162	0.16	-1.1