Strain Fitness in Sphingobium sp. HT1-2 around GFF2131

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,165,900	+		GFF2130	0.22	+0.7
2,165,919	+		GFF2130	0.23	-1.4
2,165,919	+		GFF2130	0.23	-0.7
2,165,919	+		GFF2130	0.23	-0.7
2,165,919	+		GFF2130	0.23	-1.1
2,165,919	+		GFF2130	0.23	-0.5
2,165,919	+		GFF2130	0.23	+0.6
2,165,919	+		GFF2130	0.23	+1.1
2,165,919	+		GFF2130	0.23	-1.2
2,165,919	+		GFF2130	0.23	+0.1
2,165,920	-		GFF2130	0.23	-0.0
2,165,935	+		GFF2130	0.25	-2.0
2,165,935	+		GFF2130	0.25	-0.0
2,165,935	+		GFF2130	0.25	+1.8
2,165,940	+		GFF2130	0.25	-0.7
2,165,943	-		GFF2130	0.25	+1.1
2,165,945	+		GFF2130	0.25	+1.3
2,165,945	+		GFF2130	0.25	+0.3
2,165,945	+		GFF2130	0.25	-0.2
2,165,945	+		GFF2130	0.25	-1.0
2,165,945	+		GFF2130	0.25	-1.1
2,165,953	-		GFF2130	0.26	+0.8
2,165,955	+		GFF2130	0.26	-1.2
2,165,979	+		GFF2130	0.28	-0.6
2,165,979	+		GFF2130	0.28	+0.4
2,165,986	-		GFF2130	0.29	-2.6
2,166,004	+		GFF2130	0.30	-0.3
2,166,011	-		GFF2130	0.31	-0.8
2,166,012	-		GFF2130	0.31	-1.6
2,166,028	+		GFF2130	0.32	-0.3
2,166,028	+		GFF2130	0.32	-0.0
2,166,035	+		GFF2130	0.33	+1.3
2,166,036	-		GFF2130	0.33	-1.3
2,166,056	+		GFF2130	0.35	-0.3
2,166,059	-		GFF2130	0.35	+0.7
2,166,075	+		GFF2130	0.36	-0.3
2,166,075	+		GFF2130	0.36	-0.5
2,166,083	-		GFF2130	0.37	-0.8
2,166,083	-		GFF2130	0.37	-0.2
2,166,089	+		GFF2130	0.37	+0.0
2,166,097	+		GFF2130	0.38	-0.5
2,166,097	-		GFF2130	0.38	+0.3
2,166,105	-		GFF2130	0.39	-1.6
2,166,150	+		GFF2130	0.42	-0.0
2,166,164	+		GFF2130	0.43	-1.0
2,166,193	+		GFF2130	0.46	+1.2
2,166,203	+		GFF2130	0.47	-1.4
2,166,208	+		GFF2130	0.47	-1.3
2,166,211	-		GFF2130	0.47	+0.3
2,166,212	-		GFF2130	0.47	+1.0
2,166,214	-		GFF2130	0.48	+1.2
2,166,214	-		GFF2130	0.48	+0.9
2,166,219	-		GFF2130	0.48	-0.4
2,166,226	+		GFF2130	0.49	+0.1
2,166,229	-		GFF2130	0.49	+0.9
2,166,234	-		GFF2130	0.49	-0.9
2,166,262	+		GFF2130	0.52	+0.4
2,166,263	-		GFF2130	0.52	+1.9
2,166,265	-		GFF2130	0.52	+0.5
2,166,297	+		GFF2130	0.54	+0.1
2,166,297	+		GFF2130	0.54	-0.6
2,166,318	-		GFF2130	0.56	+0.3
2,166,329	-		GFF2130	0.57	-0.7
2,166,338	+		GFF2130	0.58	-0.8
2,166,347	+		GFF2130	0.59	+1.7
2,166,347	+		GFF2130	0.59	+0.8
2,166,347	+		GFF2130	0.59	-1.1
2,166,347	+		GFF2130	0.59	-1.1
2,166,347	+		GFF2130	0.59	+0.5
2,166,355	-		GFF2130	0.59	-0.9
2,166,355	-		GFF2130	0.59	+0.1
2,166,355	-		GFF2130	0.59	+0.1
2,166,355	-		GFF2130	0.59	+0.5
2,166,355	-		GFF2130	0.59	-0.3
2,166,355	-		GFF2130	0.59	-0.4
2,166,355	-		GFF2130	0.59	+0.5
2,166,420	-		GFF2130	0.65	+0.2
2,166,484	-		GFF2130	0.70	-1.2
2,166,518	+		GFF2130	0.73	+0.8
2,166,544	+		GFF2130	0.75	-1.3
2,166,562	+		GFF2130	0.76	+0.2
2,166,588	+		GFF2130	0.78	+1.3
2,166,588	+		GFF2130	0.78	+0.1
2,166,588	+		GFF2130	0.78	-0.9
2,166,588	+		GFF2130	0.78	+2.3
2,166,588	+		GFF2130	0.78	+0.1
2,166,588	+		GFF2130	0.78	+0.5
2,166,588	+		GFF2130	0.78	+0.9
2,166,601	-		GFF2130	0.80	-0.4
2,166,606	+		GFF2130	0.80	-0.5
2,166,606	+		GFF2130	0.80	-1.3
2,166,606	+		GFF2130	0.80	+1.3
2,166,606	+		GFF2130	0.80	+1.9
2,166,606	+		GFF2130	0.80	-1.4
2,166,611	+		GFF2130	0.80	-1.2
2,166,641	-		GFF2130	0.83	+0.5
2,166,649	-		GFF2130	0.83	-1.7
2,166,652	+		GFF2130	0.84	-1.0
2,166,739	+				-1.2
2,166,739	+				-2.0
2,166,739	+				-0.3
2,166,747	-				+1.3
2,166,754	+				-0.9
2,166,762	-				+0.3
2,166,762	-				+0.4
2,166,883	+				+0.2
2,166,906	+				-1.1
2,166,933	-				-0.7
2,166,947	-				-0.4
2,167,029	+		GFF2131	0.13	-1.4
2,167,037	-		GFF2131	0.14	+0.2
2,167,037	-		GFF2131	0.14	-0.2
2,167,037	-		GFF2131	0.14	-1.0
2,167,050	+		GFF2131	0.15	-1.2
2,167,054	+		GFF2131	0.15	-0.5
2,167,084	+		GFF2131	0.18	-0.5
2,167,117	+		GFF2131	0.21	-1.3
2,167,118	-		GFF2131	0.21	+0.2
2,167,126	-		GFF2131	0.21	-0.1
2,167,177	+		GFF2131	0.26	+1.3
2,167,188	+		GFF2131	0.27	-3.2
2,167,188	+		GFF2131	0.27	+0.3
2,167,275	-		GFF2131	0.34	-1.2
2,167,277	-		GFF2131	0.34	-1.6
2,167,300	+		GFF2131	0.36	-2.6
2,167,310	+		GFF2131	0.37	-0.7
2,167,332	-		GFF2131	0.38	-1.3
2,167,374	-		GFF2131	0.42	-1.4
2,167,385	+		GFF2131	0.43	-1.1
2,167,392	+		GFF2131	0.43	-0.5
2,167,399	-		GFF2131	0.44	-1.1
2,167,400	-		GFF2131	0.44	-1.4
2,167,400	-		GFF2131	0.44	-2.8
2,167,400	-		GFF2131	0.44	-0.6
2,167,400	-		GFF2131	0.44	-0.2
2,167,400	-		GFF2131	0.44	-1.5
2,167,400	-		GFF2131	0.44	-1.0
2,167,461	-		GFF2131	0.49	-1.4
2,167,461	-		GFF2131	0.49	-0.0
2,167,472	-		GFF2131	0.50	-0.7
2,167,508	-		GFF2131	0.53	-0.5
2,167,513	-		GFF2131	0.54	-3.0
2,167,561	+		GFF2131	0.58	-0.2
2,167,569	-		GFF2131	0.58	-0.8
2,167,591	-		GFF2131	0.60	-0.0
2,167,604	-		GFF2131	0.61	-2.6
2,167,604	-		GFF2131	0.61	-1.1
2,167,639	+		GFF2131	0.64	-1.3
2,167,665	+		GFF2131	0.66	+0.0
2,167,680	+		GFF2131	0.67	+0.8
2,167,750	+		GFF2131	0.73	-1.8
2,167,750	+		GFF2131	0.73	-0.2
2,167,750	+		GFF2131	0.73	+1.5
2,167,750	+		GFF2131	0.73	-1.7
2,167,758	-		GFF2131	0.74	+0.1
2,167,778	-		GFF2131	0.76	-0.1
2,167,793	+		GFF2131	0.77	-0.9
2,167,793	+		GFF2131	0.77	-0.8
2,167,801	-		GFF2131	0.77	+0.9
2,167,813	+		GFF2131	0.78	+0.5
2,167,816	-		GFF2131	0.79	-2.1
2,167,816	-		GFF2131	0.79	-1.9
2,167,825	+		GFF2131	0.79	-1.4
2,167,836	+		GFF2131	0.80	-3.0
2,167,836	+		GFF2131	0.80	-0.7
2,167,869	+		GFF2131	0.83	-0.5
2,167,877	-		GFF2131	0.84	+0.2
2,167,877	-		GFF2131	0.84	-2.7
2,167,877	-		GFF2131	0.84	-1.4
2,167,895	+		GFF2131	0.85	-1.4
2,167,895	+		GFF2131	0.85	-0.3
2,167,903	-		GFF2131	0.86	-0.3
2,167,911	-		GFF2131	0.87	-0.9
2,167,924	+		GFF2131	0.88	-3.2
2,167,924	+		GFF2131	0.88	-1.0
2,167,932	-		GFF2131	0.88	-0.3
2,167,935	+		GFF2131	0.89	-0.3
2,167,960	+				+0.0
2,167,970	+				-3.6
2,167,970	+				-3.1
2,167,992	-				+0.5
2,167,994	+				-1.5
2,167,994	+				-1.8
2,168,002	-				-2.1
2,168,002	-				-1.2
2,168,002	-				-2.5
2,168,017	-				-1.4
2,168,060	-				-0.4
2,168,121	+				-0.8
2,168,163	+				+0.9
2,168,163	+				-2.3
2,168,232	+				+0.3
2,168,261	-		GFF2132	0.12	-2.4
2,168,261	-		GFF2132	0.12	-0.3
2,168,300	+		GFF2132	0.16	-1.4
2,168,316	+		GFF2132	0.17	-1.4
2,168,316	+		GFF2132	0.17	+0.5
2,168,316	+		GFF2132	0.17	-0.3
2,168,326	+		GFF2132	0.18	-1.5
2,168,333	-		GFF2132	0.19	+0.1
2,168,344	-		GFF2132	0.20	-0.9
2,168,344	-		GFF2132	0.20	-2.5
2,168,344	-		GFF2132	0.20	-1.6
2,168,363	+		GFF2132	0.22	-1.8
2,168,363	+		GFF2132	0.22	-1.9
2,168,363	+		GFF2132	0.22	-0.0
2,168,363	+		GFF2132	0.22	+0.0
2,168,363	+		GFF2132	0.22	-0.8
2,168,363	+		GFF2132	0.22	-2.2
2,168,363	+		GFF2132	0.22	-2.8
2,168,363	+		GFF2132	0.22	-0.9
2,168,363	+		GFF2132	0.22	-2.7
2,168,371	-		GFF2132	0.23	-2.9
2,168,371	-		GFF2132	0.23	-1.5
2,168,371	-		GFF2132	0.23	-0.8
2,168,371	-		GFF2132	0.23	-1.2
2,168,371	-		GFF2132	0.23	-1.0
2,168,371	-		GFF2132	0.23	-0.7
2,168,371	-		GFF2132	0.23	-1.9
2,168,371	-		GFF2132	0.23	-1.2
2,168,371	-		GFF2132	0.23	-1.0
2,168,371	-		GFF2132	0.23	-2.4
2,168,371	-		GFF2132	0.23	-1.6
2,168,371	-		GFF2132	0.23	-3.7
2,168,371	-		GFF2132	0.23	-0.9
2,168,371	-		GFF2132	0.23	-2.8
2,168,371	-		GFF2132	0.23	+0.0
2,168,371	-		GFF2132	0.23	-0.4
2,168,371	-		GFF2132	0.23	+0.4
2,168,371	-		GFF2132	0.23	-2.2
2,168,371	-		GFF2132	0.23	-0.7
2,168,371	-		GFF2132	0.23	-1.3
2,168,408	+		GFF2132	0.26	-3.3
2,168,408	+		GFF2132	0.26	-0.8
2,168,429	+		GFF2132	0.28	-3.1
2,168,440	-		GFF2132	0.29	-0.5
2,168,457	+		GFF2132	0.31	-0.1
2,168,465	-		GFF2132	0.32	-1.2
2,168,479	-		GFF2132	0.33	+0.9
2,168,479	-		GFF2132	0.33	-2.1
2,168,489	+		GFF2132	0.34	-2.7
2,168,489	+		GFF2132	0.34	-2.5
2,168,527	+		GFF2132	0.38	-0.3
2,168,544	+		GFF2132	0.40	-2.2
2,168,552	-		GFF2132	0.40	-0.6
2,168,579	+		GFF2132	0.43	-1.4
2,168,583	+		GFF2132	0.44	-2.4
2,168,591	-		GFF2132	0.44	-1.6
2,168,593	+		GFF2132	0.45	+0.3
2,168,606	+		GFF2132	0.46	-1.6
2,168,614	-		GFF2132	0.47	-1.3
2,168,614	-		GFF2132	0.47	-1.8
2,168,616	+		GFF2132	0.47	+0.1
2,168,813	+		GFF2132	0.66	-1.2
2,168,831	+		GFF2132	0.68	-0.2
2,168,857	+		GFF2132	0.71	-1.2
2,168,922	+		GFF2132	0.77	-2.4
2,169,008	+		GFF2132	0.86	-2.6
2,169,008	+		GFF2132	0.86	-1.8
2,169,023	+		GFF2132	0.87	-0.0
2,169,023	+		GFF2132	0.87	-0.3
2,169,023	+		GFF2132	0.87	-2.1
2,169,023	+		GFF2132	0.87	+0.0
2,169,031	-		GFF2132	0.88	-3.5
2,169,031	-		GFF2132	0.88	-1.0
2,169,069	+				+0.0