Strain Fitness in Sphingobium sp. HT1-2 around GFF2130

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,164,811	-				+0.0
2,164,816	-				-0.4
2,164,818	-				+0.7
2,164,822	-				+1.3
2,164,876	-				-0.9
2,164,878	-				-0.4
2,164,891	-				+1.1
2,164,925	-				+0.0
2,164,935	-				-2.1
2,164,940	+				-0.1
2,164,947	+				-2.0
2,164,948	-				+1.1
2,164,948	-				-0.4
2,164,949	+				+1.0
2,164,949	+				-1.3
2,164,955	-				+0.5
2,164,957	-				+0.2
2,164,964	+				-0.1
2,164,975	+				-0.6
2,165,003	-				-0.8
2,165,003	-				-0.5
2,165,013	-				-0.2
2,165,019	+				+0.7
2,165,026	+				-1.1
2,165,026	+				+0.2
2,165,026	+				+0.9
2,165,081	+				+1.5
2,165,082	+				-1.1
2,165,088	+				+0.8
2,165,088	+				-2.3
2,165,088	+				-0.3
2,165,106	-				-0.0
2,165,117	-		GFF2129	0.11	+0.2
2,165,121	-		GFF2129	0.12	-0.3
2,165,167	+		GFF2129	0.21	-0.3
2,165,181	+		GFF2129	0.24	+0.1
2,165,203	+		GFF2129	0.29	-0.1
2,165,203	+		GFF2129	0.29	+0.7
2,165,203	+		GFF2129	0.29	-1.1
2,165,203	+		GFF2129	0.29	+0.1
2,165,210	+		GFF2129	0.30	-2.7
2,165,211	-		GFF2129	0.30	-1.2
2,165,214	+		GFF2129	0.31	-0.2
2,165,244	+		GFF2129	0.37	+0.3
2,165,244	+		GFF2129	0.37	-0.0
2,165,248	-		GFF2129	0.38	-1.1
2,165,257	-		GFF2129	0.40	-2.2
2,165,286	+		GFF2129	0.45	+0.8
2,165,291	-		GFF2129	0.46	-0.3
2,165,331	+		GFF2129	0.54	+2.0
2,165,340	+		GFF2129	0.56	+0.3
2,165,340	+		GFF2129	0.56	-1.1
2,165,348	-		GFF2129	0.58	-0.4
2,165,348	-		GFF2129	0.58	-1.6
2,165,359	+		GFF2129	0.60	+0.3
2,165,367	-		GFF2129	0.62	-1.1
2,165,378	+		GFF2129	0.64	+0.6
2,165,381	+		GFF2129	0.64	-0.4
2,165,386	+		GFF2129	0.65	+0.3
2,165,386	-		GFF2129	0.65	-0.2
2,165,404	+		GFF2129	0.69	+1.0
2,165,412	-		GFF2129	0.71	+1.1
2,165,423	-		GFF2129	0.73	-0.7
2,165,428	+		GFF2129	0.74	-0.4
2,165,430	+		GFF2129	0.74	-1.7
2,165,473	+		GFF2129	0.83	+0.6
2,165,473	+		GFF2129	0.83	+0.5
2,165,481	-		GFF2129	0.85	-1.2
2,165,481	-		GFF2129	0.85	-0.0
2,165,499	+		GFF2129	0.88	-0.2
2,165,521	+				+0.2
2,165,521	+				-0.4
2,165,521	+				-1.8
2,165,529	-				-1.3
2,165,529	-				-1.8
2,165,529	-				-0.5
2,165,554	-				+0.4
2,165,572	+				+0.1
2,165,580	-				-0.8
2,165,625	+				+0.0
2,165,652	+				+0.1
2,165,660	-				+0.7
2,165,679	+				-0.2
2,165,679	+				-1.4
2,165,679	+				-0.5
2,165,679	+				-1.9
2,165,679	+				-0.4
2,165,679	+				-1.0
2,165,687	-				+0.7
2,165,687	-				+0.2
2,165,687	-				-0.2
2,165,722	+				+0.7
2,165,722	+				-1.8
2,165,738	+				-0.7
2,165,738	+				+0.9
2,165,741	+				-0.5
2,165,746	-				+0.2
2,165,746	-				+0.4
2,165,746	-				-0.9
2,165,746	-				-0.4
2,165,746	-				-0.4
2,165,746	-				-0.3
2,165,781	-		GFF2130	0.12	-0.5
2,165,807	+		GFF2130	0.14	-0.4
2,165,807	-		GFF2130	0.14	-0.7
2,165,813	-		GFF2130	0.15	+0.2
2,165,813	-		GFF2130	0.15	+0.8
2,165,820	-		GFF2130	0.15	-0.1
2,165,826	-		GFF2130	0.16	+0.6
2,165,828	+		GFF2130	0.16	-0.7
2,165,833	+		GFF2130	0.16	-0.5
2,165,833	+		GFF2130	0.16	+1.6
2,165,836	-		GFF2130	0.16	-1.4
2,165,841	-		GFF2130	0.17	-0.6
2,165,841	-		GFF2130	0.17	+0.9
2,165,841	-		GFF2130	0.17	-0.1
2,165,841	-		GFF2130	0.17	-1.4
2,165,841	-		GFF2130	0.17	-0.7
2,165,843	+		GFF2130	0.17	-0.7
2,165,845	+		GFF2130	0.17	-0.0
2,165,851	+		GFF2130	0.18	+0.3
2,165,853	-		GFF2130	0.18	-0.7
2,165,867	+		GFF2130	0.19	+1.0
2,165,900	+		GFF2130	0.22	+0.5
2,165,908	-		GFF2130	0.22	-1.4
2,165,919	+		GFF2130	0.23	-1.5
2,165,919	+		GFF2130	0.23	-0.9
2,165,919	+		GFF2130	0.23	-0.9
2,165,919	+		GFF2130	0.23	-1.3
2,165,919	+		GFF2130	0.23	-0.6
2,165,919	+		GFF2130	0.23	+0.5
2,165,919	+		GFF2130	0.23	+0.9
2,165,919	+		GFF2130	0.23	-1.3
2,165,919	+		GFF2130	0.23	-0.1
2,165,920	-		GFF2130	0.23	-0.2
2,165,927	-		GFF2130	0.24	+0.1
2,165,935	+		GFF2130	0.25	-2.2
2,165,935	+		GFF2130	0.25	-0.2
2,165,935	+		GFF2130	0.25	+1.7
2,165,943	-		GFF2130	0.25	+0.9
2,165,945	+		GFF2130	0.25	+1.1
2,165,945	+		GFF2130	0.25	+0.1
2,165,945	+		GFF2130	0.25	-0.3
2,165,945	+		GFF2130	0.25	-1.2
2,165,945	+		GFF2130	0.25	-1.2
2,165,953	-		GFF2130	0.26	+0.6
2,165,953	-		GFF2130	0.26	+1.4
2,165,955	+		GFF2130	0.26	-1.4
2,165,963	-		GFF2130	0.27	+1.0
2,165,979	+		GFF2130	0.28	-0.7
2,165,979	+		GFF2130	0.28	+1.1
2,165,979	+		GFF2130	0.28	+0.3
2,165,979	+		GFF2130	0.28	+0.0
2,165,986	-		GFF2130	0.29	-2.8
2,165,987	-		GFF2130	0.29	-0.1
2,166,004	+		GFF2130	0.30	-2.5
2,166,011	-		GFF2130	0.31	-0.9
2,166,012	-		GFF2130	0.31	-1.7
2,166,012	-		GFF2130	0.31	-0.5
2,166,028	+		GFF2130	0.32	-0.4
2,166,028	+		GFF2130	0.32	+0.0
2,166,028	+		GFF2130	0.32	-0.2
2,166,035	+		GFF2130	0.33	+1.1
2,166,036	-		GFF2130	0.33	-1.4
2,166,036	-		GFF2130	0.33	-1.1
2,166,038	+		GFF2130	0.33	-0.2
2,166,056	+		GFF2130	0.35	-0.4
2,166,075	+		GFF2130	0.36	-0.4
2,166,083	-		GFF2130	0.37	-1.3
2,166,083	-		GFF2130	0.37	-1.0
2,166,083	-		GFF2130	0.37	-0.3
2,166,084	+		GFF2130	0.37	-1.3
2,166,089	+		GFF2130	0.37	-0.1
2,166,097	+		GFF2130	0.38	-0.6
2,166,097	-		GFF2130	0.38	+0.1
2,166,097	-		GFF2130	0.38	+0.1
2,166,105	-		GFF2130	0.39	-1.8
2,166,115	-		GFF2130	0.39	+0.3
2,166,135	+		GFF2130	0.41	+0.1
2,166,143	+		GFF2130	0.42	+0.3
2,166,150	+		GFF2130	0.42	-0.2
2,166,193	+		GFF2130	0.46	+1.1
2,166,208	+		GFF2130	0.47	-1.4
2,166,211	-		GFF2130	0.47	+0.1
2,166,212	-		GFF2130	0.47	+0.9
2,166,214	-		GFF2130	0.48	+1.1
2,166,214	-		GFF2130	0.48	+0.7
2,166,219	-		GFF2130	0.48	-0.6
2,166,226	+		GFF2130	0.49	-0.0
2,166,229	-		GFF2130	0.49	+0.7
2,166,234	-		GFF2130	0.49	-1.7
2,166,262	+		GFF2130	0.52	+0.3
2,166,265	-		GFF2130	0.52	+0.4
2,166,268	+		GFF2130	0.52	+0.9
2,166,282	+		GFF2130	0.53	-1.4
2,166,287	+		GFF2130	0.54	-1.7
2,166,297	+		GFF2130	0.54	-0.1
2,166,297	+		GFF2130	0.54	+0.3
2,166,297	+		GFF2130	0.54	-0.7
2,166,310	+		GFF2130	0.56	-1.4
2,166,321	+		GFF2130	0.56	-2.0
2,166,329	-		GFF2130	0.57	-0.4
2,166,329	-		GFF2130	0.57	-0.4
2,166,329	-		GFF2130	0.57	-0.9
2,166,338	+		GFF2130	0.58	-1.0
2,166,344	-		GFF2130	0.58	-0.4
2,166,347	+		GFF2130	0.59	+1.6
2,166,347	+		GFF2130	0.59	-2.7
2,166,347	+		GFF2130	0.59	+0.7
2,166,347	+		GFF2130	0.59	+0.6
2,166,347	+		GFF2130	0.59	-0.0
2,166,347	+		GFF2130	0.59	+1.3
2,166,347	+		GFF2130	0.59	-1.2
2,166,347	+		GFF2130	0.59	-1.3
2,166,347	+		GFF2130	0.59	+0.3
2,166,347	+		GFF2130	0.59	+0.7
2,166,347	+		GFF2130	0.59	+0.1
2,166,355	+		GFF2130	0.59	-0.1
2,166,355	-		GFF2130	0.59	-0.4
2,166,355	-		GFF2130	0.59	-0.1
2,166,355	-		GFF2130	0.59	-1.2
2,166,355	-		GFF2130	0.59	-0.0
2,166,355	-		GFF2130	0.59	+0.3
2,166,355	-		GFF2130	0.59	-0.8
2,166,355	-		GFF2130	0.59	-0.4
2,166,355	-		GFF2130	0.59	+1.9
2,166,355	-		GFF2130	0.59	-0.2
2,166,355	-		GFF2130	0.59	-0.6
2,166,355	-		GFF2130	0.59	-0.1
2,166,355	-		GFF2130	0.59	+0.4
2,166,374	+		GFF2130	0.61	+1.0
2,166,382	+		GFF2130	0.61	+1.2
2,166,382	+		GFF2130	0.61	-0.3
2,166,419	+		GFF2130	0.65	+0.1
2,166,420	-		GFF2130	0.65	+0.1
2,166,480	-		GFF2130	0.70	-1.8
2,166,484	-		GFF2130	0.70	-1.3
2,166,492	+		GFF2130	0.71	-0.0
2,166,492	+		GFF2130	0.71	-0.6
2,166,518	+		GFF2130	0.73	+0.7
2,166,544	+		GFF2130	0.75	-1.4
2,166,562	+		GFF2130	0.76	+0.0
2,166,588	+		GFF2130	0.78	+1.1
2,166,588	+		GFF2130	0.78	-1.0
2,166,588	+		GFF2130	0.78	-0.1
2,166,588	+		GFF2130	0.78	+0.8
2,166,591	-		GFF2130	0.79	-0.4
2,166,596	-		GFF2130	0.79	+1.1
2,166,601	-		GFF2130	0.80	-0.5
2,166,606	+		GFF2130	0.80	-0.7
2,166,606	+		GFF2130	0.80	-1.4
2,166,606	+		GFF2130	0.80	+1.2
2,166,606	+		GFF2130	0.80	-1.5
2,166,611	+		GFF2130	0.80	-1.4
2,166,649	-		GFF2130	0.83	-1.9
2,166,652	+		GFF2130	0.84	-1.1
2,166,671	+		GFF2130	0.85	-1.6
2,166,681	+		GFF2130	0.86	-0.2
2,166,693	-		GFF2130	0.87	+0.6
2,166,739	+				-1.3
2,166,739	+				-0.2
2,166,739	+				+1.3
2,166,739	+				-0.5
2,166,739	+				+1.0
2,166,739	+				-2.1
2,166,739	+				-0.4
2,166,739	+				+0.4
2,166,739	+				-0.8
2,166,739	+				-0.4
2,166,739	+				+1.4
2,166,747	-				+1.1
2,166,747	-				-1.6
2,166,747	-				-0.3
2,166,747	-				-0.5
2,166,754	+				-1.0
2,166,754	+				-1.0
2,166,754	+				-2.3
2,166,754	+				-0.7
2,166,754	+				-1.7
2,166,762	-				-0.4
2,166,762	-				-1.0
2,166,762	-				+0.2
2,166,762	-				+0.1
2,166,762	-				+0.2
2,166,773	+				-1.1
2,166,809	-				-0.2
2,166,859	-				-2.7
2,166,861	+				+0.6
2,166,875	-				-0.2
2,166,883	+				+0.0
2,166,906	+				-1.2
2,166,933	-				-0.9
2,166,939	+				-1.3
2,166,947	-				-0.5
2,166,950	+				-0.7
2,166,951	-				-1.6
2,167,027	-		GFF2131	0.13	+0.6
2,167,029	+		GFF2131	0.13	-2.3
2,167,029	+		GFF2131	0.13	-0.1
2,167,029	+		GFF2131	0.13	-1.6
2,167,037	-		GFF2131	0.14	-1.3
2,167,037	-		GFF2131	0.14	+0.1
2,167,037	-		GFF2131	0.14	-0.8
2,167,037	-		GFF2131	0.14	+0.3
2,167,037	-		GFF2131	0.14	-0.4
2,167,037	-		GFF2131	0.14	-1.2
2,167,037	-		GFF2131	0.14	-1.4
2,167,050	+		GFF2131	0.15	-1.4
2,167,054	+		GFF2131	0.15	-0.7
2,167,084	+		GFF2131	0.18	-0.6
2,167,084	-		GFF2131	0.18	+0.7
2,167,097	-		GFF2131	0.19	-3.0
2,167,112	+		GFF2131	0.20	-1.2
2,167,113	+		GFF2131	0.20	-3.5
2,167,113	+		GFF2131	0.20	-1.0
2,167,117	+		GFF2131	0.21	-1.4
2,167,118	-		GFF2131	0.21	+0.0
2,167,125	-		GFF2131	0.21	-0.3
2,167,126	-		GFF2131	0.21	-0.3
2,167,164	-		GFF2131	0.25	-1.9
2,167,188	+		GFF2131	0.27	-0.9
2,167,188	+		GFF2131	0.27	-3.4
2,167,188	+		GFF2131	0.27	+0.1
2,167,192	-		GFF2131	0.27	-1.8
2,167,196	-		GFF2131	0.27	-0.2
2,167,221	-		GFF2131	0.29	+0.1
2,167,221	-		GFF2131	0.29	-1.6
2,167,274	+		GFF2131	0.34	-1.4
2,167,275	-		GFF2131	0.34	-1.3
2,167,277	-		GFF2131	0.34	-1.8
2,167,282	-		GFF2131	0.34	-2.0
2,167,290	-		GFF2131	0.35	-2.5
2,167,300	+		GFF2131	0.36	-2.8
2,167,310	+		GFF2131	0.37	-0.8
2,167,332	-		GFF2131	0.38	-1.5
2,167,374	-		GFF2131	0.42	-1.6
2,167,385	+		GFF2131	0.43	-1.2
2,167,392	+		GFF2131	0.43	-0.6
2,167,399	-		GFF2131	0.44	-1.2
2,167,400	-		GFF2131	0.44	-1.5
2,167,400	-		GFF2131	0.44	-3.0
2,167,400	-		GFF2131	0.44	-0.8
2,167,400	-		GFF2131	0.44	-1.5
2,167,400	-		GFF2131	0.44	-0.7
2,167,400	-		GFF2131	0.44	-0.3
2,167,400	-		GFF2131	0.44	-1.7
2,167,400	-		GFF2131	0.44	-1.1
2,167,423	-		GFF2131	0.46	-0.3
2,167,423	-		GFF2131	0.46	-0.4
2,167,433	+		GFF2131	0.47	-1.9
2,167,434	-		GFF2131	0.47	-2.2
2,167,453	+		GFF2131	0.49	-1.4
2,167,453	+		GFF2131	0.49	-2.0
2,167,461	-		GFF2131	0.49	-1.6
2,167,461	-		GFF2131	0.49	-0.2
2,167,471	+		GFF2131	0.50	-1.2
2,167,472	-		GFF2131	0.50	-0.8
2,167,481	+		GFF2131	0.51	-2.5
2,167,491	+		GFF2131	0.52	+0.0
2,167,500	+		GFF2131	0.52	-2.5
2,167,508	-		GFF2131	0.53	-0.6
2,167,513	-		GFF2131	0.54	-3.1
2,167,517	+		GFF2131	0.54	-0.9
2,167,535	+		GFF2131	0.55	-1.4
2,167,561	+		GFF2131	0.58	-0.3
2,167,569	-		GFF2131	0.58	-1.0
2,167,583	+		GFF2131	0.59	-0.9
2,167,591	-		GFF2131	0.60	-0.2
2,167,604	-		GFF2131	0.61	-2.7
2,167,604	-		GFF2131	0.61	-1.2
2,167,608	-		GFF2131	0.61	-0.8
2,167,637	+		GFF2131	0.64	-0.9
2,167,637	+		GFF2131	0.64	-0.4
2,167,639	+		GFF2131	0.64	-1.5
2,167,665	+		GFF2131	0.66	-0.1
2,167,680	+		GFF2131	0.67	+0.6
2,167,684	-		GFF2131	0.68	-1.9
2,167,750	+		GFF2131	0.73	-1.9
2,167,750	+		GFF2131	0.73	-0.3
2,167,750	+		GFF2131	0.73	+1.3
2,167,750	+		GFF2131	0.73	-1.8
2,167,758	-		GFF2131	0.74	-0.1
2,167,758	-		GFF2131	0.74	-2.1
2,167,778	-		GFF2131	0.76	-0.2
2,167,793	+		GFF2131	0.77	-2.5
2,167,793	+		GFF2131	0.77	-1.0
2,167,793	+		GFF2131	0.77	-1.0
2,167,801	-		GFF2131	0.77	+0.8
2,167,813	+		GFF2131	0.78	-2.2
2,167,816	-		GFF2131	0.79	-2.2
2,167,816	-		GFF2131	0.79	-0.7
2,167,816	-		GFF2131	0.79	-2.1
2,167,821	-		GFF2131	0.79	-1.8
2,167,823	-		GFF2131	0.79	-0.2
2,167,825	+		GFF2131	0.79	-1.5
2,167,836	+		GFF2131	0.80	+0.1
2,167,836	+		GFF2131	0.80	-0.9
2,167,836	+		GFF2131	0.80	-3.1
2,167,836	+		GFF2131	0.80	-0.8