Strain Fitness in Sphingobium sp. HT1-2 around GFF2074

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,110,265	-		GFF2073	0.49	+1.2
2,110,276	+		GFF2073	0.50	-1.0
2,110,281	+		GFF2073	0.50	-1.7
2,110,281	+		GFF2073	0.50	-0.3
2,110,281	+		GFF2073	0.50	-1.0
2,110,281	+		GFF2073	0.50	-1.2
2,110,281	+		GFF2073	0.50	-1.1
2,110,284	-		GFF2073	0.50	+0.3
2,110,286	+		GFF2073	0.50	+1.0
2,110,289	-		GFF2073	0.50	-2.3
2,110,312	+		GFF2073	0.51	-0.7
2,110,312	+		GFF2073	0.51	-1.3
2,110,312	+		GFF2073	0.51	-2.0
2,110,320	-		GFF2073	0.52	-1.9
2,110,324	+		GFF2073	0.52	-0.4
2,110,324	+		GFF2073	0.52	+0.7
2,110,330	+		GFF2073	0.52	+0.6
2,110,338	+		GFF2073	0.53	-1.3
2,110,342	-		GFF2073	0.53	-0.2
2,110,357	-		GFF2073	0.54	-0.5
2,110,363	-		GFF2073	0.54	+0.2
2,110,377	-		GFF2073	0.55	-0.2
2,110,377	-		GFF2073	0.55	-0.7
2,110,378	+		GFF2073	0.55	+0.2
2,110,386	-		GFF2073	0.55	-0.1
2,110,433	-		GFF2073	0.58	-0.7
2,110,460	+		GFF2073	0.59	-0.7
2,110,471	+		GFF2073	0.60	-1.4
2,110,475	+		GFF2073	0.60	-3.3
2,110,475	+		GFF2073	0.60	-0.5
2,110,483	-		GFF2073	0.60	-0.2
2,110,483	-		GFF2073	0.60	-1.3
2,110,486	+		GFF2073	0.60	-0.5
2,110,489	-		GFF2073	0.61	-1.4
2,110,492	-		GFF2073	0.61	-0.6
2,110,492	-		GFF2073	0.61	-0.4
2,110,511	-		GFF2073	0.62	-0.8
2,110,561	-		GFF2073	0.64	-0.6
2,110,561	-		GFF2073	0.64	-0.3
2,110,571	+		GFF2073	0.65	+0.1
2,110,571	+		GFF2073	0.65	-0.7
2,110,581	+		GFF2073	0.65	-0.3
2,110,608	+		GFF2073	0.67	-2.0
2,110,629	-		GFF2073	0.68	-0.4
2,110,631	-		GFF2073	0.68	-2.2
2,110,645	+		GFF2073	0.69	+0.6
2,110,647	+		GFF2073	0.69	-0.6
2,110,652	+		GFF2073	0.69	+0.5
2,110,653	-		GFF2073	0.69	-2.3
2,110,653	-		GFF2073	0.69	+0.3
2,110,655	+		GFF2073	0.69	-0.5
2,110,663	-		GFF2073	0.70	-0.4
2,110,673	-		GFF2073	0.70	+0.6
2,110,674	+		GFF2073	0.70	-0.2
2,110,674	+		GFF2073	0.70	-1.4
2,110,682	-		GFF2073	0.71	+0.1
2,110,682	-		GFF2073	0.71	-0.7
2,110,700	+		GFF2073	0.72	+0.0
2,110,744	+		GFF2073	0.74	-0.8
2,110,752	-		GFF2073	0.74	-0.4
2,110,757	-		GFF2073	0.75	-1.5
2,110,800	+		GFF2073	0.77	+0.8
2,110,806	-		GFF2073	0.77	+1.0
2,110,813	+		GFF2073	0.78	+0.5
2,110,813	+		GFF2073	0.78	-1.2
2,110,818	+		GFF2073	0.78	+0.2
2,110,818	+		GFF2073	0.78	-0.7
2,110,818	+		GFF2073	0.78	-0.6
2,110,821	-		GFF2073	0.78	+0.1
2,110,826	-		GFF2073	0.78	-0.5
2,110,871	-		GFF2073	0.81	-1.6
2,110,887	-		GFF2073	0.81	+0.3
2,110,894	-		GFF2073	0.82	+0.2
2,110,938	-		GFF2073	0.84	-0.1
2,110,944	-		GFF2073	0.84	-0.9
2,110,947	+		GFF2073	0.84	-0.3
2,110,947	+		GFF2073	0.84	-1.0
2,110,955	-		GFF2073	0.85	-1.8
2,110,955	-		GFF2073	0.85	-1.2
2,110,955	-		GFF2073	0.85	-1.2
2,110,955	-		GFF2073	0.85	+1.5
2,110,955	-		GFF2073	0.85	-0.7
2,110,957	+		GFF2073	0.85	+0.5
2,110,965	-		GFF2073	0.85	-0.2
2,110,981	-		GFF2073	0.86	-2.3
2,111,034	-		GFF2073	0.89	-0.9
2,111,047	+		GFF2073	0.90	-0.4
2,111,052	+		GFF2073	0.90	-0.4
2,111,066	+				+0.2
2,111,066	+				-2.2
2,111,075	-				-2.1
2,111,081	+				-2.2
2,111,081	+				+0.4
2,111,089	-				+0.2
2,111,118	+				-1.0
2,111,118	+				-1.3
2,111,125	+				-0.3
2,111,147	+				+0.1
2,111,157	-				-2.5
2,111,174	-				-1.5
2,111,225	+				-1.4
2,111,232	-				+0.8
2,111,271	+				+0.7
2,111,277	-				+0.7
2,111,277	-				+0.4
2,111,279	-				+0.9
2,111,291	-				+2.0
2,111,321	-		GFF2074	0.13	-0.4
2,111,335	+		GFF2074	0.15	+1.9
2,111,384	-		GFF2074	0.24	-0.3
2,111,386	+		GFF2074	0.24	+0.2
2,111,390	+		GFF2074	0.25	+0.4
2,111,390	+		GFF2074	0.25	+0.8
2,111,390	+		GFF2074	0.25	+0.2
2,111,398	-		GFF2074	0.26	-0.7
2,111,398	-		GFF2074	0.26	-0.4
2,111,398	-		GFF2074	0.26	+0.2
2,111,400	+		GFF2074	0.26	+0.3
2,111,400	+		GFF2074	0.26	-2.0
2,111,400	+		GFF2074	0.26	-0.0
2,111,400	+		GFF2074	0.26	-1.8
2,111,400	-		GFF2074	0.26	-0.1
2,111,404	-		GFF2074	0.27	+0.7
2,111,404	-		GFF2074	0.27	-0.3
2,111,405	+		GFF2074	0.27	-0.9
2,111,405	+		GFF2074	0.27	+0.7
2,111,408	-		GFF2074	0.28	-0.1
2,111,413	-		GFF2074	0.28	-2.1
2,111,429	+		GFF2074	0.31	-0.8
2,111,437	-		GFF2074	0.32	-0.2
2,111,437	-		GFF2074	0.32	-0.1
2,111,438	+		GFF2074	0.33	-0.3
2,111,439	+		GFF2074	0.33	-0.3
2,111,439	+		GFF2074	0.33	+0.5
2,111,447	-		GFF2074	0.34	-0.3
2,111,447	-		GFF2074	0.34	-0.6
2,111,447	-		GFF2074	0.34	-0.3
2,111,477	+		GFF2074	0.39	-1.1
2,111,493	+		GFF2074	0.42	-0.8
2,111,527	-		GFF2074	0.48	-2.1
2,111,534	-		GFF2074	0.49	-1.5
2,111,556	+		GFF2074	0.53	-0.5
2,111,593	+		GFF2074	0.59	-0.6
2,111,594	+		GFF2074	0.59	+1.6
2,111,602	-		GFF2074	0.60	-0.2
2,111,619	-		GFF2074	0.63	+1.6
2,111,650	+		GFF2074	0.68	-0.2
2,111,664	+		GFF2074	0.71	+1.1
2,111,676	+		GFF2074	0.73	+0.5
2,111,698	+		GFF2074	0.76	+0.1
2,111,700	-		GFF2074	0.77	+0.2
2,111,706	-		GFF2074	0.78	-0.9
2,111,706	-		GFF2074	0.78	+0.1
2,111,706	-		GFF2074	0.78	-1.8
2,111,731	-		GFF2074	0.82	-0.5
2,111,733	+		GFF2074	0.82	+0.2
2,111,744	+		GFF2074	0.84	-1.4
2,111,744	+		GFF2074	0.84	-0.2
2,111,747	-		GFF2074	0.85	+0.4
2,111,752	+		GFF2074	0.86	-0.8
2,111,752	+		GFF2074	0.86	+0.3
2,111,752	+		GFF2074	0.86	+0.1
2,111,752	+		GFF2074	0.86	-1.6
2,111,757	+		GFF2074	0.86	-0.5
2,111,760	-		GFF2074	0.87	-2.1
2,111,765	-		GFF2074	0.88	-0.5
2,111,765	-		GFF2074	0.88	+0.1
2,111,766	+		GFF2074	0.88	-0.8
2,111,795	+				-1.3
2,111,795	+				+0.0
2,111,795	+				+0.3
2,111,800	+				-1.3
2,111,803	-				-0.7
2,111,825	+				+0.3
2,111,833	+				+0.9
2,111,848	+				-1.4
2,111,854	-				-0.4
2,111,889	+				-0.4
2,111,895	+				+0.3
2,111,895	+				+0.4
2,111,903	-		GFF2075	0.10	+0.8
2,111,903	-		GFF2075	0.10	-1.7
2,111,903	-		GFF2075	0.10	-0.3
2,111,913	-		GFF2075	0.12	+0.5
2,111,929	-		GFF2075	0.14	-1.1
2,111,944	+		GFF2075	0.17	-2.3
2,111,954	-		GFF2075	0.18	-0.5
2,111,991	+		GFF2075	0.24	-0.2
2,112,017	+		GFF2075	0.28	-1.0
2,112,094	-		GFF2075	0.39	+0.9
2,112,094	-		GFF2075	0.39	+0.0
2,112,094	-		GFF2075	0.39	-1.5
2,112,097	+		GFF2075	0.40	-1.4
2,112,099	-		GFF2075	0.40	-0.5
2,112,103	+		GFF2075	0.41	-0.7
2,112,111	-		GFF2075	0.42	-2.1
2,112,151	+		GFF2075	0.48	-0.0
2,112,151	-		GFF2075	0.48	-2.7
2,112,158	+		GFF2075	0.49	-0.9
2,112,158	+		GFF2075	0.49	-0.2
2,112,161	-		GFF2075	0.50	+0.8
2,112,177	-		GFF2075	0.52	+0.6
2,112,212	-		GFF2075	0.57	+0.3
2,112,215	-		GFF2075	0.58	+1.9
2,112,218	+		GFF2075	0.58	+0.2
2,112,235	+		GFF2075	0.61	-0.2
2,112,243	-		GFF2075	0.62	-0.1
2,112,250	-		GFF2075	0.63	-0.3
2,112,279	+		GFF2075	0.67	-1.3
2,112,279	+		GFF2075	0.67	+0.6
2,112,279	+		GFF2075	0.67	-0.1
2,112,279	+		GFF2075	0.67	-0.8
2,112,279	+		GFF2075	0.67	-1.3
2,112,279	+		GFF2075	0.67	+0.2
2,112,287	-		GFF2075	0.69	+0.0
2,112,287	-		GFF2075	0.69	-1.3
2,112,287	-		GFF2075	0.69	+0.7
2,112,287	-		GFF2075	0.69	+0.2
2,112,287	-		GFF2075	0.69	-0.6
2,112,287	-		GFF2075	0.69	-1.4
2,112,287	-		GFF2075	0.69	-0.4
2,112,309	-		GFF2075	0.72	+0.3
2,112,309	-		GFF2075	0.72	+0.6
2,112,309	-		GFF2075	0.72	-0.6
2,112,321	+		GFF2075	0.74	+0.3
2,112,323	+		GFF2075	0.74	+0.8
2,112,323	+		GFF2075	0.74	-1.1
2,112,323	+		GFF2075	0.74	-0.8
2,112,323	+		GFF2075	0.74	-0.8
2,112,323	+		GFF2075	0.74	-0.6
2,112,323	+		GFF2075	0.74	+1.1
2,112,323	+		GFF2075	0.74	-0.7
2,112,323	+		GFF2075	0.74	-0.5
2,112,323	+		GFF2075	0.74	-1.4
2,112,323	+		GFF2075	0.74	+0.3
2,112,331	-		GFF2075	0.75	-0.8
2,112,331	-		GFF2075	0.75	-0.7
2,112,331	-		GFF2075	0.75	-1.7
2,112,331	-		GFF2075	0.75	+0.7
2,112,331	-		GFF2075	0.75	-0.0
2,112,331	-		GFF2075	0.75	-0.2
2,112,331	-		GFF2075	0.75	+0.5
2,112,331	-		GFF2075	0.75	-0.2
2,112,343	+		GFF2075	0.77	-2.2
2,112,343	+		GFF2075	0.77	-0.3
2,112,343	+		GFF2075	0.77	-0.0
2,112,343	+		GFF2075	0.77	+0.6
2,112,343	+		GFF2075	0.77	+0.2
2,112,343	+		GFF2075	0.77	-0.7
2,112,343	+		GFF2075	0.77	-1.4
2,112,343	+		GFF2075	0.77	-0.2
2,112,343	+		GFF2075	0.77	+0.9
2,112,343	+		GFF2075	0.77	-0.2
2,112,343	+		GFF2075	0.77	-0.2
2,112,343	+		GFF2075	0.77	+0.1
2,112,343	+		GFF2075	0.77	-1.5
2,112,343	+		GFF2075	0.77	-1.0
2,112,343	+		GFF2075	0.77	-0.8
2,112,343	+		GFF2075	0.77	+0.5
2,112,344	+		GFF2075	0.77	-0.1
2,112,346	-		GFF2075	0.78	+0.2
2,112,346	-		GFF2075	0.78	-0.7
2,112,351	-		GFF2075	0.78	-0.1
2,112,351	-		GFF2075	0.78	-0.5
2,112,351	-		GFF2075	0.78	-1.9
2,112,351	-		GFF2075	0.78	-0.5
2,112,351	-		GFF2075	0.78	+0.1
2,112,351	-		GFF2075	0.78	-0.3
2,112,351	-		GFF2075	0.78	+0.8
2,112,351	-		GFF2075	0.78	+0.9
2,112,351	-		GFF2075	0.78	-0.6
2,112,351	-		GFF2075	0.78	+0.0
2,112,351	-		GFF2075	0.78	-0.1
2,112,356	-		GFF2075	0.79	+0.3
2,112,356	-		GFF2075	0.79	+1.6
2,112,369	+		GFF2075	0.81	-0.1
2,112,399	+		GFF2075	0.86	-1.5
2,112,399	-		GFF2075	0.86	-1.7
2,112,406	-		GFF2075	0.87	-1.5
2,112,406	-		GFF2075	0.87	-0.7
2,112,411	+		GFF2075	0.87	-2.5
2,112,461	+				+0.0
2,112,468	-				-1.7
2,112,468	-				-0.5
2,112,486	+				-0.3
2,112,494	-				-0.3
2,112,497	-				+1.6
2,112,504	+				-1.7
2,112,504	+				-0.2
2,112,504	+				+1.2
2,112,504	+				-0.3
2,112,504	+				+0.3
2,112,504	+				+1.0
2,112,504	+				-1.2
2,112,504	+				+0.7
2,112,512	-				-1.0
2,112,512	-				-0.7
2,112,512	-				+0.0
2,112,514	+				+0.8
2,112,539	+				-1.5
2,112,598	-				-3.2
2,112,602	+				-1.5
2,112,635	+				-1.3