Strain Fitness in Sphingobium sp. HT1-2 around GFF2054

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,090,538	-				+1.3
2,090,609	+		GFF2053	0.13	+0.7
2,090,609	+		GFF2053	0.13	-0.7
2,090,609	+		GFF2053	0.13	+0.1
2,090,609	+		GFF2053	0.13	-0.7
2,090,617	-		GFF2053	0.14	-0.9
2,090,617	-		GFF2053	0.14	-0.6
2,090,617	-		GFF2053	0.14	-0.5
2,090,617	-		GFF2053	0.14	+1.1
2,090,617	-		GFF2053	0.14	-2.0
2,090,617	-		GFF2053	0.14	+0.1
2,090,654	+		GFF2053	0.18	-1.7
2,090,708	-		GFF2053	0.24	+0.9
2,090,733	-		GFF2053	0.27	+0.7
2,090,738	-		GFF2053	0.27	-0.3
2,090,738	-		GFF2053	0.27	-1.3
2,090,912	-		GFF2053	0.46	-0.0
2,091,104	-		GFF2053	0.67	-1.2
2,091,153	+		GFF2053	0.72	+1.5
2,091,176	+		GFF2053	0.75	+0.5
2,091,276	-		GFF2053	0.85	-0.9
2,091,338	+				-0.3
2,091,347	-				+1.7
2,091,347	-				-1.1
2,091,434	+				-0.8
2,091,471	+				-0.4
2,091,479	-				-3.1
2,091,538	+				-0.4
2,091,546	-				-1.0
2,091,592	+				-0.7
2,091,633	-				-1.6
2,091,633	-				-2.5
2,091,658	-				-1.8
2,091,686	+				-1.4
2,091,691	+		GFF2054	0.10	+0.1
2,091,691	+		GFF2054	0.10	-1.7
2,091,691	+		GFF2054	0.10	+1.5
2,091,692	+		GFF2054	0.10	-0.5
2,091,696	+		GFF2054	0.10	-2.0
2,091,699	-		GFF2054	0.11	-2.1
2,091,704	-		GFF2054	0.11	-1.8
2,091,715	+		GFF2054	0.11	-2.7
2,091,715	+		GFF2054	0.11	-1.7
2,091,725	+		GFF2054	0.12	-2.6
2,091,725	+		GFF2054	0.12	-0.7
2,091,730	+		GFF2054	0.12	-2.1
2,091,735	+		GFF2054	0.13	-2.6
2,091,735	+		GFF2054	0.13	-1.0
2,091,735	+		GFF2054	0.13	-2.3
2,091,735	+		GFF2054	0.13	-1.7
2,091,738	-		GFF2054	0.13	-2.8
2,091,743	-		GFF2054	0.13	+1.3
2,091,751	+		GFF2054	0.13	-1.6
2,091,760	-		GFF2054	0.14	-1.9
2,091,774	+		GFF2054	0.15	-1.3
2,091,787	+		GFF2054	0.16	-2.0
2,091,815	+		GFF2054	0.17	-3.8
2,091,823	-		GFF2054	0.18	-1.8
2,091,823	-		GFF2054	0.18	-1.9
2,091,828	-		GFF2054	0.18	-2.4
2,091,835	+		GFF2054	0.18	-2.4
2,091,883	+		GFF2054	0.21	-2.8
2,091,883	+		GFF2054	0.21	-3.7
2,091,883	+		GFF2054	0.21	-0.4
2,091,891	-		GFF2054	0.21	-2.8
2,091,891	-		GFF2054	0.21	-1.7
2,091,891	-		GFF2054	0.21	-1.8
2,091,891	-		GFF2054	0.21	-2.3
2,091,891	-		GFF2054	0.21	-2.8
2,091,891	-		GFF2054	0.21	-3.5
2,091,891	-		GFF2054	0.21	-0.6
2,091,891	-		GFF2054	0.21	-2.1
2,091,896	-		GFF2054	0.22	-1.5
2,091,896	-		GFF2054	0.22	-1.5
2,091,901	-		GFF2054	0.22	-0.9
2,091,936	-		GFF2054	0.24	-2.8
2,091,955	-		GFF2054	0.25	-2.7
2,092,025	+		GFF2054	0.29	-2.1
2,092,025	+		GFF2054	0.29	-2.0
2,092,025	+		GFF2054	0.29	-0.1
2,092,025	+		GFF2054	0.29	-3.0
2,092,036	+		GFF2054	0.30	-1.1
2,092,043	+		GFF2054	0.30	-2.8
2,092,057	-		GFF2054	0.31	-2.2
2,092,067	-		GFF2054	0.32	-2.7
2,092,138	-		GFF2054	0.36	-1.5
2,092,146	-		GFF2054	0.36	-2.1
2,092,146	-		GFF2054	0.36	-1.0
2,092,146	-		GFF2054	0.36	-2.6
2,092,177	+		GFF2054	0.38	-2.3
2,092,177	+		GFF2054	0.38	-2.2
2,092,182	+		GFF2054	0.38	-0.9
2,092,182	+		GFF2054	0.38	-1.3
2,092,185	-		GFF2054	0.38	-0.8
2,092,189	+		GFF2054	0.38	-1.3
2,092,227	+		GFF2054	0.41	-2.4
2,092,227	+		GFF2054	0.41	-1.6
2,092,227	+		GFF2054	0.41	-2.0
2,092,228	-		GFF2054	0.41	-2.6
2,092,232	+		GFF2054	0.41	-3.5
2,092,232	+		GFF2054	0.41	-1.2
2,092,235	-		GFF2054	0.41	-2.7
2,092,241	+		GFF2054	0.41	-3.0
2,092,249	-		GFF2054	0.42	-2.6
2,092,249	-		GFF2054	0.42	-0.7
2,092,250	-		GFF2054	0.42	-3.2
2,092,263	+		GFF2054	0.43	-0.5
2,092,263	+		GFF2054	0.43	-2.4
2,092,334	+		GFF2054	0.47	-2.1
2,092,334	+		GFF2054	0.47	-1.1
2,092,334	+		GFF2054	0.47	-1.2
2,092,335	+		GFF2054	0.47	-0.3
2,092,350	-		GFF2054	0.48	-0.3
2,092,392	-		GFF2054	0.50	-1.9
2,092,392	-		GFF2054	0.50	+0.1
2,092,393	-		GFF2054	0.50	-2.3
2,092,400	-		GFF2054	0.51	-3.1
2,092,423	-		GFF2054	0.52	-0.3
2,092,423	-		GFF2054	0.52	-1.2
2,092,501	-		GFF2054	0.56	-3.0
2,092,506	+		GFF2054	0.57	-1.6
2,092,514	-		GFF2054	0.57	-2.8
2,092,515	+		GFF2054	0.57	-0.2
2,092,538	-		GFF2054	0.58	-0.4
2,092,538	-		GFF2054	0.58	-1.9
2,092,597	+		GFF2054	0.62	-2.8
2,092,597	+		GFF2054	0.62	-1.9
2,092,600	-		GFF2054	0.62	-1.3
2,092,600	-		GFF2054	0.62	-2.1
2,092,605	-		GFF2054	0.62	-1.7
2,092,648	+		GFF2054	0.65	-0.2
2,092,648	+		GFF2054	0.65	-0.8
2,092,651	+		GFF2054	0.65	-0.6
2,092,651	+		GFF2054	0.65	-0.6
2,092,659	-		GFF2054	0.65	-2.8
2,092,673	+		GFF2054	0.66	-2.3
2,092,709	+		GFF2054	0.68	-3.0
2,092,717	-		GFF2054	0.69	-1.0
2,092,722	-		GFF2054	0.69	-2.6
2,092,722	-		GFF2054	0.69	-0.4
2,092,732	-		GFF2054	0.69	-1.5
2,092,789	-		GFF2054	0.73	-1.7
2,092,795	-		GFF2054	0.73	-2.7
2,092,817	+		GFF2054	0.74	-2.5
2,092,825	-		GFF2054	0.75	-1.3
2,092,906	+		GFF2054	0.79	-2.5
2,092,939	-		GFF2054	0.81	-2.8
2,092,953	-		GFF2054	0.82	-0.8
2,092,968	+		GFF2054	0.83	-2.5
2,092,973	-		GFF2054	0.83	-1.3
2,092,981	-		GFF2054	0.84	-3.0
2,093,005	+		GFF2054	0.85	-2.6
2,093,028	+		GFF2054	0.86	-2.8
2,093,045	+		GFF2054	0.87	-3.2
2,093,053	-		GFF2054	0.88	-2.2
2,093,053	-		GFF2054	0.88	-2.7
2,093,053	-		GFF2054	0.88	-1.4
2,093,158	+				-2.2
2,093,166	-				-3.1
2,093,214	+				-0.9
2,093,214	+				+1.8
2,093,214	+				-0.1
2,093,214	+				-0.9
2,093,214	+				+0.1
2,093,222	-				-2.5
2,093,232	-				-0.7
2,093,237	+				-0.3
2,093,247	+				+0.4
2,093,247	+				-2.1
2,093,248	+				-0.9
2,093,255	-				-1.6
2,093,260	+				+0.0
2,093,260	+				+0.8
2,093,260	+				+0.4
2,093,260	+				-0.0
2,093,263	-				-0.7
2,093,263	-				+0.7
2,093,268	-				-0.8
2,093,268	-				+1.7
2,093,268	-				+0.2
2,093,268	-				-0.5
2,093,268	-				-0.1
2,093,268	-				-0.7
2,093,268	-				-2.4
2,093,268	-				+1.8
2,093,268	-				-0.7
2,093,268	-				-0.5
2,093,273	-				-1.3
2,093,319	+		GFF2055	0.16	+0.1
2,093,327	-		GFF2055	0.18	+1.5
2,093,327	-		GFF2055	0.18	-1.4
2,093,327	-		GFF2055	0.18	+0.5
2,093,338	-		GFF2055	0.22	-0.3
2,093,338	-		GFF2055	0.22	-0.0
2,093,344	+		GFF2055	0.23	-0.0
2,093,365	+		GFF2055	0.29	-0.8
2,093,372	+		GFF2055	0.31	+0.4
2,093,373	-		GFF2055	0.32	-0.4
2,093,392	+		GFF2055	0.37	+0.9
2,093,400	-		GFF2055	0.39	-0.2
2,093,400	-		GFF2055	0.39	-0.7
2,093,414	+		GFF2055	0.43	-0.4
2,093,422	-		GFF2055	0.46	+2.6
2,093,437	+		GFF2055	0.50	-0.4
2,093,465	+		GFF2055	0.58	-0.3
2,093,477	-		GFF2055	0.61	-0.1
2,093,478	-		GFF2055	0.62	-0.2
2,093,499	-		GFF2055	0.68	-0.2
2,093,526	+		GFF2055	0.76	+1.5
2,093,541	-		GFF2055	0.80	+1.3
2,093,541	-		GFF2055	0.80	-0.5
2,093,546	-		GFF2055	0.81	+0.6
2,093,579	-				-1.6
2,093,625	+				-0.5
2,093,658	+				-2.7
2,093,658	+				-2.0
2,093,666	-		GFF2056	0.11	-2.1
2,093,689	+		GFF2056	0.15	-1.2
2,093,697	-		GFF2056	0.17	-1.3
2,093,728	+		GFF2056	0.23	-2.5
2,093,756	-		GFF2056	0.28	-0.1
2,093,756	-		GFF2056	0.28	-1.3
2,093,793	-		GFF2056	0.35	-1.3
2,093,802	-		GFF2056	0.37	-2.9
2,093,813	+		GFF2056	0.39	-2.8
2,093,821	-		GFF2056	0.41	-0.5
2,093,827	-		GFF2056	0.42	+1.5
2,093,864	+		GFF2056	0.49	-3.6
2,093,877	-		GFF2056	0.52	-0.0
2,093,893	+		GFF2056	0.55	-0.7
2,093,893	+		GFF2056	0.55	-3.4
2,093,893	+		GFF2056	0.55	-2.2
2,093,901	-		GFF2056	0.56	-0.1
2,093,901	-		GFF2056	0.56	-0.0
2,093,901	-		GFF2056	0.56	-1.2
2,093,901	-		GFF2056	0.56	-0.9
2,093,903	+		GFF2056	0.57	-0.8
2,093,903	+		GFF2056	0.57	-3.4
2,093,903	+		GFF2056	0.57	-3.4
2,093,903	+		GFF2056	0.57	-1.3
2,093,903	+		GFF2056	0.57	-3.2
2,093,903	+		GFF2056	0.57	-3.8
2,093,903	+		GFF2056	0.57	-0.9
2,093,903	+		GFF2056	0.57	-2.5
2,093,903	+		GFF2056	0.57	-3.1
2,093,903	+		GFF2056	0.57	-1.9
2,093,903	+		GFF2056	0.57	-2.0
2,093,903	+		GFF2056	0.57	-2.0
2,093,903	+		GFF2056	0.57	-1.3
2,093,911	-		GFF2056	0.58	-2.0
2,093,911	-		GFF2056	0.58	-1.4
2,093,911	-		GFF2056	0.58	-3.2
2,093,911	-		GFF2056	0.58	-1.5
2,093,911	-		GFF2056	0.58	-2.3
2,093,911	-		GFF2056	0.58	-2.6
2,093,911	-		GFF2056	0.58	-2.1
2,093,911	-		GFF2056	0.58	-0.1
2,093,911	-		GFF2056	0.58	-2.5
2,093,911	-		GFF2056	0.58	-0.3
2,093,911	-		GFF2056	0.58	-0.3
2,093,911	-		GFF2056	0.58	-1.6
2,093,911	-		GFF2056	0.58	-1.2
2,093,911	-		GFF2056	0.58	-1.8
2,093,911	-		GFF2056	0.58	+0.4
2,093,927	+		GFF2056	0.61	-0.9
2,093,930	-		GFF2056	0.62	-1.1
2,093,941	-		GFF2056	0.64	-0.9
2,093,953	-		GFF2056	0.66	-2.2
2,093,960	-		GFF2056	0.68	-1.4
2,093,965	+		GFF2056	0.69	-3.0
2,093,968	-		GFF2056	0.69	-1.7
2,093,983	+		GFF2056	0.72	-2.6
2,093,983	-		GFF2056	0.72	-1.3
2,093,988	+		GFF2056	0.73	-0.7
2,094,021	+		GFF2056	0.80	-2.2
2,094,029	-		GFF2056	0.81	-2.6
2,094,064	+		GFF2056	0.88	-0.3
2,094,068	+		GFF2056	0.89	-2.4
2,094,076	-				-2.6
2,094,076	-				-3.2
2,094,076	-				-2.4
2,094,076	-				-1.5
2,094,076	-				-2.9
2,094,096	+				-1.8
2,094,104	-				-0.9
2,094,165	+				+0.3
2,094,173	+				-0.2
2,094,173	+				-0.6
2,094,253	+				-2.6
2,094,253	+				-2.6
2,094,261	-				+0.0
2,094,261	-				-0.0