Strain Fitness in Sphingobium sp. HT1-2 around GFF2037

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,068,431	-		GFF2036	0.57	-1.0
2,068,432	+		GFF2036	0.57	-0.6
2,068,446	-		GFF2036	0.58	-0.0
2,068,454	+		GFF2036	0.58	-2.1
2,068,478	+		GFF2036	0.59	-0.3
2,068,498	+		GFF2036	0.60	-1.3
2,068,519	+		GFF2036	0.61	+1.0
2,068,519	+		GFF2036	0.61	-0.6
2,068,556	-		GFF2036	0.63	+1.7
2,068,592	+		GFF2036	0.65	-1.5
2,068,592	+		GFF2036	0.65	-2.1
2,068,592	+		GFF2036	0.65	-0.9
2,068,592	+		GFF2036	0.65	-0.3
2,068,592	+		GFF2036	0.65	-0.2
2,068,600	-		GFF2036	0.65	-1.0
2,068,611	+		GFF2036	0.66	-1.9
2,068,619	-		GFF2036	0.66	-1.0
2,068,650	-		GFF2036	0.67	+0.0
2,068,655	-		GFF2036	0.68	-0.8
2,068,657	+		GFF2036	0.68	+1.3
2,068,668	+		GFF2036	0.68	-1.3
2,068,689	+		GFF2036	0.69	-1.7
2,068,713	-		GFF2036	0.70	+0.8
2,068,715	+		GFF2036	0.70	-0.2
2,068,715	-		GFF2036	0.70	-0.9
2,068,720	+		GFF2036	0.71	-0.9
2,068,720	+		GFF2036	0.71	-0.7
2,068,723	-		GFF2036	0.71	+0.1
2,068,728	-		GFF2036	0.71	+0.8
2,068,728	-		GFF2036	0.71	-1.0
2,068,728	-		GFF2036	0.71	-0.0
2,068,728	-		GFF2036	0.71	-0.0
2,068,728	-		GFF2036	0.71	-1.7
2,068,741	+		GFF2036	0.72	-0.3
2,068,741	-		GFF2036	0.72	-2.0
2,068,754	-		GFF2036	0.72	-1.0
2,068,754	-		GFF2036	0.72	-1.4
2,068,759	+		GFF2036	0.72	-0.5
2,068,767	-		GFF2036	0.73	-0.2
2,068,767	-		GFF2036	0.73	-1.7
2,068,791	+		GFF2036	0.74	-3.0
2,068,796	+		GFF2036	0.74	-0.6
2,068,798	-		GFF2036	0.74	-1.5
2,068,801	+		GFF2036	0.74	+0.2
2,068,933	-		GFF2036	0.80	-1.0
2,069,047	-		GFF2036	0.86	+1.7
2,069,065	-		GFF2036	0.86	-1.4
2,069,072	-		GFF2036	0.87	-1.9
2,069,132	+		GFF2036	0.90	-1.8
2,069,155	+				-0.9
2,069,161	-				+0.4
2,069,161	-				-0.7
2,069,163	+				-0.1
2,069,168	+				-0.4
2,069,171	-				-1.0
2,069,199	+				-1.7
2,069,239	-				+0.1
2,069,256	-				-0.8
2,069,278	-				-1.5
2,069,292	-				+0.3
2,069,339	+				+0.0
2,069,352	-				-0.4
2,069,352	-				-1.5
2,069,369	-				-0.2
2,069,371	-				-0.1
2,069,371	-				-0.4
2,069,456	-				-0.5
2,069,472	+				-0.2
2,069,501	+				-0.0
2,069,502	+				+1.9
2,069,502	+				-0.2
2,069,509	-				-1.5
2,069,510	-				+1.2
2,069,539	-				-0.7
2,069,539	-				-0.4
2,069,560	-				-1.4
2,069,595	-				-0.9
2,069,597	-				+0.4
2,069,597	-				+0.9
2,069,676	+		GFF2037	0.11	-1.0
2,069,704	+		GFF2037	0.12	-0.3
2,069,704	+		GFF2037	0.12	-1.0
2,069,706	+		GFF2037	0.12	+0.7
2,069,712	-		GFF2037	0.13	-0.2
2,069,728	+		GFF2037	0.13	-1.6
2,069,728	+		GFF2037	0.13	+1.2
2,069,736	-		GFF2037	0.14	-2.6
2,069,736	-		GFF2037	0.14	+0.7
2,069,763	+		GFF2037	0.15	+0.6
2,069,771	-		GFF2037	0.15	-0.5
2,069,825	-		GFF2037	0.17	+1.0
2,069,859	+		GFF2037	0.19	+0.5
2,069,869	+		GFF2037	0.19	-2.5
2,069,877	-		GFF2037	0.19	-1.1
2,069,883	+		GFF2037	0.20	-1.6
2,069,891	-		GFF2037	0.20	-0.4
2,069,928	+		GFF2037	0.21	+0.5
2,069,929	-		GFF2037	0.21	-0.0
2,069,955	+		GFF2037	0.23	+0.3
2,069,962	-		GFF2037	0.23	-0.2
2,069,969	-		GFF2037	0.23	+0.9
2,069,969	-		GFF2037	0.23	-0.8
2,069,969	-		GFF2037	0.23	+0.8
2,069,980	-		GFF2037	0.24	+0.1
2,069,980	-		GFF2037	0.24	+0.4
2,069,980	-		GFF2037	0.24	+1.6
2,069,994	-		GFF2037	0.24	+1.6
2,069,994	-		GFF2037	0.24	-0.2
2,070,032	-		GFF2037	0.26	+0.8
2,070,039	+		GFF2037	0.26	-0.7
2,070,043	+		GFF2037	0.26	+1.9
2,070,076	+		GFF2037	0.27	-2.4
2,070,083	-		GFF2037	0.28	+0.3
2,070,098	-		GFF2037	0.28	-0.1
2,070,098	-		GFF2037	0.28	+1.3
2,070,098	-		GFF2037	0.28	-0.0
2,070,119	-		GFF2037	0.29	-1.6
2,070,124	-		GFF2037	0.29	+0.4
2,070,124	-		GFF2037	0.29	-0.1
2,070,139	+		GFF2037	0.30	-2.3
2,070,146	-		GFF2037	0.30	-0.8
2,070,147	+		GFF2037	0.30	+1.1
2,070,186	+		GFF2037	0.32	+0.8
2,070,279	+		GFF2037	0.36	+0.6
2,070,287	-		GFF2037	0.36	-0.5
2,070,287	-		GFF2037	0.36	-1.5
2,070,389	-		GFF2037	0.40	+0.5
2,070,389	-		GFF2037	0.40	+1.4
2,070,406	+		GFF2037	0.41	-0.4
2,070,414	-		GFF2037	0.41	-2.8
2,070,414	-		GFF2037	0.41	-0.2
2,070,414	-		GFF2037	0.41	-0.1
2,070,414	-		GFF2037	0.41	-0.3
2,070,432	+		GFF2037	0.42	+0.1
2,070,459	+		GFF2037	0.43	-0.9
2,070,465	+		GFF2037	0.43	+1.0
2,070,467	-		GFF2037	0.43	+1.0
2,070,467	-		GFF2037	0.43	-0.0
2,070,467	-		GFF2037	0.43	-0.5
2,070,467	-		GFF2037	0.43	-1.8
2,070,473	-		GFF2037	0.44	+0.9
2,070,486	+		GFF2037	0.44	-0.6
2,070,486	+		GFF2037	0.44	+0.2
2,070,492	+		GFF2037	0.44	+0.3
2,070,512	-		GFF2037	0.45	-0.8
2,070,532	-		GFF2037	0.46	+0.0
2,070,534	+		GFF2037	0.46	-0.3
2,070,536	+		GFF2037	0.46	-0.7
2,070,536	+		GFF2037	0.46	+0.7
2,070,536	+		GFF2037	0.46	+0.2
2,070,541	+		GFF2037	0.46	+1.6
2,070,544	-		GFF2037	0.46	+0.9
2,070,577	+		GFF2037	0.48	-1.7
2,070,578	+		GFF2037	0.48	-0.5
2,070,609	-		GFF2037	0.49	+0.7
2,070,656	-		GFF2037	0.51	-0.2
2,070,656	-		GFF2037	0.51	+0.3
2,070,656	-		GFF2037	0.51	+0.4
2,070,670	-		GFF2037	0.52	-0.4
2,070,673	-		GFF2037	0.52	-0.5
2,070,719	-		GFF2037	0.54	+1.3
2,070,766	+		GFF2037	0.55	-0.0
2,070,766	+		GFF2037	0.55	+0.0
2,070,766	+		GFF2037	0.55	+0.6
2,070,774	-		GFF2037	0.56	-0.3
2,070,774	-		GFF2037	0.56	+0.4
2,070,788	+		GFF2037	0.56	+0.1
2,070,788	+		GFF2037	0.56	+2.6
2,070,797	-		GFF2037	0.57	+1.1
2,070,836	+		GFF2037	0.58	+0.3
2,070,844	-		GFF2037	0.59	+0.2
2,070,875	-		GFF2037	0.60	+0.4
2,070,878	-		GFF2037	0.60	-0.9
2,070,893	+		GFF2037	0.61	+0.1
2,070,893	+		GFF2037	0.61	-0.7
2,070,901	-		GFF2037	0.61	+0.3
2,070,901	-		GFF2037	0.61	-0.3
2,070,952	-		GFF2037	0.63	-0.3
2,070,952	-		GFF2037	0.63	+0.0
2,071,028	-		GFF2037	0.66	+1.5
2,071,028	-		GFF2037	0.66	-0.6
2,071,051	+		GFF2037	0.67	-1.1
2,071,056	+		GFF2037	0.67	-1.4
2,071,064	-		GFF2037	0.68	+0.1
2,071,064	-		GFF2037	0.68	-0.8
2,071,094	-		GFF2037	0.69	+0.6
2,071,094	-		GFF2037	0.69	+0.7
2,071,113	-		GFF2037	0.70	-1.0
2,071,113	-		GFF2037	0.70	+0.5
2,071,125	+		GFF2037	0.70	+0.0
2,071,143	+		GFF2037	0.71	-0.6
2,071,143	+		GFF2037	0.71	-0.7
2,071,143	+		GFF2037	0.71	-0.4
2,071,143	+		GFF2037	0.71	-0.0
2,071,143	+		GFF2037	0.71	-0.3
2,071,143	+		GFF2037	0.71	-1.2
2,071,143	+		GFF2037	0.71	+0.1
2,071,143	+		GFF2037	0.71	-1.6
2,071,143	+		GFF2037	0.71	+0.1
2,071,143	+		GFF2037	0.71	-1.8
2,071,181	+		GFF2037	0.72	-0.7
2,071,225	+		GFF2037	0.74	-0.6
2,071,226	+		GFF2037	0.74	-0.0
2,071,236	+		GFF2037	0.74	+0.6
2,071,278	-		GFF2037	0.76	+0.1
2,071,290	-		GFF2037	0.77	-0.9
2,071,317	+		GFF2037	0.78	-1.3
2,071,325	-		GFF2037	0.78	-0.0
2,071,376	-		GFF2037	0.80	+0.4
2,071,405	+		GFF2037	0.81	+0.8
2,071,432	-		GFF2037	0.82	-0.4
2,071,435	+		GFF2037	0.83	-0.5
2,071,435	+		GFF2037	0.83	-0.1
2,071,439	-		GFF2037	0.83	-0.4
2,071,443	-		GFF2037	0.83	-0.1
2,071,445	-		GFF2037	0.83	-1.0
2,071,455	-		GFF2037	0.83	-2.0
2,071,455	-		GFF2037	0.83	-3.1
2,071,479	+		GFF2037	0.84	+0.9
2,071,487	-		GFF2037	0.85	-2.6
2,071,487	-		GFF2037	0.85	-0.3
2,071,492	-		GFF2037	0.85	-1.0
2,071,525	+		GFF2037	0.86	-0.2
2,071,553	-		GFF2037	0.87	+0.1
2,071,615	-		GFF2037	0.90	+0.1
2,071,629	+				-2.0
2,071,643	+				+1.1
2,071,658	+				+0.9
2,071,688	+				-0.1
2,071,719	-				+1.0
2,071,730	+				-1.5
2,071,843	+				+0.1
2,071,878	+				+0.8
2,071,878	+				+0.7
2,071,880	+				+1.2
2,071,886	-				-0.4
2,071,894	-				-0.7
2,071,901	+				-0.6
2,071,909	-				-1.0
2,071,921	-				-0.4
2,071,921	-				+0.5
2,071,921	-				+1.0
2,071,971	+				-0.3
2,071,971	+				+0.6
2,071,971	+				-1.0
2,071,979	-				+0.1
2,071,982	+				-0.1
2,071,982	+				+0.2
2,071,982	+				-0.9
2,071,982	+				-0.7
2,071,982	+				+0.6
2,071,982	+				+1.3
2,071,982	+				+0.2
2,071,990	-				-0.5
2,071,990	-				+0.5
2,071,990	-				-0.3
2,071,990	-				-0.5
2,072,054	+				+0.8
2,072,054	+				+0.1
2,072,056	-				-1.0
2,072,062	-				-0.6
2,072,062	-				-2.5
2,072,062	-				-0.1
2,072,062	-				+0.4
2,072,062	-				-1.7
2,072,075	+				+0.3
2,072,075	+				-0.4
2,072,075	+				+0.3
2,072,075	+				-0.2
2,072,083	-				-0.2
2,072,083	-				+0.5
2,072,083	-				-2.0
2,072,083	-				+1.6
2,072,083	-				-0.9
2,072,083	-				-0.2
2,072,083	-				-1.2
2,072,083	-				-0.0
2,072,083	-				-0.7
2,072,083	-				+1.7
2,072,083	-				-0.1
2,072,083	-				+0.0
2,072,108	-		GFF2038	0.10	-0.0
2,072,127	+		GFF2038	0.12	+1.4
2,072,127	+		GFF2038	0.12	+1.3
2,072,181	+		GFF2038	0.16	-2.3
2,072,184	-		GFF2038	0.17	+1.4
2,072,184	-		GFF2038	0.17	+0.4
2,072,197	+		GFF2038	0.18	+0.0
2,072,212	+		GFF2038	0.19	+1.0
2,072,236	+		GFF2038	0.21	-3.1
2,072,254	+		GFF2038	0.22	-1.4
2,072,254	+		GFF2038	0.22	-2.3
2,072,259	+		GFF2038	0.23	+0.3
2,072,259	+		GFF2038	0.23	-0.1
2,072,262	-		GFF2038	0.23	-3.3
2,072,267	-		GFF2038	0.23	-0.4
2,072,267	-		GFF2038	0.23	-0.7
2,072,275	-		GFF2038	0.24	+0.7
2,072,285	+		GFF2038	0.25	-0.8
2,072,293	-		GFF2038	0.26	+0.4
2,072,317	-		GFF2038	0.28	-1.5
2,072,324	-		GFF2038	0.28	-1.8
2,072,371	+		GFF2038	0.32	+1.1
2,072,380	+		GFF2038	0.33	-0.9
2,072,412	+		GFF2038	0.35	-0.6
2,072,420	-		GFF2038	0.36	-0.7
2,072,442	+		GFF2038	0.38	+0.1
2,072,471	-		GFF2038	0.40	+0.4
2,072,471	-		GFF2038	0.40	-0.6
2,072,478	-		GFF2038	0.41	-0.8
2,072,489	+		GFF2038	0.42	-0.2
2,072,497	-		GFF2038	0.43	+0.4
2,072,497	-		GFF2038	0.43	+0.3
2,072,514	-		GFF2038	0.44	-2.9
2,072,569	+		GFF2038	0.49	+0.3
2,072,605	-		GFF2038	0.51	-1.3
2,072,617	-		GFF2038	0.52	+0.3
2,072,665	+		GFF2038	0.56	+1.4
2,072,685	+		GFF2038	0.58	+0.7
2,072,748	+		GFF2038	0.63	+0.6
2,072,763	+		GFF2038	0.65	+1.3
2,072,765	+		GFF2038	0.65	+0.8
2,072,765	+		GFF2038	0.65	-1.2
2,072,765	+		GFF2038	0.65	-0.9
2,072,765	+		GFF2038	0.65	-0.2
2,072,765	+		GFF2038	0.65	-2.5
2,072,770	+		GFF2038	0.65	-1.2
2,072,775	+		GFF2038	0.66	+0.1
2,072,775	+		GFF2038	0.66	+0.5
2,072,775	+		GFF2038	0.66	+0.9
2,072,783	+		GFF2038	0.66	+0.5
2,072,783	+		GFF2038	0.66	-1.8
2,072,783	-		GFF2038	0.66	-0.4