Strain Fitness in Sphingobium sp. HT1-2 around GFF2006

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,026,709	-				+0.2
2,026,721	-				-1.0
2,026,726	+				-1.0
2,026,734	-				+0.3
2,026,734	-				-0.5
2,026,734	-				-1.1
2,026,734	-				-0.9
2,026,734	-				+1.4
2,026,734	-				-1.0
2,026,734	-				+0.8
2,026,734	-				-0.1
2,026,734	-				-2.2
2,026,734	-				-1.9
2,026,742	+				-0.1
2,026,747	+				+0.8
2,026,754	-		GFF2005	0.10	-0.3
2,026,779	-		GFF2005	0.13	+0.7
2,026,804	-		GFF2005	0.16	+0.9
2,026,883	+		GFF2005	0.24	-0.6
2,027,012	+		GFF2005	0.38	+0.1
2,027,031	+		GFF2005	0.40	-0.9
2,027,053	+		GFF2005	0.42	-0.8
2,027,142	-		GFF2005	0.52	+0.2
2,027,217	-		GFF2005	0.60	+0.4
2,027,217	-		GFF2005	0.60	+1.5
2,027,274	-		GFF2005	0.66	+0.3
2,027,338	+		GFF2005	0.72	+0.6
2,027,338	+		GFF2005	0.72	+0.3
2,027,346	-		GFF2005	0.73	+0.7
2,027,346	-		GFF2005	0.73	+2.0
2,027,346	-		GFF2005	0.73	+0.1
2,027,346	-		GFF2005	0.73	+0.6
2,027,346	-		GFF2005	0.73	-2.1
2,027,383	-		GFF2005	0.77	-0.2
2,027,429	+		GFF2005	0.82	-0.5
2,027,443	+		GFF2005	0.84	-0.2
2,027,452	+		GFF2005	0.85	-1.6
2,027,452	+		GFF2005	0.85	+1.2
2,027,452	+		GFF2005	0.85	-0.6
2,027,452	+		GFF2005	0.85	+0.6
2,027,465	-		GFF2005	0.86	-1.4
2,027,547	-				-0.2
2,027,547	-				-1.2
2,027,547	-				-0.9
2,027,583	-				+0.4
2,027,643	-				-0.5
2,027,666	+				-0.4
2,027,666	+				+1.8
2,027,674	-				-0.8
2,027,704	+				+1.6
2,027,709	+				+1.2
2,027,712	-				-0.3
2,027,712	-				-0.0
2,027,760	+				+0.5
2,027,768	-				-1.0
2,027,830	+		GFF2006	0.14	+0.7
2,027,840	+		GFF2006	0.16	-2.6
2,027,864	+		GFF2006	0.18	-1.0
2,027,877	-		GFF2006	0.19	-1.3
2,027,900	-		GFF2006	0.22	+0.9
2,027,938	+		GFF2006	0.26	-0.9
2,027,938	+		GFF2006	0.26	-0.0
2,027,939	-		GFF2006	0.26	-1.3
2,027,946	-		GFF2006	0.27	-0.5
2,027,999	+		GFF2006	0.32	+1.0
2,028,031	+		GFF2006	0.36	-0.0
2,028,074	-		GFF2006	0.40	-0.4
2,028,098	-		GFF2006	0.43	-0.5
2,028,103	-		GFF2006	0.44	-1.5
2,028,108	-		GFF2006	0.44	+0.6
2,028,113	-		GFF2006	0.45	+1.9
2,028,212	+		GFF2006	0.55	-1.0
2,028,212	+		GFF2006	0.55	-0.3
2,028,265	+		GFF2006	0.61	-0.9
2,028,265	+		GFF2006	0.61	+0.3
2,028,265	+		GFF2006	0.61	+0.3
2,028,265	+		GFF2006	0.61	+1.3
2,028,269	+		GFF2006	0.61	+1.0
2,028,273	-		GFF2006	0.62	-0.5
2,028,273	-		GFF2006	0.62	+1.3
2,028,508	-		GFF2006	0.87	+1.0
2,028,511	+		GFF2006	0.87	-0.0
2,028,516	+		GFF2006	0.88	-0.1
2,028,516	+		GFF2006	0.88	+1.0
2,028,539	-				-0.2
2,028,665	-				-1.3
2,028,686	-				+0.4
2,028,691	-				+1.2
2,028,715	+				-2.6
2,028,720	+				+0.2
2,028,738	-				-0.1
2,028,751	-				-1.1
2,028,776	+				-2.6
2,028,776	+				-1.2
2,028,791	+				-2.5
2,028,827	+				-3.3
2,028,829	+				-1.9
2,028,830	-				-2.4
2,028,834	+				-1.5
2,028,834	+				-2.4
2,028,835	-				-2.3
2,028,846	-				-3.0
2,028,880	+				-1.5
2,028,880	+				-1.0
2,028,881	+				-2.8
2,028,888	-				-2.7
2,028,904	+				-1.1
2,028,912	-				-0.7
2,028,958	-		GFF2007	0.11	-2.7
2,028,965	+		GFF2007	0.11	-2.2
2,028,965	+		GFF2007	0.11	-2.0
2,028,965	+		GFF2007	0.11	-3.1
2,028,973	-		GFF2007	0.12	-1.3
2,028,973	-		GFF2007	0.12	-3.0
2,028,973	-		GFF2007	0.12	-1.2
2,028,983	-		GFF2007	0.12	-2.1
2,029,015	-		GFF2007	0.14	-1.1
2,029,031	+		GFF2007	0.14	-0.5
2,029,038	-		GFF2007	0.15	-1.8
2,029,038	-		GFF2007	0.15	-3.0
2,029,047	-		GFF2007	0.15	-0.8
2,029,074	-		GFF2007	0.16	-0.4
2,029,112	+		GFF2007	0.18	-3.0
2,029,125	+		GFF2007	0.18	-2.2
2,029,125	+		GFF2007	0.18	-1.4
2,029,126	-		GFF2007	0.18	-1.0
2,029,126	-		GFF2007	0.18	-2.4
2,029,126	-		GFF2007	0.18	-2.2
2,029,126	-		GFF2007	0.18	-2.6
2,029,126	-		GFF2007	0.18	-2.7
2,029,133	-		GFF2007	0.19	-2.8
2,029,166	-		GFF2007	0.20	-0.9
2,029,166	-		GFF2007	0.20	-2.7
2,029,188	-		GFF2007	0.21	-2.9
2,029,190	-		GFF2007	0.21	-1.6
2,029,215	+		GFF2007	0.22	-3.3
2,029,215	+		GFF2007	0.22	-2.9
2,029,223	-		GFF2007	0.23	-1.5
2,029,223	-		GFF2007	0.23	-2.3
2,029,225	+		GFF2007	0.23	-2.8
2,029,227	-		GFF2007	0.23	-2.7
2,029,236	+		GFF2007	0.23	-1.4
2,029,250	+		GFF2007	0.24	-1.8
2,029,260	-		GFF2007	0.24	-2.8
2,029,277	+		GFF2007	0.25	-1.2
2,029,277	+		GFF2007	0.25	-2.3
2,029,277	+		GFF2007	0.25	-2.0
2,029,285	-		GFF2007	0.25	-3.9
2,029,285	-		GFF2007	0.25	-1.1
2,029,285	-		GFF2007	0.25	-2.8
2,029,307	-		GFF2007	0.26	-2.9
2,029,323	+		GFF2007	0.27	-1.3
2,029,323	+		GFF2007	0.27	-2.2
2,029,323	+		GFF2007	0.27	-1.2
2,029,323	+		GFF2007	0.27	-2.5
2,029,343	+		GFF2007	0.28	+1.3
2,029,343	+		GFF2007	0.28	-1.4
2,029,351	-		GFF2007	0.28	-3.5
2,029,351	-		GFF2007	0.28	-2.0
2,029,351	-		GFF2007	0.28	-2.9
2,029,388	-		GFF2007	0.30	-3.3
2,029,408	-		GFF2007	0.31	-3.4
2,029,413	+		GFF2007	0.31	-2.8
2,029,413	+		GFF2007	0.31	-4.4
2,029,413	+		GFF2007	0.31	-0.9
2,029,418	+		GFF2007	0.31	-2.1
2,029,418	+		GFF2007	0.31	-2.8
2,029,421	-		GFF2007	0.31	-3.5
2,029,421	-		GFF2007	0.31	-2.9
2,029,421	-		GFF2007	0.31	-0.0
2,029,421	-		GFF2007	0.31	-2.6
2,029,421	-		GFF2007	0.31	-2.0
2,029,421	-		GFF2007	0.31	-2.2
2,029,426	-		GFF2007	0.32	-2.8
2,029,426	-		GFF2007	0.32	-2.4
2,029,449	-		GFF2007	0.33	-1.2
2,029,484	+		GFF2007	0.34	-2.2
2,029,491	+		GFF2007	0.34	-2.8
2,029,494	+		GFF2007	0.35	-3.2
2,029,526	-		GFF2007	0.36	-2.4
2,029,557	+		GFF2007	0.37	-2.3
2,029,565	-		GFF2007	0.38	-1.8
2,029,565	-		GFF2007	0.38	-2.3
2,029,587	+		GFF2007	0.39	-3.9
2,029,608	+		GFF2007	0.40	-0.9
2,029,608	+		GFF2007	0.40	-1.0
2,029,616	-		GFF2007	0.40	-2.7
2,029,618	+		GFF2007	0.40	-0.5
2,029,618	+		GFF2007	0.40	-3.5
2,029,618	+		GFF2007	0.40	-2.7
2,029,618	+		GFF2007	0.40	-3.6