Strain Fitness in Sphingobium sp. HT1-2 around GFF1983

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,005,275	-				+0.4
2,005,282	-				-0.1
2,005,284	+				-1.7
2,005,284	+				+0.4
2,005,284	+				-1.0
2,005,295	+				+0.5
2,005,295	+				-0.9
2,005,303	-				-0.2
2,005,303	-				-2.0
2,005,303	-				+0.3
2,005,303	-				+0.8
2,005,303	-				+0.5
2,005,305	+				+1.2
2,005,313	-				+0.8
2,005,313	-				+0.2
2,005,314	-				+0.3
2,005,360	+		GFF1982	0.11	-0.6
2,005,360	+		GFF1982	0.11	+0.8
2,005,360	+		GFF1982	0.11	+0.3
2,005,363	-		GFF1982	0.11	+0.0
2,005,368	-		GFF1982	0.12	-0.1
2,005,368	-		GFF1982	0.12	+1.4
2,005,383	+		GFF1982	0.13	+0.2
2,005,388	+		GFF1982	0.14	+0.0
2,005,416	+		GFF1982	0.16	-1.8
2,005,424	-		GFF1982	0.17	-0.6
2,005,430	+		GFF1982	0.18	-0.2
2,005,430	+		GFF1982	0.18	+0.1
2,005,430	-		GFF1982	0.18	+0.2
2,005,458	+		GFF1982	0.21	+0.4
2,005,475	+		GFF1982	0.22	+0.8
2,005,539	+		GFF1982	0.29	+1.3
2,005,549	-		GFF1982	0.30	-1.1
2,005,558	-		GFF1982	0.31	+0.8
2,005,570	-		GFF1982	0.32	+1.5
2,005,576	+		GFF1982	0.32	-1.5
2,005,577	+		GFF1982	0.33	-0.2
2,005,581	+		GFF1982	0.33	-0.5
2,005,585	-		GFF1982	0.33	+0.7
2,005,585	-		GFF1982	0.33	+0.0
2,005,589	-		GFF1982	0.34	-1.9
2,005,628	+		GFF1982	0.38	-0.8
2,005,647	-		GFF1982	0.40	+0.5
2,005,648	-		GFF1982	0.40	+0.5
2,005,656	+		GFF1982	0.40	+0.4
2,005,707	+		GFF1982	0.46	-1.9
2,005,726	+		GFF1982	0.47	+0.8
2,005,726	-		GFF1982	0.47	+0.2
2,005,734	-		GFF1982	0.48	-0.6
2,005,741	-		GFF1982	0.49	+1.4
2,005,768	+		GFF1982	0.52	-0.1
2,005,771	-		GFF1982	0.52	+1.1
2,005,829	-		GFF1982	0.58	-0.3
2,005,861	-		GFF1982	0.61	+1.0
2,005,865	-		GFF1982	0.61	-0.9
2,005,866	-		GFF1982	0.61	-0.2
2,005,867	+		GFF1982	0.62	+0.4
2,005,869	+		GFF1982	0.62	+1.3
2,005,926	+		GFF1982	0.67	-2.2
2,005,964	-		GFF1982	0.71	+0.3
2,005,966	+		GFF1982	0.71	+0.3
2,005,974	-		GFF1982	0.72	-0.2
2,005,982	+		GFF1982	0.73	-0.7
2,005,987	-		GFF1982	0.74	+0.0
2,006,019	-		GFF1982	0.77	-2.4
2,006,168	-				+1.6
2,006,180	+				-0.1
2,006,188	-				+0.5
2,006,193	+				+0.6
2,006,201	-				-1.5
2,006,201	-				+1.0
2,006,203	+				+1.6
2,006,260	+				-0.3
2,006,266	+				-0.6
2,006,274	-				-0.5
2,006,276	+				-0.6
2,006,276	+				-0.2
2,006,276	+				-0.0
2,006,276	+				-0.2
2,006,276	+				-0.2
2,006,276	+				-0.0
2,006,276	+				-0.8
2,006,276	+				+0.9
2,006,276	+				-1.6
2,006,276	+				-0.0
2,006,276	+				-0.3
2,006,284	-				-0.3
2,006,284	-				-0.3
2,006,284	-				-0.0
2,006,284	-				-0.2
2,006,284	-				+0.3
2,006,284	-				-0.0
2,006,284	-				-1.1
2,006,288	+				-0.5
2,006,289	-				+0.3
2,006,306	-				-0.8
2,006,343	+				-0.9
2,006,343	+				+1.0
2,006,351	-				-0.6
2,006,360	+				+0.6
2,006,367	+				+0.6
2,006,388	+		GFF1983	0.12	-1.1
2,006,417	-		GFF1983	0.15	-0.1
2,006,417	-		GFF1983	0.15	-1.0
2,006,439	+		GFF1983	0.17	-0.3
2,006,439	+		GFF1983	0.17	+0.4
2,006,439	+		GFF1983	0.17	-1.3
2,006,445	-		GFF1983	0.18	+0.7
2,006,447	-		GFF1983	0.18	-0.6
2,006,447	-		GFF1983	0.18	+0.1
2,006,447	-		GFF1983	0.18	+1.4
2,006,447	-		GFF1983	0.18	+1.7
2,006,447	-		GFF1983	0.18	+0.3
2,006,447	-		GFF1983	0.18	+0.8
2,006,447	-		GFF1983	0.18	+0.6
2,006,447	-		GFF1983	0.18	-1.6
2,006,447	-		GFF1983	0.18	-1.7
2,006,477	+		GFF1983	0.21	+0.1
2,006,477	+		GFF1983	0.21	+0.6
2,006,477	+		GFF1983	0.21	+0.3
2,006,477	+		GFF1983	0.21	-1.7
2,006,477	+		GFF1983	0.21	-0.1
2,006,482	+		GFF1983	0.22	+0.3
2,006,485	-		GFF1983	0.22	-0.2
2,006,497	+		GFF1983	0.23	+1.5
2,006,515	+		GFF1983	0.25	-0.5
2,006,522	-		GFF1983	0.26	+0.7
2,006,524	+		GFF1983	0.26	-0.2
2,006,524	+		GFF1983	0.26	-0.4
2,006,524	+		GFF1983	0.26	+0.9
2,006,524	+		GFF1983	0.26	-1.8
2,006,524	+		GFF1983	0.26	-0.9
2,006,524	+		GFF1983	0.26	+0.3
2,006,532	-		GFF1983	0.27	+1.1
2,006,532	-		GFF1983	0.27	-1.4
2,006,532	-		GFF1983	0.27	+0.6
2,006,532	-		GFF1983	0.27	+1.2
2,006,534	+		GFF1983	0.27	+0.5
2,006,534	+		GFF1983	0.27	+1.1
2,006,534	+		GFF1983	0.27	+0.7
2,006,534	+		GFF1983	0.27	-1.2
2,006,534	+		GFF1983	0.27	+0.2
2,006,534	+		GFF1983	0.27	-1.4
2,006,534	+		GFF1983	0.27	+0.8
2,006,534	+		GFF1983	0.27	+0.1
2,006,534	+		GFF1983	0.27	-1.2
2,006,534	+		GFF1983	0.27	+2.1
2,006,534	+		GFF1983	0.27	-0.6
2,006,542	-		GFF1983	0.28	-2.1
2,006,542	-		GFF1983	0.28	+0.2
2,006,542	-		GFF1983	0.28	-1.2
2,006,542	-		GFF1983	0.28	-1.3
2,006,542	-		GFF1983	0.28	+1.7
2,006,542	-		GFF1983	0.28	+1.7
2,006,542	-		GFF1983	0.28	+0.5
2,006,542	-		GFF1983	0.28	-0.9
2,006,542	-		GFF1983	0.28	+0.4
2,006,542	-		GFF1983	0.28	-0.6
2,006,542	-		GFF1983	0.28	+0.2
2,006,544	+		GFF1983	0.28	-1.6
2,006,550	-		GFF1983	0.28	+0.2
2,006,559	+		GFF1983	0.29	-2.0
2,006,559	+		GFF1983	0.29	+0.4
2,006,559	+		GFF1983	0.29	+0.5
2,006,559	+		GFF1983	0.29	+0.0
2,006,559	+		GFF1983	0.29	-0.2
2,006,559	+		GFF1983	0.29	+1.2
2,006,559	+		GFF1983	0.29	-0.0
2,006,559	+		GFF1983	0.29	+0.9
2,006,559	+		GFF1983	0.29	-0.6
2,006,559	+		GFF1983	0.29	+1.2
2,006,559	+		GFF1983	0.29	+0.1
2,006,559	+		GFF1983	0.29	+0.4
2,006,559	+		GFF1983	0.29	+0.3
2,006,567	-		GFF1983	0.30	-0.1
2,006,567	-		GFF1983	0.30	-1.3
2,006,567	-		GFF1983	0.30	+0.7
2,006,567	-		GFF1983	0.30	-0.2
2,006,567	-		GFF1983	0.30	+0.4
2,006,567	-		GFF1983	0.30	+0.9
2,006,567	-		GFF1983	0.30	+1.3
2,006,567	-		GFF1983	0.30	+1.0
2,006,567	-		GFF1983	0.30	-0.2
2,006,567	-		GFF1983	0.30	-0.0
2,006,567	-		GFF1983	0.30	-0.2
2,006,569	+		GFF1983	0.30	+0.6
2,006,569	+		GFF1983	0.30	-0.3
2,006,574	+		GFF1983	0.31	-0.1
2,006,577	-		GFF1983	0.31	+0.2
2,006,577	-		GFF1983	0.31	+0.6
2,006,587	-		GFF1983	0.32	-3.3
2,006,607	+		GFF1983	0.34	+0.7
2,006,607	+		GFF1983	0.34	-0.5
2,006,609	-		GFF1983	0.34	+0.4
2,006,615	-		GFF1983	0.35	-0.2
2,006,615	-		GFF1983	0.35	+0.8
2,006,639	+		GFF1983	0.37	+0.9
2,006,674	+		GFF1983	0.41	-1.3
2,006,674	+		GFF1983	0.41	-1.8
2,006,674	+		GFF1983	0.41	-1.5
2,006,674	+		GFF1983	0.41	+0.9
2,006,674	+		GFF1983	0.41	-0.8
2,006,674	+		GFF1983	0.41	-1.5
2,006,674	+		GFF1983	0.41	-2.4
2,006,674	+		GFF1983	0.41	-0.8
2,006,679	+		GFF1983	0.41	-0.3
2,006,679	+		GFF1983	0.41	+0.1
2,006,682	-		GFF1983	0.42	-1.0
2,006,682	-		GFF1983	0.42	-1.3
2,006,682	-		GFF1983	0.42	+1.6
2,006,682	-		GFF1983	0.42	+0.7
2,006,682	-		GFF1983	0.42	-0.3
2,006,682	-		GFF1983	0.42	+0.7
2,006,687	-		GFF1983	0.42	-0.9
2,006,687	-		GFF1983	0.42	-0.9
2,006,687	-		GFF1983	0.42	-0.4
2,006,697	-		GFF1983	0.43	+1.4
2,006,707	-		GFF1983	0.44	-0.3
2,006,709	+		GFF1983	0.44	-1.0
2,006,714	+		GFF1983	0.45	-1.7
2,006,714	+		GFF1983	0.45	+0.3
2,006,717	-		GFF1983	0.45	-1.6
2,006,724	+		GFF1983	0.46	+2.2
2,006,732	-		GFF1983	0.47	-1.2
2,006,732	-		GFF1983	0.47	-0.3
2,006,733	-		GFF1983	0.47	-1.8
2,006,748	+		GFF1983	0.48	-0.5
2,006,751	+		GFF1983	0.49	-0.0
2,006,764	+		GFF1983	0.50	-0.4
2,006,764	+		GFF1983	0.50	-1.3
2,006,764	+		GFF1983	0.50	+0.2
2,006,772	+		GFF1983	0.51	-1.5
2,006,772	-		GFF1983	0.51	+0.1
2,006,821	+		GFF1983	0.56	-0.3
2,006,821	+		GFF1983	0.56	+0.2
2,006,821	+		GFF1983	0.56	+0.3
2,006,829	-		GFF1983	0.57	-2.1
2,006,829	-		GFF1983	0.57	+0.8
2,006,829	-		GFF1983	0.57	+1.0
2,006,834	+		GFF1983	0.57	-0.8
2,006,850	+		GFF1983	0.59	-1.3
2,006,861	+		GFF1983	0.60	-0.3
2,006,861	+		GFF1983	0.60	+0.4
2,006,861	+		GFF1983	0.60	-1.5
2,006,869	-		GFF1983	0.61	-2.1
2,006,874	-		GFF1983	0.61	+1.0
2,006,900	+		GFF1983	0.64	+0.6
2,006,900	+		GFF1983	0.64	-0.4
2,006,908	-		GFF1983	0.65	+2.0
2,006,908	-		GFF1983	0.65	+1.9
2,006,908	-		GFF1983	0.65	+1.0
2,006,908	-		GFF1983	0.65	-2.5
2,006,910	+		GFF1983	0.65	-1.6
2,006,913	-		GFF1983	0.65	-1.0
2,006,913	-		GFF1983	0.65	-0.5
2,006,916	+		GFF1983	0.65	+0.4
2,006,921	+		GFF1983	0.66	-0.2
2,006,921	+		GFF1983	0.66	+0.5
2,006,921	+		GFF1983	0.66	+0.1
2,006,921	+		GFF1983	0.66	-0.3
2,006,929	-		GFF1983	0.67	-1.6
2,006,929	-		GFF1983	0.67	-0.2
2,006,929	-		GFF1983	0.67	+0.2
2,006,929	-		GFF1983	0.67	+0.1
2,006,929	-		GFF1983	0.67	-0.2
2,006,929	-		GFF1983	0.67	-0.8
2,006,929	-		GFF1983	0.67	-0.5
2,006,939	-		GFF1983	0.68	+0.3
2,006,969	+		GFF1983	0.71	-0.7
2,006,977	-		GFF1983	0.72	-0.4
2,007,025	-		GFF1983	0.76	+0.1
2,007,027	+		GFF1983	0.77	-0.3
2,007,027	+		GFF1983	0.77	-1.5
2,007,027	+		GFF1983	0.77	-0.0
2,007,027	+		GFF1983	0.77	-1.1
2,007,027	+		GFF1983	0.77	+0.6
2,007,035	-		GFF1983	0.77	-0.7
2,007,036	-		GFF1983	0.77	+1.2
2,007,036	-		GFF1983	0.77	-1.5
2,007,047	+		GFF1983	0.79	-0.6
2,007,051	+		GFF1983	0.79	-0.8
2,007,059	-		GFF1983	0.80	-1.0
2,007,076	+		GFF1983	0.82	+0.9
2,007,076	+		GFF1983	0.82	-1.6
2,007,076	+		GFF1983	0.82	+0.8
2,007,083	+		GFF1983	0.82	-0.6
2,007,083	+		GFF1983	0.82	-0.2
2,007,083	+		GFF1983	0.82	-1.4
2,007,084	-		GFF1983	0.82	-0.5
2,007,091	-		GFF1983	0.83	+0.5
2,007,091	-		GFF1983	0.83	-1.5
2,007,091	-		GFF1983	0.83	+0.7
2,007,091	-		GFF1983	0.83	+0.9
2,007,091	-		GFF1983	0.83	+0.4
2,007,091	-		GFF1983	0.83	-1.6
2,007,091	-		GFF1983	0.83	-0.9
2,007,091	-		GFF1983	0.83	-0.1
2,007,091	-		GFF1983	0.83	-0.4
2,007,091	-		GFF1983	0.83	-0.6
2,007,104	+		GFF1983	0.84	-0.3
2,007,124	+		GFF1983	0.86	-0.6
2,007,126	+		GFF1983	0.87	-1.5
2,007,132	-		GFF1983	0.87	-0.8
2,007,132	-		GFF1983	0.87	-1.7
2,007,139	+		GFF1983	0.88	+0.2
2,007,191	-				+1.0
2,007,204	-				-1.0
2,007,224	-				-1.1
2,007,243	-				-0.5
2,007,274	+				+0.5
2,007,282	-				+0.6
2,007,282	-				-0.9
2,007,284	+				-1.0
2,007,294	-				+0.1
2,007,294	-				-1.4
2,007,294	-				+0.5
2,007,337	-				+1.1
2,007,360	-				-0.1
2,007,372	-				-0.4
2,007,397	-				-0.3
2,007,468	+		GFF1984	0.17	-1.3
2,007,476	-		GFF1984	0.19	-0.0
2,007,481	-		GFF1984	0.21	-0.7
2,007,481	-		GFF1984	0.21	+1.5
2,007,481	-		GFF1984	0.21	-0.4
2,007,584	-		GFF1984	0.45	+0.1
2,007,588	+		GFF1984	0.45	-0.5
2,007,625	+		GFF1984	0.54	-0.0
2,007,625	+		GFF1984	0.54	-1.5
2,007,643	+		GFF1984	0.58	+1.2
2,007,643	+		GFF1984	0.58	+1.4
2,007,643	+		GFF1984	0.58	+0.5
2,007,643	+		GFF1984	0.58	-1.3
2,007,643	+		GFF1984	0.58	-0.4
2,007,643	+		GFF1984	0.58	+0.1
2,007,643	+		GFF1984	0.58	-1.6
2,007,648	+		GFF1984	0.59	-0.9
2,007,651	-		GFF1984	0.60	-0.1
2,007,651	-		GFF1984	0.60	-1.4
2,007,651	-		GFF1984	0.60	+0.7
2,007,651	-		GFF1984	0.60	+1.2
2,007,651	-		GFF1984	0.60	-0.9
2,007,651	-		GFF1984	0.60	-1.7
2,007,661	-		GFF1984	0.62	+0.5
2,007,661	-		GFF1984	0.62	-0.6
2,007,681	+		GFF1984	0.67	-0.0
2,007,719	+		GFF1984	0.76	-0.1
2,007,727	+		GFF1984	0.78	+0.5
2,007,727	+		GFF1984	0.78	-0.4
2,007,735	-		GFF1984	0.80	+0.8
2,007,735	-		GFF1984	0.80	-1.2
2,007,735	-		GFF1984	0.80	-0.5
2,007,735	-		GFF1984	0.80	-0.3
2,007,742	-		GFF1984	0.81	+0.5
2,007,765	+		GFF1984	0.87	-2.4
2,007,765	+		GFF1984	0.87	+1.5
2,007,765	+		GFF1984	0.87	+0.3
2,007,765	+		GFF1984	0.87	+0.3
2,007,765	+		GFF1984	0.87	-0.3
2,007,765	+		GFF1984	0.87	-0.3
2,007,770	+		GFF1984	0.88	-0.4
2,007,770	+		GFF1984	0.88	-2.2
2,007,773	-		GFF1984	0.89	-1.5
2,007,773	-		GFF1984	0.89	-0.6
2,007,795	+				-0.3
2,007,795	+				+0.2
2,007,795	+				-1.7
2,007,795	+				-0.5
2,007,795	+				-1.2
2,007,795	+				+1.5
2,007,795	+				-1.0
2,007,795	+				-0.9
2,007,795	+				-0.2
2,007,795	+				+0.7
2,007,795	+				-0.7
2,007,795	+				-0.4
2,007,795	+				+1.8
2,007,795	+				+0.9
2,007,795	+				+0.7
2,007,800	+				-0.3
2,007,800	+				+0.4
2,007,803	-				+0.6
2,007,803	-				-0.4
2,007,803	-				-0.7
2,007,803	-				-2.3
2,007,803	-				-2.2
2,007,803	-				+0.1
2,007,803	-				-0.1
2,007,803	-				-1.1
2,007,803	-				-1.5
2,007,803	-				-0.5
2,007,803	-				-1.8
2,007,803	-				+1.5
2,007,803	-				-0.4
2,007,803	-				-0.6
2,007,803	-				+0.8
2,007,810	+				-0.9
2,007,818	-				+1.1
2,007,818	-				+0.1
2,007,823	-				+0.9
2,007,831	-				-1.1
2,007,878	+				+0.4
2,007,883	+				-0.7
2,007,891	-				+0.1
2,007,891	-				+0.8
2,007,901	-				+0.7
2,007,911	-				-1.7
2,007,913	+				+1.2
2,007,922	+				-0.1
2,007,930	-		GFF1985	0.12	-1.8
2,007,953	+		GFF1985	0.19	+0.2
2,007,954	-		GFF1985	0.19	-0.7
2,007,956	-		GFF1985	0.19	+1.3
2,007,964	-		GFF1985	0.22	-2.1
2,007,973	+		GFF1985	0.24	-0.0
2,007,975	+		GFF1985	0.25	-0.1
2,007,975	+		GFF1985	0.25	-0.8
2,007,975	+		GFF1985	0.25	+0.4
2,007,975	+		GFF1985	0.25	+0.2
2,007,975	-		GFF1985	0.25	-1.8
2,007,981	-		GFF1985	0.27	+0.9
2,007,983	-		GFF1985	0.27	+0.9
2,007,983	-		GFF1985	0.27	+0.3
2,007,983	-		GFF1985	0.27	-0.4
2,008,020	+		GFF1985	0.38	-0.4
2,008,020	+		GFF1985	0.38	+0.5
2,008,028	-		GFF1985	0.41	-0.3
2,008,033	-		GFF1985	0.42	+0.9
2,008,033	-		GFF1985	0.42	-1.5
2,008,048	+		GFF1985	0.47	-0.5
2,008,058	+		GFF1985	0.50	-1.6
2,008,066	-		GFF1985	0.52	-0.0
2,008,094	+		GFF1985	0.60	-1.1
2,008,137	-		GFF1985	0.73	-1.2
2,008,158	+		GFF1985	0.79	-1.6
2,008,163	+		GFF1985	0.81	-0.4
2,008,166	-		GFF1985	0.81	-1.7
2,008,168	+		GFF1985	0.82	+1.3
2,008,170	+		GFF1985	0.83	-1.2
2,008,178	-		GFF1985	0.85	+0.4
2,008,180	+		GFF1985	0.86	+0.8
2,008,194	+		GFF1985	0.90	-1.3
2,008,195	+				-1.1
2,008,207	-				+1.2
2,008,219	-				+0.1