Strain Fitness in Sphingobium sp. HT1-2 around GFF1978

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,999,655	+		GFF1976	0.55	-0.2
1,999,661	+		GFF1976	0.56	-0.0
1,999,683	+		GFF1976	0.58	+0.3
1,999,683	+		GFF1976	0.58	-0.7
1,999,683	+		GFF1976	0.58	+0.4
1,999,683	+		GFF1976	0.58	+0.8
1,999,691	-		GFF1976	0.59	-0.6
1,999,691	-		GFF1976	0.59	+0.8
1,999,691	-		GFF1976	0.59	-0.4
1,999,691	-		GFF1976	0.59	+0.3
1,999,694	+		GFF1976	0.60	+0.0
1,999,694	+		GFF1976	0.60	-1.5
1,999,694	+		GFF1976	0.60	-1.7
1,999,694	+		GFF1976	0.60	-0.4
1,999,694	+		GFF1976	0.60	-0.8
1,999,700	+		GFF1976	0.60	+0.5
1,999,700	-		GFF1976	0.60	-0.6
1,999,708	-		GFF1976	0.61	-0.8
1,999,716	+		GFF1976	0.62	+0.2
1,999,716	+		GFF1976	0.62	+0.0
1,999,716	+		GFF1976	0.62	+0.9
1,999,716	+		GFF1976	0.62	-1.2
1,999,718	-		GFF1976	0.62	-0.9
1,999,724	+		GFF1976	0.63	-0.4
1,999,724	+		GFF1976	0.63	-2.0
1,999,724	+		GFF1976	0.63	+0.1
1,999,724	-		GFF1976	0.63	-0.6
1,999,726	+		GFF1976	0.63	+1.0
1,999,730	-		GFF1976	0.63	+0.4
1,999,732	-		GFF1976	0.64	-0.4
1,999,732	-		GFF1976	0.64	+0.3
1,999,732	-		GFF1976	0.64	-0.6
1,999,732	-		GFF1976	0.64	-0.2
1,999,734	-		GFF1976	0.64	-1.3
1,999,821	+		GFF1976	0.73	-0.3
1,999,829	+		GFF1976	0.74	-0.8
1,999,832	-		GFF1976	0.74	+0.2
1,999,839	+		GFF1976	0.75	-1.4
1,999,847	-		GFF1976	0.76	-0.4
1,999,847	-		GFF1976	0.76	-0.6
1,999,848	+		GFF1976	0.76	-0.2
1,999,848	+		GFF1976	0.76	-0.3
1,999,856	-		GFF1976	0.77	-1.6
1,999,856	-		GFF1976	0.77	-1.4
1,999,856	-		GFF1976	0.77	+0.2
1,999,856	-		GFF1976	0.77	-0.7
1,999,861	-		GFF1976	0.77	+0.2
1,999,865	+		GFF1976	0.77	-1.2
1,999,865	+		GFF1976	0.77	-0.4
1,999,866	-		GFF1976	0.78	+0.2
1,999,871	-		GFF1976	0.78	+0.6
1,999,873	-		GFF1976	0.78	+1.5
1,999,873	-		GFF1976	0.78	-1.2
1,999,873	-		GFF1976	0.78	-0.7
1,999,878	+		GFF1976	0.79	-0.5
1,999,878	-		GFF1976	0.79	-0.1
1,999,878	-		GFF1976	0.79	+0.2
1,999,891	-		GFF1976	0.80	-0.2
1,999,896	+		GFF1976	0.81	+0.8
1,999,943	-		GFF1976	0.86	+0.4
1,999,988	-				-0.5
1,999,998	-				+0.6
2,000,024	+				+0.9
2,000,032	-				+0.0
2,000,032	-				-0.9
2,000,043	+				+0.5
2,000,043	+				+0.1
2,000,051	-				+0.9
2,000,051	-				+0.3
2,000,088	-				-0.3
2,000,094	-				+0.9
2,000,103	+				-0.5
2,000,103	+				-1.7
2,000,111	+				+0.8
2,000,111	-				-1.4
2,000,111	-				-0.5
2,000,111	-				-0.1
2,000,117	+				+0.2
2,000,118	+				-0.2
2,000,130	+				-0.1
2,000,132	-				-2.1
2,000,132	-				-1.5
2,000,160	+				-0.4
2,000,165	+				+1.5
2,000,172	+				+0.5
2,000,190	-		GFF1977	0.13	+0.2
2,000,195	+		GFF1977	0.14	-0.2
2,000,196	+		GFF1977	0.14	-0.3
2,000,204	-		GFF1977	0.16	+0.2
2,000,220	+		GFF1977	0.19	-1.1
2,000,223	-		GFF1977	0.20	+0.4
2,000,223	-		GFF1977	0.20	-2.6
2,000,239	+		GFF1977	0.23	-1.2
2,000,257	-		GFF1977	0.27	-1.6
2,000,258	+		GFF1977	0.27	+0.5
2,000,262	-		GFF1977	0.28	-0.7
2,000,271	-		GFF1977	0.30	-1.1
2,000,285	+		GFF1977	0.33	+0.2
2,000,287	+		GFF1977	0.33	+0.6
2,000,292	+		GFF1977	0.34	+0.2
2,000,296	+		GFF1977	0.35	-0.2
2,000,296	+		GFF1977	0.35	-0.3
2,000,303	+		GFF1977	0.37	-0.2
2,000,311	-		GFF1977	0.38	+0.3
2,000,311	-		GFF1977	0.38	+0.3
2,000,322	+		GFF1977	0.41	+0.4
2,000,324	+		GFF1977	0.41	+0.9
2,000,324	+		GFF1977	0.41	+1.6
2,000,331	+		GFF1977	0.43	+0.7
2,000,339	-		GFF1977	0.44	-0.6
2,000,361	-		GFF1977	0.49	+0.5
2,000,390	-		GFF1977	0.55	-1.5
2,000,390	-		GFF1977	0.55	-0.0
2,000,390	-		GFF1977	0.55	+0.8
2,000,400	-		GFF1977	0.57	+0.6
2,000,405	+		GFF1977	0.58	+0.7
2,000,429	+		GFF1977	0.63	-0.6
2,000,429	+		GFF1977	0.63	+0.4
2,000,429	+		GFF1977	0.63	-1.0
2,000,429	+		GFF1977	0.63	+0.6
2,000,432	-		GFF1977	0.64	+0.0
2,000,437	-		GFF1977	0.65	-0.7
2,000,437	-		GFF1977	0.65	+0.1
2,000,437	-		GFF1977	0.65	-0.2
2,000,437	-		GFF1977	0.65	+0.7
2,000,449	+		GFF1977	0.68	-1.2
2,000,468	+		GFF1977	0.72	+0.6
2,000,474	-		GFF1977	0.73	+0.9
2,000,484	+		GFF1977	0.75	-2.7
2,000,513	-		GFF1977	0.81	-0.3
2,000,522	+		GFF1977	0.83	-0.2
2,000,531	-		GFF1977	0.85	+0.0
2,000,537	+		GFF1977	0.86	-1.2
2,000,569	-				-2.0
2,000,583	+				-1.3
2,000,583	+				+0.2
2,000,613	+				-1.8
2,000,613	+				-1.6
2,000,613	+				-1.3
2,000,613	+				-2.4
2,000,613	+				+0.4
2,000,613	+				-0.6
2,000,621	-				-1.3
2,000,638	-				-1.0
2,000,685	-				-1.3
2,000,692	+				-0.6
2,000,694	+				-2.6
2,000,706	+				-0.5
2,000,706	+				-2.1
2,000,706	+				-0.3
2,000,706	+				+1.2
2,000,712	-				-0.9
2,000,714	-				+0.5
2,000,714	-				-0.4
2,000,714	-				-0.4
2,000,739	-				-0.0
2,000,758	-		GFF1978	0.10	-0.8
2,000,758	-		GFF1978	0.10	+0.7
2,000,763	-		GFF1978	0.11	-0.9
2,000,779	-		GFF1978	0.12	-1.5
2,000,809	+		GFF1978	0.15	+1.2
2,000,817	-		GFF1978	0.16	-0.8
2,000,829	+		GFF1978	0.17	-2.2
2,000,829	+		GFF1978	0.17	-0.2
2,000,829	+		GFF1978	0.17	-0.2
2,000,834	+		GFF1978	0.18	-0.4
2,000,837	-		GFF1978	0.18	+0.7
2,000,837	-		GFF1978	0.18	+0.3
2,000,837	-		GFF1978	0.18	-0.3
2,000,850	+		GFF1978	0.19	+0.3
2,000,868	+		GFF1978	0.21	-0.2
2,000,871	-		GFF1978	0.21	-1.2
2,000,876	+		GFF1978	0.22	-0.3
2,000,876	+		GFF1978	0.22	+0.0
2,000,881	+		GFF1978	0.22	+0.7
2,000,884	-		GFF1978	0.23	-0.7
2,000,884	-		GFF1978	0.23	-0.7
2,000,889	-		GFF1978	0.23	-0.1
2,000,889	-		GFF1978	0.23	-1.2
2,000,889	-		GFF1978	0.23	-1.2
2,000,906	+		GFF1978	0.25	-0.8
2,000,906	+		GFF1978	0.25	-0.2
2,000,925	+		GFF1978	0.27	-0.4
2,000,928	-		GFF1978	0.27	+0.1
2,000,933	-		GFF1978	0.28	+0.0
2,000,933	-		GFF1978	0.28	+0.6
2,000,937	+		GFF1978	0.28	+0.7
2,000,939	+		GFF1978	0.28	+1.1
2,000,974	+		GFF1978	0.32	-0.2
2,000,974	+		GFF1978	0.32	-0.3
2,000,982	-		GFF1978	0.32	-0.4
2,000,989	+		GFF1978	0.33	-0.6
2,000,994	+		GFF1978	0.34	+0.2
2,001,030	+		GFF1978	0.37	-1.2
2,001,031	-		GFF1978	0.37	-1.2
2,001,045	+		GFF1978	0.39	-1.1
2,001,045	+		GFF1978	0.39	+0.1
2,001,058	+		GFF1978	0.40	+0.7
2,001,092	-		GFF1978	0.43	-0.1
2,001,093	+		GFF1978	0.43	+1.2
2,001,096	-		GFF1978	0.44	-0.5
2,001,105	+		GFF1978	0.44	+0.1
2,001,111	+		GFF1978	0.45	-0.2
2,001,111	+		GFF1978	0.45	+0.8
2,001,113	-		GFF1978	0.45	-0.3
2,001,119	-		GFF1978	0.46	-0.5
2,001,119	-		GFF1978	0.46	-0.9
2,001,121	+		GFF1978	0.46	+0.2
2,001,121	+		GFF1978	0.46	-0.4
2,001,123	-		GFF1978	0.46	-0.1
2,001,124	-		GFF1978	0.46	+0.5
2,001,129	-		GFF1978	0.47	-0.8
2,001,139	-		GFF1978	0.48	+0.7
2,001,139	-		GFF1978	0.48	-1.2
2,001,157	+		GFF1978	0.50	+1.4
2,001,157	+		GFF1978	0.50	-0.6
2,001,165	-		GFF1978	0.50	+0.5
2,001,184	-		GFF1978	0.52	+0.1
2,001,184	-		GFF1978	0.52	+0.5
2,001,201	+		GFF1978	0.54	-1.0
2,001,201	+		GFF1978	0.54	+0.4
2,001,201	+		GFF1978	0.54	-1.8
2,001,201	+		GFF1978	0.54	-1.0
2,001,201	+		GFF1978	0.54	-0.6
2,001,201	+		GFF1978	0.54	+0.1
2,001,201	+		GFF1978	0.54	-1.6
2,001,201	+		GFF1978	0.54	+0.2
2,001,201	+		GFF1978	0.54	+0.1
2,001,201	+		GFF1978	0.54	-1.6
2,001,209	-		GFF1978	0.55	+1.0
2,001,209	-		GFF1978	0.55	-0.9
2,001,209	-		GFF1978	0.55	-0.4
2,001,228	+		GFF1978	0.57	-0.2
2,001,243	-		GFF1978	0.58	+0.2
2,001,248	+		GFF1978	0.59	+0.9
2,001,248	+		GFF1978	0.59	+0.3
2,001,248	+		GFF1978	0.59	-1.1
2,001,248	+		GFF1978	0.59	+0.0
2,001,256	-		GFF1978	0.59	-0.3
2,001,256	-		GFF1978	0.59	-0.9
2,001,256	-		GFF1978	0.59	+0.2
2,001,256	-		GFF1978	0.59	+0.8
2,001,256	-		GFF1978	0.59	-0.2
2,001,256	-		GFF1978	0.59	-1.4
2,001,256	-		GFF1978	0.59	+0.1
2,001,261	-		GFF1978	0.60	-1.5
2,001,265	+		GFF1978	0.60	+0.7
2,001,266	+		GFF1978	0.60	-0.3
2,001,310	+		GFF1978	0.65	-0.3
2,001,318	-		GFF1978	0.65	-1.3
2,001,331	+		GFF1978	0.67	+0.4
2,001,370	+		GFF1978	0.71	-0.2
2,001,371	-		GFF1978	0.71	-3.6
2,001,371	-		GFF1978	0.71	+0.7
2,001,382	-		GFF1978	0.72	+0.3
2,001,396	+		GFF1978	0.73	+1.2
2,001,403	-		GFF1978	0.74	+0.2
2,001,404	-		GFF1978	0.74	+0.1
2,001,451	+		GFF1978	0.79	+0.3
2,001,477	+		GFF1978	0.81	-0.7
2,001,477	+		GFF1978	0.81	+0.6
2,001,489	-		GFF1978	0.82	+0.9
2,001,517	+		GFF1978	0.85	+0.1
2,001,517	+		GFF1978	0.85	-1.1
2,001,517	+		GFF1978	0.85	-1.0
2,001,596	+				+0.4
2,001,598	+				+0.4
2,001,605	+				-1.7
2,001,638	-				-0.2
2,001,638	-				+0.3
2,001,638	-				-0.6
2,001,638	-				+1.0
2,001,638	-				+0.8
2,001,638	-				-0.2
2,001,638	-				-0.2
2,001,668	+				-0.1
2,001,676	-				-1.2
2,001,676	-				-0.2
2,001,681	-				-0.1
2,001,686	-				-0.5
2,001,695	+				+0.3
2,001,695	+				-0.8
2,001,695	+				-0.3
2,001,703	-				-2.1
2,001,703	-				+0.7
2,001,724	-				-0.3
2,001,733	+				+0.5
2,001,738	+				+0.5
2,001,741	-				-0.2
2,001,741	-				-0.3
2,001,741	-				+1.2
2,001,741	-				-0.0
2,001,776	+				+0.8
2,001,776	+				+1.4
2,001,776	+				+0.4
2,001,776	+				+1.1
2,001,784	-				-1.1
2,001,784	-				-2.2
2,001,784	-				+0.3
2,001,784	-				+0.5
2,001,784	-				+0.6
2,001,784	-				+0.0
2,001,784	-				-0.6
2,001,784	-				-1.0
2,001,796	-				-0.4
2,001,798	+				-0.4
2,001,798	+				+0.3
2,001,798	+				-0.7
2,001,798	+				-0.4
2,001,803	+				-0.3
2,001,803	+				+0.7
2,001,803	+				+0.4
2,001,803	+				-1.2
2,001,806	-				+0.4
2,001,806	-				-1.4
2,001,806	-				+0.3
2,001,806	-				-0.2
2,001,806	-				-1.0
2,001,806	-				+0.3
2,001,811	-				-1.3
2,001,811	-				+0.5
2,001,811	-				+1.2
2,001,811	-				-2.2
2,001,840	+		GFF1979	0.11	-0.3
2,001,848	-		GFF1979	0.12	-0.6
2,001,854	+		GFF1979	0.12	+0.6
2,001,868	-		GFF1979	0.13	+0.4
2,001,884	+		GFF1979	0.14	-1.1
2,001,908	-		GFF1979	0.15	-0.3
2,001,913	+		GFF1979	0.16	-1.7
2,001,913	+		GFF1979	0.16	-1.4
2,001,921	-		GFF1979	0.16	-1.3
2,001,937	+		GFF1979	0.17	+0.2
2,001,948	+		GFF1979	0.18	+0.2
2,001,980	+		GFF1979	0.20	-1.3
2,001,995	+		GFF1979	0.21	+0.8
2,001,995	-		GFF1979	0.21	+0.9
2,001,995	-		GFF1979	0.21	-0.5
2,002,005	+		GFF1979	0.22	-0.2
2,002,005	+		GFF1979	0.22	-1.5
2,002,005	+		GFF1979	0.22	+0.1
2,002,013	-		GFF1979	0.22	+0.5
2,002,020	+		GFF1979	0.23	-1.1
2,002,028	-		GFF1979	0.23	-0.2
2,002,049	-		GFF1979	0.24	-0.4
2,002,098	+		GFF1979	0.28	-0.8
2,002,098	+		GFF1979	0.28	-1.1
2,002,104	-		GFF1979	0.28	-1.1
2,002,122	+		GFF1979	0.29	+0.1
2,002,154	+		GFF1979	0.31	+0.6
2,002,155	+		GFF1979	0.31	+0.6
2,002,155	+		GFF1979	0.31	-1.9
2,002,155	+		GFF1979	0.31	-0.5
2,002,155	+		GFF1979	0.31	+0.4
2,002,155	+		GFF1979	0.31	-0.8
2,002,157	-		GFF1979	0.31	-0.1
2,002,157	-		GFF1979	0.31	+1.5
2,002,163	-		GFF1979	0.32	+0.8
2,002,163	-		GFF1979	0.32	-0.5
2,002,163	-		GFF1979	0.32	-0.2
2,002,175	+		GFF1979	0.33	+0.2
2,002,199	+		GFF1979	0.34	-1.3
2,002,202	-		GFF1979	0.34	-0.8
2,002,207	-		GFF1979	0.35	-0.2
2,002,210	-		GFF1979	0.35	+0.5
2,002,228	-		GFF1979	0.36	+0.2
2,002,240	-		GFF1979	0.37	-0.9
2,002,240	-		GFF1979	0.37	+0.7
2,002,266	-		GFF1979	0.38	+0.2
2,002,271	+		GFF1979	0.39	-0.4
2,002,296	+		GFF1979	0.40	-2.0
2,002,304	-		GFF1979	0.41	-0.6
2,002,327	-		GFF1979	0.42	-0.2
2,002,344	+		GFF1979	0.43	-0.1
2,002,348	-		GFF1979	0.44	+1.9
2,002,350	+		GFF1979	0.44	-0.6
2,002,350	+		GFF1979	0.44	+0.2
2,002,350	+		GFF1979	0.44	-2.5
2,002,352	-		GFF1979	0.44	+0.0
2,002,358	-		GFF1979	0.44	+0.4
2,002,358	-		GFF1979	0.44	-0.8
2,002,390	+		GFF1979	0.46	-1.8
2,002,408	+		GFF1979	0.48	-0.3
2,002,420	+		GFF1979	0.48	+0.2
2,002,433	+		GFF1979	0.49	+0.3
2,002,435	+		GFF1979	0.49	-0.3
2,002,439	-		GFF1979	0.50	+0.8
2,002,439	-		GFF1979	0.50	-0.9
2,002,443	-		GFF1979	0.50	+0.2
2,002,450	+		GFF1979	0.50	-0.1
2,002,458	-		GFF1979	0.51	-0.2
2,002,458	-		GFF1979	0.51	-0.4
2,002,485	+		GFF1979	0.53	+0.8
2,002,485	-		GFF1979	0.53	-0.9
2,002,493	-		GFF1979	0.53	-1.7
2,002,522	+		GFF1979	0.55	-1.1
2,002,522	+		GFF1979	0.55	-0.4
2,002,530	-		GFF1979	0.55	-0.2
2,002,531	+		GFF1979	0.55	-1.1
2,002,532	+		GFF1979	0.56	-0.9
2,002,535	+		GFF1979	0.56	-1.8
2,002,584	+		GFF1979	0.59	-0.9
2,002,589	+		GFF1979	0.59	-1.6
2,002,597	-		GFF1979	0.60	-0.6
2,002,607	-		GFF1979	0.60	+1.4
2,002,627	-		GFF1979	0.62	-1.4
2,002,628	+		GFF1979	0.62	+1.2
2,002,632	-		GFF1979	0.62	+0.1
2,002,632	-		GFF1979	0.62	-0.6
2,002,637	-		GFF1979	0.62	-1.3
2,002,653	+		GFF1979	0.63	+1.0
2,002,658	+		GFF1979	0.64	-1.2
2,002,658	+		GFF1979	0.64	+0.3
2,002,661	-		GFF1979	0.64	+1.0