Strain Fitness in Sphingobium sp. HT1-2 around GFF1938

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1937 and GFF1938 are separated by 127 nucleotidesGFF1938 and GFF1939 are separated by 108 nucleotides GFF1937 - hypothetical protein, at 1,962,136 to 1,964,064 GFF1937 GFF1938 - Cell division protein FtsZ, at 1,964,192 to 1,965,658 GFF1938 GFF1939 - Cell division protein FtsA, at 1,965,767 to 1,967,050 GFF1939 Position (kb) 1964 1965 1966Strain fitness (log2 ratio) -2 -1 0 1at 1963.198 kb on - strand, within GFF1937at 1963.229 kb on - strand, within GFF1937at 1963.259 kb on - strand, within GFF1937at 1963.259 kb on - strand, within GFF1937at 1963.289 kb on + strand, within GFF1937at 1963.302 kb on - strand, within GFF1937at 1963.308 kb on + strand, within GFF1937at 1963.308 kb on + strand, within GFF1937at 1963.308 kb on + strand, within GFF1937at 1963.316 kb on - strand, within GFF1937at 1963.316 kb on - strand, within GFF1937at 1963.316 kb on - strand, within GFF1937at 1963.316 kb on - strand, within GFF1937at 1963.316 kb on - strand, within GFF1937at 1963.364 kb on - strand, within GFF1937at 1963.366 kb on - strand, within GFF1937at 1963.376 kb on + strand, within GFF1937at 1963.380 kb on + strand, within GFF1937at 1963.412 kb on + strand, within GFF1937at 1963.430 kb on + strand, within GFF1937at 1963.430 kb on + strand, within GFF1937at 1963.438 kb on - strand, within GFF1937at 1963.438 kb on - strand, within GFF1937at 1963.449 kb on - strand, within GFF1937at 1963.493 kb on + strand, within GFF1937at 1963.493 kb on - strand, within GFF1937at 1963.499 kb on - strand, within GFF1937at 1963.528 kb on - strand, within GFF1937at 1963.528 kb on - strand, within GFF1937at 1963.528 kb on - strand, within GFF1937at 1963.528 kb on - strand, within GFF1937at 1963.528 kb on - strand, within GFF1937at 1963.531 kb on - strand, within GFF1937at 1963.537 kb on + strand, within GFF1937at 1963.556 kb on + strand, within GFF1937at 1963.556 kb on + strand, within GFF1937at 1963.564 kb on - strand, within GFF1937at 1963.564 kb on - strand, within GFF1937at 1963.564 kb on - strand, within GFF1937at 1963.566 kb on + strand, within GFF1937at 1963.605 kb on + strand, within GFF1937at 1963.605 kb on + strand, within GFF1937at 1963.605 kb on + strand, within GFF1937at 1963.613 kb on - strand, within GFF1937at 1963.614 kb on + strand, within GFF1937at 1963.614 kb on + strand, within GFF1937at 1963.614 kb on + strand, within GFF1937at 1963.614 kb on + strand, within GFF1937at 1963.622 kb on + strand, within GFF1937at 1963.622 kb on - strand, within GFF1937at 1963.622 kb on - strand, within GFF1937at 1963.622 kb on - strand, within GFF1937at 1963.622 kb on - strand, within GFF1937at 1963.627 kb on + strand, within GFF1937at 1963.630 kb on - strand, within GFF1937at 1963.632 kb on - strand, within GFF1937at 1963.655 kb on + strand, within GFF1937at 1963.655 kb on + strand, within GFF1937at 1963.663 kb on - strand, within GFF1937at 1963.663 kb on - strand, within GFF1937at 1963.663 kb on - strand, within GFF1937at 1963.663 kb on - strand, within GFF1937at 1963.663 kb on - strand, within GFF1937at 1963.665 kb on + strand, within GFF1937at 1963.681 kb on - strand, within GFF1937at 1963.689 kb on + strand, within GFF1937at 1963.697 kb on - strand, within GFF1937at 1963.697 kb on - strand, within GFF1937at 1963.697 kb on - strand, within GFF1937at 1963.697 kb on - strand, within GFF1937at 1963.697 kb on - strand, within GFF1937at 1963.698 kb on + strand, within GFF1937at 1963.699 kb on + strand, within GFF1937at 1963.700 kb on + strand, within GFF1937at 1963.700 kb on + strand, within GFF1937at 1963.702 kb on - strand, within GFF1937at 1963.706 kb on - strand, within GFF1937at 1963.719 kb on - strand, within GFF1937at 1963.721 kb on - strand, within GFF1937at 1963.758 kb on - strand, within GFF1937at 1963.787 kb on + strand, within GFF1937at 1963.790 kb on - strand, within GFF1937at 1963.792 kb on + strand, within GFF1937at 1963.792 kb on + strand, within GFF1937at 1963.792 kb on + strand, within GFF1937at 1963.795 kb on - strand, within GFF1937at 1963.800 kb on - strand, within GFF1937at 1963.800 kb on - strand, within GFF1937at 1963.800 kb on - strand, within GFF1937at 1963.800 kb on - strand, within GFF1937at 1963.800 kb on - strand, within GFF1937at 1963.800 kb on - strand, within GFF1937at 1963.802 kb on + strand, within GFF1937at 1963.802 kb on + strand, within GFF1937at 1963.804 kb on - strand, within GFF1937at 1963.810 kb on - strand, within GFF1937at 1963.810 kb on - strand, within GFF1937at 1963.822 kb on + strand, within GFF1937at 1963.825 kb on - strand, within GFF1937at 1963.830 kb on - strand, within GFF1937at 1963.876 kb on - strandat 1963.889 kb on + strandat 1963.892 kb on - strandat 1963.911 kb on - strandat 1963.921 kb on - strandat 1963.945 kb on - strandat 1963.959 kb on + strandat 1963.967 kb on - strandat 1963.967 kb on - strandat 1963.981 kb on + strandat 1963.984 kb on - strandat 1963.989 kb on - strandat 1963.989 kb on - strandat 1964.000 kb on + strandat 1964.000 kb on + strandat 1964.008 kb on - strandat 1964.008 kb on - strandat 1964.023 kb on - strandat 1964.097 kb on + strandat 1964.105 kb on - strandat 1964.105 kb on - strandat 1964.165 kb on + strandat 1964.165 kb on + strandat 1964.165 kb on + strandat 1964.165 kb on + strandat 1964.165 kb on + strandat 1964.165 kb on + strandat 1964.170 kb on + strandat 1964.173 kb on - strandat 1964.173 kb on - strandat 1964.173 kb on - strandat 1964.173 kb on - strandat 1964.173 kb on - strandat 1964.183 kb on + strandat 1964.196 kb on - strandat 1964.198 kb on - strandat 1964.241 kb on - strandat 1964.286 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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1,963,198 - GFF1937 0.55 +0.0
1,963,229 - GFF1937 0.57 +0.7
1,963,259 - GFF1937 0.58 -1.4
1,963,259 - GFF1937 0.58 +1.1
1,963,289 + GFF1937 0.60 +0.3
1,963,302 - GFF1937 0.60 -0.8
1,963,308 + GFF1937 0.61 +0.9
1,963,308 + GFF1937 0.61 -1.3
1,963,308 + GFF1937 0.61 -0.7
1,963,316 - GFF1937 0.61 -0.4
1,963,316 - GFF1937 0.61 -0.2
1,963,316 - GFF1937 0.61 +0.7
1,963,316 - GFF1937 0.61 -0.0
1,963,316 - GFF1937 0.61 -1.6
1,963,364 - GFF1937 0.64 -0.1
1,963,366 - GFF1937 0.64 -0.2
1,963,376 + GFF1937 0.64 +0.7
1,963,380 + GFF1937 0.64 +0.3
1,963,412 + GFF1937 0.66 -0.1
1,963,430 + GFF1937 0.67 +0.7
1,963,430 + GFF1937 0.67 -0.5
1,963,438 - GFF1937 0.67 +0.2
1,963,438 - GFF1937 0.67 -0.1
1,963,449 - GFF1937 0.68 +0.3
1,963,493 + GFF1937 0.70 +0.3
1,963,493 - GFF1937 0.70 +0.4
1,963,499 - GFF1937 0.71 -1.8
1,963,528 - GFF1937 0.72 +0.6
1,963,528 - GFF1937 0.72 +0.4
1,963,528 - GFF1937 0.72 +1.0
1,963,528 - GFF1937 0.72 -0.1
1,963,528 - GFF1937 0.72 +0.5
1,963,531 - GFF1937 0.72 -0.4
1,963,537 + GFF1937 0.73 -1.9
1,963,556 + GFF1937 0.74 -0.5
1,963,556 + GFF1937 0.74 -2.3
1,963,564 - GFF1937 0.74 +0.1
1,963,564 - GFF1937 0.74 -2.4
1,963,564 - GFF1937 0.74 -0.2
1,963,566 + GFF1937 0.74 +0.5
1,963,605 + GFF1937 0.76 -0.6
1,963,605 + GFF1937 0.76 -0.2
1,963,605 + GFF1937 0.76 +0.6
1,963,613 - GFF1937 0.77 -0.6
1,963,614 + GFF1937 0.77 -0.3
1,963,614 + GFF1937 0.77 -0.1
1,963,614 + GFF1937 0.77 -0.3
1,963,614 + GFF1937 0.77 -0.3
1,963,622 + GFF1937 0.77 -0.7
1,963,622 - GFF1937 0.77 +1.5
1,963,622 - GFF1937 0.77 -0.9
1,963,622 - GFF1937 0.77 -2.2
1,963,622 - GFF1937 0.77 -0.6
1,963,627 + GFF1937 0.77 -1.6
1,963,630 - GFF1937 0.77 -0.2
1,963,632 - GFF1937 0.78 -0.3
1,963,655 + GFF1937 0.79 -2.2
1,963,655 + GFF1937 0.79 -1.7
1,963,663 - GFF1937 0.79 -1.4
1,963,663 - GFF1937 0.79 -0.5
1,963,663 - GFF1937 0.79 -1.5
1,963,663 - GFF1937 0.79 -2.1
1,963,663 - GFF1937 0.79 +0.0
1,963,665 + GFF1937 0.79 +1.4
1,963,681 - GFF1937 0.80 +0.3
1,963,689 + GFF1937 0.81 -0.5
1,963,697 - GFF1937 0.81 -0.0
1,963,697 - GFF1937 0.81 -0.7
1,963,697 - GFF1937 0.81 -0.6
1,963,697 - GFF1937 0.81 -0.6
1,963,697 - GFF1937 0.81 +0.4
1,963,698 + GFF1937 0.81 +0.6
1,963,699 + GFF1937 0.81 +0.2
1,963,700 + GFF1937 0.81 +0.3
1,963,700 + GFF1937 0.81 -1.4
1,963,702 - GFF1937 0.81 +0.1
1,963,706 - GFF1937 0.81 -0.3
1,963,719 - GFF1937 0.82 +0.4
1,963,721 - GFF1937 0.82 +0.2
1,963,758 - GFF1937 0.84 -0.4
1,963,787 + GFF1937 0.86 -1.0
1,963,790 - GFF1937 0.86 -0.6
1,963,792 + GFF1937 0.86 -1.4
1,963,792 + GFF1937 0.86 -0.4
1,963,792 + GFF1937 0.86 -0.0
1,963,795 - GFF1937 0.86 +0.8
1,963,800 - GFF1937 0.86 -0.5
1,963,800 - GFF1937 0.86 -0.3
1,963,800 - GFF1937 0.86 -0.0
1,963,800 - GFF1937 0.86 -0.0
1,963,800 - GFF1937 0.86 -0.4
1,963,800 - GFF1937 0.86 +0.6
1,963,802 + GFF1937 0.86 -1.0
1,963,802 + GFF1937 0.86 -1.1
1,963,804 - GFF1937 0.86 +0.1
1,963,810 - GFF1937 0.87 -0.2
1,963,810 - GFF1937 0.87 -0.6
1,963,822 + GFF1937 0.87 -0.5
1,963,825 - GFF1937 0.88 +0.1
1,963,830 - GFF1937 0.88 +0.8
1,963,876 - -2.7
1,963,889 + -0.8
1,963,892 - +0.3
1,963,911 - -0.2
1,963,921 - +1.0
1,963,945 - +0.2
1,963,959 + +0.6
1,963,967 - -1.0
1,963,967 - +0.3
1,963,981 + +1.4
1,963,984 - -0.1
1,963,989 - -0.1
1,963,989 - +1.4
1,964,000 + +0.1
1,964,000 + +0.4
1,964,008 - +0.6
1,964,008 - +0.3
1,964,023 - +0.4
1,964,097 + -0.5
1,964,105 - +0.2
1,964,105 - +1.2
1,964,165 + -0.4
1,964,165 + -2.2
1,964,165 + -0.5
1,964,165 + +1.1
1,964,165 + -1.7
1,964,165 + +0.2
1,964,170 + +0.1
1,964,173 - +0.6
1,964,173 - +0.9
1,964,173 - -0.3
1,964,173 - -0.7
1,964,173 - +0.0
1,964,183 + -0.0
1,964,196 - -2.5
1,964,198 - -0.5
1,964,241 - +0.3
1,964,286 - -0.1

Or see this region's nucleotide sequence