Strain Fitness in Sphingobium sp. HT1-2 around GFF1900

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,923,318	+		GFF1898	0.81	+0.1
1,923,318	+		GFF1898	0.81	+1.2
1,923,318	+		GFF1898	0.81	+0.1
1,923,326	-		GFF1898	0.82	+0.6
1,923,326	-		GFF1898	0.82	+2.1
1,923,343	-		GFF1898	0.82	-0.5
1,923,348	+		GFF1898	0.83	+0.2
1,923,369	+		GFF1898	0.84	+0.3
1,923,382	+		GFF1898	0.84	+0.6
1,923,390	-		GFF1898	0.84	-0.5
1,923,393	+		GFF1898	0.85	+0.1
1,923,407	-		GFF1898	0.85	+0.5
1,923,559	+				+0.3
1,923,559	+				-0.0
1,923,573	+				-0.4
1,923,577	-				-0.4
1,923,577	-				-0.1
1,923,577	-				-0.9
1,923,578	-				+0.7
1,923,581	-				-0.4
1,923,622	-				-1.0
1,923,702	-				+0.2
1,923,819	+		GFF1899	0.14	+1.3
1,923,827	-		GFF1899	0.15	-0.9
1,923,827	-		GFF1899	0.15	-0.6
1,923,845	+		GFF1899	0.19	-0.2
1,923,845	+		GFF1899	0.19	+0.5
1,923,845	+		GFF1899	0.19	-0.4
1,923,845	+		GFF1899	0.19	-2.1
1,923,845	+		GFF1899	0.19	+0.5
1,923,845	+		GFF1899	0.19	+0.8
1,923,845	+		GFF1899	0.19	-1.0
1,923,845	+		GFF1899	0.19	+0.6
1,923,845	+		GFF1899	0.19	-0.1
1,923,845	+		GFF1899	0.19	-1.1
1,923,850	+		GFF1899	0.20	-0.4
1,923,850	+		GFF1899	0.20	-1.2
1,923,853	-		GFF1899	0.21	+0.4
1,923,855	+		GFF1899	0.21	+0.5
1,923,855	+		GFF1899	0.21	-0.2
1,923,887	-		GFF1899	0.28	-0.4
1,923,915	+		GFF1899	0.33	+0.6
1,923,923	-		GFF1899	0.35	+0.0
1,923,923	-		GFF1899	0.35	+0.8
1,923,938	+		GFF1899	0.38	-2.2
1,923,946	+		GFF1899	0.39	-1.3
1,923,997	+		GFF1899	0.50	-1.8
1,924,001	+		GFF1899	0.50	-1.9
1,924,005	-		GFF1899	0.51	+0.7
1,924,005	-		GFF1899	0.51	-0.2
1,924,007	+		GFF1899	0.52	+0.1
1,924,009	-		GFF1899	0.52	+0.3
1,924,014	-		GFF1899	0.53	-2.9
1,924,029	+		GFF1899	0.56	+0.3
1,924,029	+		GFF1899	0.56	+0.1
1,924,037	-		GFF1899	0.58	+0.5
1,924,085	-		GFF1899	0.67	+0.3
1,924,090	-		GFF1899	0.68	-0.0
1,924,113	-		GFF1899	0.73	-0.6
1,924,160	-		GFF1899	0.82	+0.4
1,924,166	+		GFF1899	0.84	+1.2
1,924,166	+		GFF1899	0.84	-0.1
1,924,199	-				+0.6
1,924,213	+				+0.2
1,924,221	-				+1.4
1,924,242	+				+0.1
1,924,297	-				+0.0
1,924,299	+				+0.5
1,924,311	-				-0.8
1,924,317	+				+1.0
1,924,359	+				+0.1
1,924,386	+		GFF1900	0.10	-0.0
1,924,425	-		GFF1900	0.14	-1.6
1,924,436	+		GFF1900	0.15	-1.3
1,924,441	+		GFF1900	0.16	-0.1
1,924,441	+		GFF1900	0.16	-0.7
1,924,441	+		GFF1900	0.16	+0.8
1,924,449	-		GFF1900	0.16	+0.7
1,924,458	+		GFF1900	0.17	+1.9
1,924,459	-		GFF1900	0.17	+0.0
1,924,473	+		GFF1900	0.19	-1.9
1,924,473	+		GFF1900	0.19	-0.6
1,924,483	+		GFF1900	0.20	-1.2
1,924,484	+		GFF1900	0.20	-0.7
1,924,491	-		GFF1900	0.20	+2.0
1,924,491	-		GFF1900	0.20	-1.8
1,924,492	-		GFF1900	0.20	-1.1
1,924,493	+		GFF1900	0.21	+0.6
1,924,574	+		GFF1900	0.28	+0.0
1,924,586	-		GFF1900	0.29	+0.3
1,924,658	+		GFF1900	0.36	+0.0
1,924,686	+		GFF1900	0.39	-0.9
1,924,686	+		GFF1900	0.39	-0.5
1,924,691	+		GFF1900	0.39	-1.7
1,924,712	+		GFF1900	0.41	+0.1
1,924,712	+		GFF1900	0.41	+1.7
1,924,712	+		GFF1900	0.41	-1.4
1,924,712	+		GFF1900	0.41	+0.8
1,924,720	-		GFF1900	0.42	+1.1
1,924,720	-		GFF1900	0.42	+1.0
1,924,720	-		GFF1900	0.42	+1.0
1,924,720	-		GFF1900	0.42	+0.4
1,924,720	-		GFF1900	0.42	-1.6
1,924,720	-		GFF1900	0.42	+0.7
1,924,727	+		GFF1900	0.43	-0.0
1,924,730	-		GFF1900	0.43	-0.2
1,924,739	+		GFF1900	0.44	+0.3
1,924,744	+		GFF1900	0.45	-0.4
1,924,752	-		GFF1900	0.45	+0.8
1,924,762	+		GFF1900	0.46	-0.3
1,924,775	-		GFF1900	0.47	-0.9
1,924,775	-		GFF1900	0.47	-0.8
1,924,775	-		GFF1900	0.47	-0.2
1,924,782	+		GFF1900	0.48	-0.2
1,924,782	+		GFF1900	0.48	-0.4
1,924,782	+		GFF1900	0.48	+0.1
1,924,782	+		GFF1900	0.48	+0.7
1,924,782	+		GFF1900	0.48	+0.7
1,924,782	+		GFF1900	0.48	-1.5
1,924,788	+		GFF1900	0.49	-0.5
1,924,790	-		GFF1900	0.49	-0.2
1,924,790	-		GFF1900	0.49	-2.0
1,924,790	-		GFF1900	0.49	-0.5
1,924,790	-		GFF1900	0.49	+0.8
1,924,790	-		GFF1900	0.49	-0.2
1,924,864	+		GFF1900	0.56	+1.4
1,924,865	-		GFF1900	0.56	+0.4
1,924,865	-		GFF1900	0.56	+0.7
1,924,866	+		GFF1900	0.56	-0.2
1,924,875	-		GFF1900	0.57	-0.4
1,924,875	-		GFF1900	0.57	-0.9
1,924,875	-		GFF1900	0.57	-2.0
1,924,875	-		GFF1900	0.57	-1.4
1,924,877	+		GFF1900	0.57	-1.0
1,924,877	+		GFF1900	0.57	+0.2
1,924,879	-		GFF1900	0.57	+0.8
1,924,895	+		GFF1900	0.59	+0.9
1,924,903	-		GFF1900	0.60	-0.5
1,924,921	+		GFF1900	0.61	-0.6
1,925,006	+		GFF1900	0.70	+0.3
1,925,014	-		GFF1900	0.70	+0.8
1,925,014	-		GFF1900	0.70	+1.0
1,925,014	-		GFF1900	0.70	-1.6
1,925,055	+		GFF1900	0.74	+0.6
1,925,058	-		GFF1900	0.74	-1.1
1,925,062	-		GFF1900	0.75	-0.3
1,925,084	-		GFF1900	0.77	+0.5
1,925,092	+		GFF1900	0.78	-0.7
1,925,092	+		GFF1900	0.78	-1.4
1,925,100	-		GFF1900	0.79	+0.9
1,925,100	-		GFF1900	0.79	-0.3
1,925,153	+		GFF1900	0.84	+0.4
1,925,166	+		GFF1900	0.85	-1.8
1,925,174	+		GFF1900	0.86	+0.5
1,925,199	-		GFF1900	0.88	-0.5
1,925,201	+		GFF1900	0.88	+0.7
1,925,267	+				+0.6
1,925,267	+				+0.3
1,925,267	+				+0.2
1,925,267	+				-0.8
1,925,275	-				-0.7
1,925,275	-				+0.6
1,925,275	-				-0.1
1,925,275	-				-1.0
1,925,275	-				+0.8
1,925,280	-				+0.0
1,925,309	+				-0.6
1,925,311	+				+0.3
1,925,311	+				+0.1
1,925,346	-				-0.2
1,925,348	-				+0.6
1,925,353	-				+1.0
1,925,357	+				-0.6
1,925,357	+				+0.6
1,925,367	+				+1.2
1,925,371	+				+1.2
1,925,377	+				-0.8
1,925,430	+				-0.3
1,925,460	-				+0.2
1,925,476	+				-0.1
1,925,537	-				+0.2
1,925,537	-				-1.2
1,925,540	+				-2.7
1,925,542	+				-0.6
1,925,548	-				-0.0
1,925,548	-				+1.0
1,925,548	-				+1.4
1,925,548	-				+0.1
1,925,563	+		GFF1901	0.13	-0.8
1,925,596	-		GFF1901	0.24	-0.6
1,925,635	-		GFF1901	0.37	-0.3
1,925,705	+		GFF1901	0.62	-0.4
1,925,714	+		GFF1901	0.65	-1.9
1,925,714	+		GFF1901	0.65	+0.7
1,925,716	+		GFF1901	0.65	+0.5
1,925,726	+		GFF1901	0.69	+0.5
1,925,726	+		GFF1901	0.69	-2.3
1,925,726	+		GFF1901	0.69	+0.5
1,925,726	+		GFF1901	0.69	-1.8
1,925,731	+		GFF1901	0.70	-0.3
1,925,739	-		GFF1901	0.73	-0.5
1,925,745	+		GFF1901	0.75	-0.2
1,925,813	+				+1.2
1,925,826	-				-0.6
1,925,826	-				+0.0
1,925,826	-				-0.5
1,925,855	-				+1.0
1,925,859	+				-0.1
1,925,859	+				+0.6
1,925,867	-				-1.7
1,925,867	-				+0.7
1,925,972	-		GFF1902	0.28	-1.0
1,925,972	-		GFF1902	0.28	-0.1
1,925,982	+		GFF1902	0.31	-0.5
1,926,002	+		GFF1902	0.36	-0.8
1,926,130	+		GFF1902	0.67	-2.6
1,926,176	+		GFF1902	0.78	+1.3
1,926,246	+				-0.1
1,926,254	-				-1.5
1,926,254	-				-0.3
1,926,263	+				+1.0
1,926,273	+				-0.2