Strain Fitness in Sphingobium sp. HT1-2 around GFF1862

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,890,163	-		GFF1860	0.82	+0.3
1,890,185	+		GFF1860	0.84	-1.8
1,890,193	+		GFF1860	0.85	-0.4
1,890,204	+		GFF1860	0.86	+0.4
1,890,204	+		GFF1860	0.86	+0.5
1,890,204	+		GFF1860	0.86	-2.2
1,890,208	+		GFF1860	0.86	+0.3
1,890,212	-		GFF1860	0.86	-1.9
1,890,212	-		GFF1860	0.86	-1.1
1,890,212	-		GFF1860	0.86	-1.6
1,890,212	-		GFF1860	0.86	+0.5
1,890,212	-		GFF1860	0.86	-2.5
1,890,212	-		GFF1860	0.86	-1.8
1,890,212	-		GFF1860	0.86	+0.2
1,890,216	-		GFF1860	0.86	-1.4
1,890,236	+		GFF1860	0.88	-0.8
1,890,236	+		GFF1860	0.88	-0.4
1,890,236	+		GFF1860	0.88	-1.8
1,890,236	+		GFF1860	0.88	+0.1
1,890,238	+		GFF1860	0.88	-2.0
1,890,238	+		GFF1860	0.88	-0.1
1,890,244	-		GFF1860	0.89	-0.9
1,890,244	-		GFF1860	0.89	+0.3
1,890,331	+				+0.2
1,890,346	+				-2.1
1,890,354	-				-0.8
1,890,354	-				+1.5
1,890,407	-				+0.9
1,890,411	+				-1.1
1,890,411	+				-1.1
1,890,414	-				-1.6
1,890,419	-				-0.6
1,890,419	-				+0.2
1,890,419	-				+0.3
1,890,419	-				-0.5
1,890,419	-				+0.3
1,890,419	-				-1.1
1,890,419	-				+0.2
1,890,419	-				-2.1
1,890,419	-				-2.0
1,890,465	+				-0.1
1,890,465	+				+1.0
1,890,465	-				+0.3
1,890,473	-				-1.3
1,890,473	-				-0.0
1,890,488	+				-1.1
1,890,488	+				-1.1
1,890,491	-				+0.6
1,890,496	-				-1.4
1,890,496	-				-0.6
1,890,518	-				-1.6
1,890,562	-				+0.3
1,890,562	-				+1.3
1,890,575	-				+0.2
1,890,575	-				-0.9
1,890,577	+				+0.0
1,890,577	-				-0.3
1,890,588	+				+0.3
1,890,596	-				-1.7
1,890,608	-				-0.3
1,890,617	+				-0.5
1,890,617	+				-1.6
1,890,617	+				-1.8
1,890,625	-				-0.8
1,890,641	-				-1.6
1,890,643	+				+1.2
1,890,659	-				+0.1
1,890,659	-				+0.1
1,890,676	-				+0.0
1,890,677	-				-0.9
1,890,693	-				+0.8
1,890,696	+				-0.6
1,890,696	+				-1.9
1,890,704	-				+0.1
1,890,704	-				-0.0
1,890,704	-				-1.8
1,890,730	+				-2.0
1,890,730	+				+0.1
1,890,770	+				-2.4
1,890,785	+				+1.0
1,890,785	+				-0.2
1,890,888	-				+0.5
1,890,911	+				-0.4
1,890,954	-				-1.5
1,890,956	+				+1.3
1,890,958	-				-0.2
1,890,964	-				+0.3
1,890,964	-				+0.2
1,890,990	+				-2.0
1,891,006	-				-0.2
1,891,011	+				-1.1
1,891,015	+				+1.5
1,891,017	-				-0.4
1,891,018	-				-0.8
1,891,021	-				+1.0
1,891,036	+				+0.7
1,891,044	-				+0.2
1,891,056	+				+0.9
1,891,056	-				+0.9
1,891,056	-				+1.6
1,891,061	+				+0.7
1,891,065	-				+0.0
1,891,100	-		GFF1862	0.11	+1.4
1,891,113	-		GFF1862	0.14	+1.0
1,891,121	+		GFF1862	0.15	+0.9
1,891,124	+		GFF1862	0.16	-0.1
1,891,126	+		GFF1862	0.16	+1.2
1,891,145	+		GFF1862	0.20	+1.5
1,891,145	+		GFF1862	0.20	-0.9
1,891,153	-		GFF1862	0.22	+0.4
1,891,153	-		GFF1862	0.22	-0.4
1,891,153	-		GFF1862	0.22	+1.7
1,891,158	-		GFF1862	0.23	+1.7
1,891,158	-		GFF1862	0.23	-0.2
1,891,163	-		GFF1862	0.24	+0.2
1,891,173	+		GFF1862	0.26	-0.3
1,891,188	+		GFF1862	0.29	+0.8
1,891,189	+		GFF1862	0.29	+2.1
1,891,189	+		GFF1862	0.29	+0.7
1,891,197	-		GFF1862	0.30	-0.7
1,891,197	-		GFF1862	0.30	+0.4
1,891,197	-		GFF1862	0.30	+0.1
1,891,228	-		GFF1862	0.36	+0.9
1,891,241	+		GFF1862	0.39	+0.4
1,891,241	+		GFF1862	0.39	+0.7
1,891,243	-		GFF1862	0.39	+2.2
1,891,255	+		GFF1862	0.42	+0.7
1,891,255	+		GFF1862	0.42	+1.3
1,891,255	+		GFF1862	0.42	+1.2
1,891,263	-		GFF1862	0.43	+0.3
1,891,295	+		GFF1862	0.50	+0.3
1,891,295	+		GFF1862	0.50	+0.1
1,891,303	-		GFF1862	0.51	-0.6
1,891,303	-		GFF1862	0.51	+0.3
1,891,314	+		GFF1862	0.53	+0.4
1,891,325	+		GFF1862	0.55	+0.4
1,891,330	+		GFF1862	0.56	-0.6
1,891,333	-		GFF1862	0.57	+1.3
1,891,338	-		GFF1862	0.58	+0.2
1,891,338	-		GFF1862	0.58	+0.6
1,891,384	-		GFF1862	0.67	-0.8
1,891,385	-		GFF1862	0.67	+1.6
1,891,415	+		GFF1862	0.73	+1.1
1,891,443	+		GFF1862	0.79	+1.0
1,891,445	+		GFF1862	0.79	+0.9
1,891,450	+		GFF1862	0.80	+1.4
1,891,453	-		GFF1862	0.81	+0.6
1,891,453	-		GFF1862	0.81	+0.5
1,891,458	-		GFF1862	0.82	+0.1
1,891,472	-		GFF1862	0.84	-0.8
1,891,472	-		GFF1862	0.84	+0.9
1,891,489	+		GFF1862	0.88	+0.3
1,891,509	-				+0.5
1,891,528	+				+0.4
1,891,528	-				+0.8
1,891,568	+				-0.3
1,891,576	-				-0.2
1,891,651	+				+0.1
1,891,683	+				-0.5
1,891,688	+				+1.3
1,891,688	+				+0.3
1,891,688	+				-0.2
1,891,688	+				-0.2
1,891,688	+				-1.4
1,891,688	+				-0.4
1,891,688	+				-2.4
1,891,688	+				+0.2
1,891,688	+				+0.1
1,891,688	+				-0.4
1,891,688	+				+0.7
1,891,688	+				+0.4
1,891,688	+				-0.1
1,891,688	+				+0.6
1,891,688	+				+0.2
1,891,688	+				+1.2
1,891,688	+				+1.1
1,891,691	-				-1.5
1,891,693	+				+1.1
1,891,696	-				-0.6
1,891,696	-				+0.6
1,891,696	-				-1.3
1,891,696	-				+0.1
1,891,696	-				+0.5
1,891,696	-				+1.2
1,891,696	-				+0.7
1,891,696	-				-0.9
1,891,696	-				-0.4
1,891,696	-				-0.7
1,891,696	-				-1.1
1,891,696	-				-0.8
1,891,696	-				+0.9
1,891,696	-				-1.2
1,891,696	-				-0.7
1,891,696	-				-0.3
1,891,696	-				+1.3
1,891,696	-				-0.7
1,891,696	-				-0.5
1,891,701	-				+0.4
1,891,717	+				-1.4
1,891,725	-				-2.5
1,891,728	+				-1.5
1,891,733	+				+1.4
1,891,733	+				-0.4
1,891,733	+				-0.2
1,891,738	-				+1.3
1,891,741	-				-0.3
1,891,741	-				+0.9
1,891,741	-				-1.4
1,891,741	-				-0.5
1,891,748	+				-2.0
1,891,748	+				+0.0
1,891,748	+				+0.1
1,891,748	+				-0.3
1,891,748	+				+0.3
1,891,748	+				-0.8
1,891,750	+				-0.2
1,891,751	-				-1.4
1,891,751	-				-1.5
1,891,752	+				-0.8
1,891,752	+				+0.1
1,891,752	+				-1.5
1,891,753	+				-1.2
1,891,756	-		GFF1863	0.11	-0.5
1,891,756	-		GFF1863	0.11	+1.1
1,891,756	-		GFF1863	0.11	+1.1
1,891,757	+		GFF1863	0.11	+0.7
1,891,758	+		GFF1863	0.11	-0.8
1,891,758	+		GFF1863	0.11	-1.5
1,891,758	+		GFF1863	0.11	-0.4
1,891,758	+		GFF1863	0.11	+0.8
1,891,758	+		GFF1863	0.11	+0.7
1,891,760	-		GFF1863	0.12	-0.2
1,891,761	-		GFF1863	0.12	+1.1
1,891,762	+		GFF1863	0.13	-0.6
1,891,763	+		GFF1863	0.13	-0.5
1,891,764	+		GFF1863	0.13	+0.7
1,891,764	+		GFF1863	0.13	+0.4
1,891,764	+		GFF1863	0.13	-0.7
1,891,766	-		GFF1863	0.14	-0.3
1,891,766	-		GFF1863	0.14	+0.2
1,891,766	-		GFF1863	0.14	-0.2
1,891,771	-		GFF1863	0.15	-0.5
1,891,772	-		GFF1863	0.16	-1.4
1,891,772	-		GFF1863	0.16	-0.6
1,891,838	-		GFF1863	0.36	-0.1
1,891,838	-		GFF1863	0.36	+1.6
1,891,838	-		GFF1863	0.36	-0.6
1,891,840	+		GFF1863	0.37	-0.9
1,891,840	+		GFF1863	0.37	-1.2
1,891,880	+		GFF1863	0.49	+0.7
1,891,880	+		GFF1863	0.49	-0.0
1,891,888	-		GFF1863	0.52	-0.6
1,891,888	-		GFF1863	0.52	-1.7
1,891,919	+		GFF1863	0.61	-0.5
1,891,924	+		GFF1863	0.63	-0.2
1,891,927	-		GFF1863	0.64	-1.8
1,891,932	-		GFF1863	0.65	-1.8
1,891,932	-		GFF1863	0.65	-0.8
1,891,971	+		GFF1863	0.77	-1.6
1,891,991	+		GFF1863	0.83	+0.2
1,892,001	+		GFF1863	0.86	-0.8
1,892,009	-		GFF1863	0.89	-0.5
1,892,009	-		GFF1863	0.89	+0.7
1,892,016	+				-0.4
1,892,016	+				-0.4
1,892,021	+				+0.2
1,892,024	-				-0.9
1,892,024	-				-1.7
1,892,024	-				+0.9
1,892,029	-				-2.5
1,892,038	+				-0.1
1,892,046	-				-1.3
1,892,053	-				+0.1
1,892,056	-				-0.9
1,892,057	-				+0.5
1,892,060	+				-1.9
1,892,063	+				-0.3
1,892,067	-				+0.4
1,892,068	-				+0.2
1,892,105	+				+1.5
1,892,105	+				+0.9
1,892,113	-				-0.3
1,892,114	+				-1.1
1,892,122	-				+1.1
1,892,140	+				-0.6
1,892,145	+				-2.6
1,892,152	+				-0.9
1,892,152	+				-0.3
1,892,152	+				-1.2
1,892,152	+				-0.2
1,892,156	+				-2.1
1,892,160	-				-0.1
1,892,160	-				-0.1
1,892,162	-				+0.5
1,892,162	-				+0.8
1,892,163	+				+0.2
1,892,163	+				-0.7
1,892,163	+				+1.1
1,892,163	+				+0.3
1,892,163	+				-0.1
1,892,163	+				-0.3
1,892,163	+				-0.5
1,892,163	+				+0.5
1,892,171	-				-0.2
1,892,171	-				-1.8
1,892,171	-				+0.8
1,892,171	-				-1.2
1,892,171	-				-0.3
1,892,171	-				-0.0
1,892,171	-				+0.8
1,892,173	+				+0.2
1,892,173	+				-1.7
1,892,173	+				-0.4
1,892,173	+				-0.3
1,892,173	+				-1.2
1,892,173	+				-0.1
1,892,173	+				-0.3
1,892,173	+				+1.7
1,892,173	+				+0.1
1,892,173	+				+1.2
1,892,173	+				+0.7
1,892,173	+				-0.0
1,892,173	+				+0.2
1,892,173	+				+0.7
1,892,173	+				-2.1
1,892,173	+				-0.8
1,892,173	+				+1.9
1,892,173	+				-0.1
1,892,173	+				-1.4
1,892,176	-				-0.5
1,892,181	-				+0.1
1,892,181	-				-0.4
1,892,181	-				-0.2
1,892,181	-				+0.0
1,892,181	-				+0.6
1,892,181	-				+0.5
1,892,181	-				+0.3
1,892,181	-				+0.4
1,892,181	-				-1.1
1,892,181	-				-1.4
1,892,181	-				-1.1
1,892,181	-				+0.8
1,892,181	-				-0.1
1,892,181	-				-0.7
1,892,181	-				-0.1
1,892,181	-				+0.4
1,892,181	-				+0.4
1,892,181	-				+0.2
1,892,188	+				+0.4
1,892,190	+				-1.2
1,892,198	+				+0.8
1,892,204	+				+1.0
1,892,204	+				-1.6
1,892,212	-				+0.8
1,892,212	-				+0.7
1,892,212	-				-1.0
1,892,212	-				-0.6
1,892,214	+				+0.7
1,892,241	+				+0.5
1,892,249	-				+0.5
1,892,249	-				-2.3
1,892,251	+				-0.9
1,892,307	-				+0.0
1,892,307	-				-2.7
1,892,312	-				+0.4
1,892,317	+				-0.5
1,892,322	+				+0.2
1,892,322	+				+0.6
1,892,322	+				+0.9
1,892,327	-				-0.5
1,892,332	+				-0.4
1,892,332	+				+0.9
1,892,340	-				-0.4
1,892,340	-				-0.3
1,892,365	+				-1.2
1,892,371	-				-1.3
1,892,371	-				+0.7
1,892,378	-				-1.3
1,892,380	+				-0.9
1,892,386	+				-0.2
1,892,386	+				-0.4
1,892,386	+				-0.3
1,892,388	+				-0.6
1,892,388	-				-0.2
1,892,388	-				+0.1
1,892,396	-				-0.5
1,892,396	-				+0.7
1,892,401	+				-0.1
1,892,401	+				-1.4
1,892,401	+				-0.6
1,892,401	+				-0.3
1,892,401	+				-0.3
1,892,409	-				+0.0
1,892,409	-				+0.2
1,892,409	-				+0.6
1,892,409	-				-1.3
1,892,409	-				+0.5
1,892,466	+				-1.3
1,892,474	-				-1.3
1,892,474	-				+0.4
1,892,492	+				-0.1
1,892,493	-				+0.0
1,892,493	-				+0.2
1,892,522	-				-1.8