Strain Fitness in Sphingobium sp. HT1-2 around GFF1839

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,859,255	-		GFF1838	0.13	-1.4
1,859,325	+		GFF1838	0.20	+1.5
1,859,342	+		GFF1838	0.21	-0.5
1,859,352	+		GFF1838	0.22	-1.4
1,859,397	+		GFF1838	0.27	-0.1
1,859,416	-		GFF1838	0.29	-1.2
1,859,421	-		GFF1838	0.29	-0.8
1,859,451	+		GFF1838	0.32	+1.8
1,859,451	-		GFF1838	0.32	-1.1
1,859,459	-		GFF1838	0.33	-0.1
1,859,508	-		GFF1838	0.37	+0.5
1,859,517	+		GFF1838	0.38	+0.5
1,859,517	+		GFF1838	0.38	+1.6
1,859,517	+		GFF1838	0.38	+1.2
1,859,517	+		GFF1838	0.38	+0.4
1,859,517	+		GFF1838	0.38	-2.7
1,859,517	+		GFF1838	0.38	-1.6
1,859,517	+		GFF1838	0.38	+0.1
1,859,517	+		GFF1838	0.38	+0.1
1,859,517	+		GFF1838	0.38	-0.2
1,859,517	+		GFF1838	0.38	+0.4
1,859,517	+		GFF1838	0.38	-1.0
1,859,519	+		GFF1838	0.39	-0.7
1,859,522	+		GFF1838	0.39	+0.3
1,859,525	-		GFF1838	0.39	-0.9
1,859,525	-		GFF1838	0.39	-0.3
1,859,525	-		GFF1838	0.39	-0.0
1,859,525	-		GFF1838	0.39	-2.5
1,859,525	-		GFF1838	0.39	+0.7
1,859,563	+		GFF1838	0.43	+0.3
1,859,572	+		GFF1838	0.44	+0.9
1,859,575	-		GFF1838	0.44	+0.3
1,859,603	-		GFF1838	0.47	-0.0
1,859,635	-		GFF1838	0.50	-1.1
1,859,653	-		GFF1838	0.51	-1.4
1,859,717	-		GFF1838	0.58	-2.1
1,859,718	+		GFF1838	0.58	-0.3
1,859,718	+		GFF1838	0.58	+0.1
1,859,722	-		GFF1838	0.58	-1.2
1,859,752	+		GFF1838	0.61	-1.1
1,859,760	-		GFF1838	0.62	-1.3
1,859,761	+		GFF1838	0.62	-0.3
1,859,761	+		GFF1838	0.62	-0.6
1,859,769	-		GFF1838	0.63	+0.3
1,859,785	+		GFF1838	0.64	+0.9
1,859,793	-		GFF1838	0.65	-0.9
1,859,799	+		GFF1838	0.66	+0.2
1,859,815	-		GFF1838	0.67	+0.9
1,859,851	+		GFF1838	0.71	-0.1
1,859,854	+		GFF1838	0.71	+1.3
1,859,863	+		GFF1838	0.72	-1.9
1,859,863	+		GFF1838	0.72	+0.5
1,859,863	-		GFF1838	0.72	+0.2
1,859,864	-		GFF1838	0.72	-1.0
1,859,869	+		GFF1838	0.72	-1.1
1,859,872	-		GFF1838	0.73	-1.2
1,859,887	+		GFF1838	0.74	-0.2
1,859,901	-		GFF1838	0.75	-0.3
1,859,906	-		GFF1838	0.76	+0.6
1,859,914	-		GFF1838	0.77	-2.5
1,859,922	-		GFF1838	0.77	-1.0
1,859,924	+		GFF1838	0.78	-0.7
1,859,935	-		GFF1838	0.79	-1.8
1,859,939	+		GFF1838	0.79	-1.1
1,859,947	-		GFF1838	0.80	-0.1
1,859,950	+		GFF1838	0.80	+0.7
1,859,958	-		GFF1838	0.81	-0.6
1,859,980	-		GFF1838	0.83	+0.1
1,859,980	-		GFF1838	0.83	+0.4
1,859,982	+		GFF1838	0.83	-1.6
1,859,982	-		GFF1838	0.83	-0.7
1,859,982	-		GFF1838	0.83	-2.0
1,859,990	-		GFF1838	0.84	-2.3
1,859,990	-		GFF1838	0.84	-0.4
1,859,990	-		GFF1838	0.84	+0.9
1,859,990	-		GFF1838	0.84	+0.0
1,859,990	-		GFF1838	0.84	-1.4
1,859,992	+		GFF1838	0.84	+0.2
1,859,992	-		GFF1838	0.84	-0.8
1,859,994	-		GFF1838	0.84	+0.3
1,860,000	-		GFF1838	0.85	+0.1
1,860,000	-		GFF1838	0.85	-1.9
1,860,000	-		GFF1838	0.85	-0.4
1,860,000	-		GFF1838	0.85	-0.5
1,860,000	-		GFF1838	0.85	-1.0
1,860,004	+		GFF1838	0.85	-1.2
1,860,010	+		GFF1838	0.86	-0.8
1,860,048	+		GFF1838	0.90	+1.7
1,860,048	+		GFF1838	0.90	-1.5
1,860,048	+		GFF1838	0.90	+0.5
1,860,068	+				-0.1
1,860,068	+				-0.1
1,860,073	+				+0.2
1,860,073	+				+0.1
1,860,073	+				-1.6
1,860,073	+				-2.0
1,860,081	-				-0.5
1,860,081	-				-0.9
1,860,117	-				-0.8
1,860,119	+				+0.2
1,860,124	+				-0.5
1,860,124	+				-0.8
1,860,124	+				-0.3
1,860,124	+				+0.2
1,860,124	+				+1.1
1,860,124	+				-2.0
1,860,127	-				-0.3
1,860,132	-				-0.2
1,860,132	-				-0.5
1,860,132	-				-0.4
1,860,132	-				-0.6
1,860,194	+				-0.3
1,860,202	-				+0.5
1,860,228	-				-0.0
1,860,285	+				+0.9
1,860,285	+				+0.2
1,860,310	-				-1.3
1,860,346	+		GFF1839	0.11	+0.7
1,860,346	+		GFF1839	0.11	+1.2
1,860,350	+		GFF1839	0.12	+0.4
1,860,354	-		GFF1839	0.12	-0.7
1,860,392	-		GFF1839	0.16	-0.4
1,860,394	+		GFF1839	0.16	-0.5
1,860,394	+		GFF1839	0.16	+0.3
1,860,402	-		GFF1839	0.17	-0.1
1,860,402	-		GFF1839	0.17	-0.8
1,860,402	-		GFF1839	0.17	+0.7
1,860,429	-		GFF1839	0.20	+0.8
1,860,429	-		GFF1839	0.20	+0.0
1,860,450	+		GFF1839	0.22	-1.3
1,860,450	+		GFF1839	0.22	-0.1
1,860,455	+		GFF1839	0.23	-0.4
1,860,458	-		GFF1839	0.23	+0.7
1,860,458	-		GFF1839	0.23	-0.4
1,860,458	-		GFF1839	0.23	-0.6
1,860,459	+		GFF1839	0.23	-0.3
1,860,462	-		GFF1839	0.24	+0.3
1,860,463	-		GFF1839	0.24	+0.3
1,860,467	-		GFF1839	0.24	-1.5
1,860,467	-		GFF1839	0.24	-1.2
1,860,467	-		GFF1839	0.24	+0.5
1,860,484	+		GFF1839	0.26	-0.4
1,860,497	-		GFF1839	0.27	-0.5
1,860,498	-		GFF1839	0.28	-0.2
1,860,498	-		GFF1839	0.28	-1.8
1,860,498	-		GFF1839	0.28	+0.1
1,860,499	+		GFF1839	0.28	-1.7
1,860,499	+		GFF1839	0.28	-1.0
1,860,499	+		GFF1839	0.28	+1.1
1,860,502	-		GFF1839	0.28	-0.4
1,860,504	+		GFF1839	0.28	-1.7
1,860,504	+		GFF1839	0.28	-1.4
1,860,504	+		GFF1839	0.28	-0.6
1,860,504	+		GFF1839	0.28	+0.3
1,860,507	-		GFF1839	0.29	-0.6
1,860,507	-		GFF1839	0.29	-0.9
1,860,543	+		GFF1839	0.32	-0.7
1,860,556	-		GFF1839	0.34	+0.2
1,860,556	-		GFF1839	0.34	+0.0
1,860,556	-		GFF1839	0.34	-1.5
1,860,575	+		GFF1839	0.36	+0.7
1,860,575	+		GFF1839	0.36	+0.6
1,860,575	+		GFF1839	0.36	-0.4
1,860,575	+		GFF1839	0.36	-1.4
1,860,578	-		GFF1839	0.36	-1.0
1,860,583	-		GFF1839	0.37	-0.6
1,860,583	-		GFF1839	0.37	-0.0
1,860,583	-		GFF1839	0.37	-0.9
1,860,583	-		GFF1839	0.37	-2.1
1,860,583	-		GFF1839	0.37	+0.2
1,860,583	-		GFF1839	0.37	-2.0
1,860,583	-		GFF1839	0.37	-1.3
1,860,583	-		GFF1839	0.37	+0.7
1,860,583	-		GFF1839	0.37	+0.4
1,860,590	-		GFF1839	0.38	+0.2
1,860,601	+		GFF1839	0.39	+0.3
1,860,601	+		GFF1839	0.39	-2.7
1,860,609	-		GFF1839	0.40	+0.3
1,860,611	+		GFF1839	0.40	+0.4
1,860,619	-		GFF1839	0.41	-1.3
1,860,619	-		GFF1839	0.41	+1.5
1,860,623	+		GFF1839	0.41	+0.5
1,860,634	+		GFF1839	0.42	-0.3
1,860,634	+		GFF1839	0.42	+0.0
1,860,634	+		GFF1839	0.42	+0.7
1,860,634	+		GFF1839	0.42	-1.3
1,860,634	+		GFF1839	0.42	-1.2
1,860,634	+		GFF1839	0.42	-3.8
1,860,642	-		GFF1839	0.43	+1.9
1,860,642	-		GFF1839	0.43	+0.2
1,860,642	-		GFF1839	0.43	-0.2
1,860,642	-		GFF1839	0.43	-0.7
1,860,642	-		GFF1839	0.43	-1.4
1,860,656	+		GFF1839	0.45	-0.1
1,860,680	-		GFF1839	0.47	+0.3
1,860,707	+		GFF1839	0.50	+0.5
1,860,715	-		GFF1839	0.51	-1.3
1,860,727	+		GFF1839	0.52	+0.2
1,860,727	+		GFF1839	0.52	-0.5
1,860,727	+		GFF1839	0.52	-0.7
1,860,735	-		GFF1839	0.53	-0.7
1,860,735	-		GFF1839	0.53	+1.9
1,860,775	+		GFF1839	0.58	-0.1
1,860,775	+		GFF1839	0.58	+0.0
1,860,783	-		GFF1839	0.58	+0.5
1,860,783	-		GFF1839	0.58	-0.5
1,860,785	+		GFF1839	0.59	-0.7
1,860,785	+		GFF1839	0.59	+0.9
1,860,819	+		GFF1839	0.62	-0.2
1,860,820	+		GFF1839	0.62	-1.8
1,860,820	+		GFF1839	0.62	-0.1
1,860,820	+		GFF1839	0.62	-1.2
1,860,820	+		GFF1839	0.62	+0.3
1,860,827	-		GFF1839	0.63	-2.1
1,860,827	-		GFF1839	0.63	-0.6
1,860,855	+		GFF1839	0.66	-1.3
1,860,868	-		GFF1839	0.68	-0.3
1,860,986	+		GFF1839	0.80	-0.5
1,860,986	+		GFF1839	0.80	-0.4
1,860,986	+		GFF1839	0.80	+0.7
1,860,994	-		GFF1839	0.81	-1.2
1,860,998	+		GFF1839	0.82	-1.4
1,861,015	-		GFF1839	0.84	+0.3
1,861,018	+		GFF1839	0.84	-1.4
1,861,034	-		GFF1839	0.86	-0.9
1,861,038	+		GFF1839	0.86	-0.2
1,861,040	+		GFF1839	0.86	-0.1
1,861,048	-		GFF1839	0.87	-1.3
1,861,064	+		GFF1839	0.89	+0.0
1,861,064	+		GFF1839	0.89	-0.2
1,861,087	+				-0.8
1,861,087	+				+0.3
1,861,095	-				-0.4
1,861,095	-				+0.2
1,861,132	-				-1.0
1,861,145	-				+0.1
1,861,160	+				-0.5
1,861,160	+				-2.8
1,861,160	+				-1.2
1,861,165	+				-0.5
1,861,165	+				+0.3
1,861,165	+				-0.3
1,861,165	+				-0.3
1,861,168	-				+0.9
1,861,168	-				-0.4
1,861,173	-				-0.3
1,861,173	-				+0.5
1,861,173	-				-1.4
1,861,178	-				-0.3
1,861,178	-				-0.1
1,861,178	-				+0.5
1,861,181	+				-0.5
1,861,187	-				-1.6
1,861,189	-				-0.5
1,861,210	-				-1.1
1,861,212	+				+1.0
1,861,220	-				-0.7
1,861,220	-				-0.6
1,861,234	+				-0.8
1,861,258	-				+0.7
1,861,260	+				-0.4
1,861,260	+				-0.6
1,861,260	+				-0.1
1,861,260	+				+0.9
1,861,260	+				-1.9
1,861,260	+				-0.4
1,861,260	+				-0.1
1,861,260	+				-1.4
1,861,260	+				-0.4
1,861,260	+				+0.3
1,861,268	-				-0.7
1,861,268	-				-0.1
1,861,268	-				-0.1
1,861,268	-				+0.5
1,861,268	-				+0.9
1,861,268	-				+0.4
1,861,268	-				+0.4
1,861,268	-				+1.1
1,861,268	-				-0.3
1,861,268	-				-0.7
1,861,268	-				+0.2
1,861,270	+				-1.1
1,861,277	+				-0.6
1,861,280	+				+0.2
1,861,280	+				+0.1
1,861,283	-				-1.8
1,861,283	-				-0.7
1,861,288	-				-0.6
1,861,290	+				-0.3
1,861,301	+				+1.4
1,861,301	+				-1.3
1,861,302	-				+0.0
1,861,309	-				-0.8
1,861,311	-				-0.3
1,861,340	+				-1.1
1,861,362	+				+0.9
1,861,370	-				+0.9
1,861,375	-				-0.9
1,861,394	+				+0.2
1,861,414	+				+1.1
1,861,422	-				+0.1
1,861,441	+				-0.5
1,861,444	+				-0.1
1,861,444	+				-0.1
1,861,444	+				-1.5
1,861,444	+				-0.5
1,861,444	+				+0.3
1,861,444	+				+0.1
1,861,444	+				+0.3
1,861,452	-				-2.6
1,861,452	-				-0.7
1,861,459	+				+0.9
1,861,459	-				-0.7
1,861,463	+				-0.4
1,861,490	+				+0.1
1,861,501	+				+1.1
1,861,509	-				-0.5
1,861,509	-				-1.4
1,861,509	-				-0.5
1,861,515	+				-0.2
1,861,519	+				-0.9
1,861,519	+				+0.3
1,861,519	+				-0.1
1,861,519	+				-0.4
1,861,519	+				-0.4
1,861,519	+				-1.1
1,861,519	+				+0.1
1,861,525	+				-0.3
1,861,527	-				+1.6
1,861,527	-				-1.7
1,861,527	-				-0.8
1,861,527	-				-0.1
1,861,527	-				-0.3
1,861,527	-				-0.1
1,861,555	-				+0.1
1,861,555	-				-0.3
1,861,572	+				-0.1
1,861,572	+				+0.2
1,861,580	-				-0.5
1,861,581	-				+0.9
1,861,581	-				+0.2
1,861,642	+		GFF1840	0.12	-0.1
1,861,675	+		GFF1840	0.13	+0.5
1,861,705	+		GFF1840	0.15	+0.9
1,861,713	-		GFF1840	0.15	-0.9
1,861,715	+		GFF1840	0.15	+0.1
1,861,715	+		GFF1840	0.15	-0.7
1,861,715	+		GFF1840	0.15	-0.0
1,861,723	-		GFF1840	0.15	+1.1
1,861,731	+		GFF1840	0.16	+1.2
1,861,738	-		GFF1840	0.16	+0.4
1,861,738	-		GFF1840	0.16	-0.5
1,861,738	-		GFF1840	0.16	-1.2
1,861,776	+		GFF1840	0.17	-1.3
1,861,776	+		GFF1840	0.17	-0.4
1,861,776	+		GFF1840	0.17	-0.7
1,861,784	-		GFF1840	0.18	-0.2
1,861,784	-		GFF1840	0.18	+0.1
1,861,798	-		GFF1840	0.18	-0.3
1,861,798	-		GFF1840	0.18	-1.1
1,861,800	+		GFF1840	0.18	-0.5
1,861,800	+		GFF1840	0.18	-1.2
1,861,803	-		GFF1840	0.18	-0.3
1,861,803	-		GFF1840	0.18	+0.2
1,861,808	-		GFF1840	0.19	+1.0
1,861,839	+		GFF1840	0.20	-1.3
1,861,847	-		GFF1840	0.20	-1.3
1,861,856	-		GFF1840	0.21	-0.1
1,861,856	-		GFF1840	0.21	-0.0
1,861,868	-		GFF1840	0.21	-0.4
1,861,916	-		GFF1840	0.23	+0.5
1,861,920	+		GFF1840	0.23	+1.1
1,861,949	+		GFF1840	0.24	-1.8
1,861,952	-		GFF1840	0.24	-0.7
1,861,964	-		GFF1840	0.25	+0.3
1,861,970	+		GFF1840	0.25	-1.1
1,861,973	-		GFF1840	0.25	+0.2
1,861,992	+		GFF1840	0.26	-1.1
1,861,996	+		GFF1840	0.26	-0.4
1,861,997	+		GFF1840	0.26	-0.6
1,862,005	-		GFF1840	0.26	+0.1
1,862,005	-		GFF1840	0.26	+0.3
1,862,005	-		GFF1840	0.26	-0.5
1,862,007	+		GFF1840	0.26	+1.8
1,862,025	+		GFF1840	0.27	+0.0
1,862,044	+		GFF1840	0.28	-1.6
1,862,044	+		GFF1840	0.28	-0.3
1,862,052	-		GFF1840	0.28	+0.3
1,862,052	-		GFF1840	0.28	-1.1
1,862,062	-		GFF1840	0.29	+0.3
1,862,077	+		GFF1840	0.29	-0.0
1,862,077	-		GFF1840	0.29	-0.4
1,862,092	+		GFF1840	0.30	-0.4
1,862,094	-		GFF1840	0.30	+0.7
1,862,107	+		GFF1840	0.30	-0.1
1,862,107	+		GFF1840	0.30	-1.1
1,862,107	+		GFF1840	0.30	-1.7
1,862,107	+		GFF1840	0.30	-0.4
1,862,107	+		GFF1840	0.30	+0.3
1,862,107	+		GFF1840	0.30	-0.3
1,862,107	+		GFF1840	0.30	+1.1
1,862,114	-		GFF1840	0.31	+0.3
1,862,115	-		GFF1840	0.31	+0.1
1,862,115	-		GFF1840	0.31	+0.6
1,862,115	-		GFF1840	0.31	-0.3
1,862,115	-		GFF1840	0.31	+0.4
1,862,115	-		GFF1840	0.31	-2.4
1,862,121	+		GFF1840	0.31	-0.3