Strain Fitness in Sphingobium sp. HT1-2 around GFF1827

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,846,126	+				+0.1
1,846,129	-				-2.3
1,846,147	+				-1.0
1,846,161	-				+0.8
1,846,187	-				-0.6
1,846,193	-				+0.5
1,846,197	-				-0.4
1,846,222	-				-0.4
1,846,229	+				-2.5
1,846,229	+				-0.6
1,846,229	+				-0.4
1,846,229	+				-0.7
1,846,229	+				+0.1
1,846,237	-				-0.7
1,846,237	-				-0.4
1,846,237	-				-2.0
1,846,237	-				+0.7
1,846,309	+				+0.3
1,846,309	+				+0.5
1,846,309	+				-0.0
1,846,309	+				-0.4
1,846,309	+				-1.1
1,846,309	+				-1.9
1,846,309	+				+0.8
1,846,309	+				-1.5
1,846,309	+				-0.8
1,846,309	+				-1.0
1,846,309	+				+0.2
1,846,309	+				+0.5
1,846,309	+				-1.3
1,846,309	+				-0.2
1,846,309	+				+0.5
1,846,309	+				-0.7
1,846,309	+				+1.1
1,846,309	+				-0.9
1,846,309	+				+0.3
1,846,309	+				-0.5
1,846,317	-				-0.3
1,846,317	-				-0.7
1,846,317	-				-0.5
1,846,317	-				-0.7
1,846,317	-				+0.4
1,846,317	-				+0.2
1,846,317	-				+1.1
1,846,317	-				-0.7
1,846,317	-				-0.7
1,846,317	-				-0.0
1,846,317	-				-0.1
1,846,319	+				-1.2
1,846,319	+				-0.7
1,846,327	-				+0.0
1,846,329	-				-2.9
1,846,329	-				-0.5
1,846,329	-				+1.3
1,846,329	-				-2.3
1,846,329	-				-0.2
1,846,329	-				+1.8
1,846,330	+				+1.2
1,846,330	+				-0.3
1,846,338	+				+0.0
1,846,338	-				-0.6
1,846,338	-				-0.9
1,846,340	+				+0.5
1,846,345	+				+0.1
1,846,345	+				-0.8
1,846,346	-				-0.0
1,846,353	-				+0.9
1,846,353	-				+1.1
1,846,373	+				-0.5
1,846,373	+				-1.1
1,846,381	-				+0.4
1,846,439	-		GFF1826	0.12	-0.1
1,846,475	+		GFF1826	0.17	-0.7
1,846,483	+		GFF1826	0.18	+1.7
1,846,483	-		GFF1826	0.18	+0.2
1,846,496	+		GFF1826	0.20	+0.8
1,846,504	-		GFF1826	0.21	-1.4
1,846,504	-		GFF1826	0.21	-0.2
1,846,509	-		GFF1826	0.22	-0.8
1,846,509	-		GFF1826	0.22	-2.0
1,846,514	-		GFF1826	0.23	+1.2
1,846,532	-		GFF1826	0.26	+0.4
1,846,543	+		GFF1826	0.27	+1.0
1,846,543	+		GFF1826	0.27	+0.3
1,846,543	+		GFF1826	0.27	+0.6
1,846,543	+		GFF1826	0.27	-0.1
1,846,543	+		GFF1826	0.27	+1.6
1,846,543	+		GFF1826	0.27	+0.5
1,846,551	-		GFF1826	0.28	-1.2
1,846,551	-		GFF1826	0.28	-0.5
1,846,551	-		GFF1826	0.28	-0.9
1,846,551	-		GFF1826	0.28	-1.1
1,846,551	-		GFF1826	0.28	+0.5
1,846,566	-		GFF1826	0.31	+0.2
1,846,615	-		GFF1826	0.38	-0.8
1,846,625	-		GFF1826	0.40	-0.5
1,846,638	+		GFF1826	0.42	+0.8
1,846,646	+		GFF1826	0.43	-0.6
1,846,646	+		GFF1826	0.43	-0.9
1,846,647	-		GFF1826	0.43	-1.6
1,846,652	-		GFF1826	0.44	-1.7
1,846,654	-		GFF1826	0.44	-0.7
1,846,654	-		GFF1826	0.44	-0.6
1,846,654	-		GFF1826	0.44	+0.0
1,846,654	-		GFF1826	0.44	-0.7
1,846,663	-		GFF1826	0.45	+2.2
1,846,672	+		GFF1826	0.47	+0.1
1,846,688	+		GFF1826	0.49	+0.7
1,846,693	+		GFF1826	0.50	+0.8
1,846,695	-		GFF1826	0.50	-0.5
1,846,714	+		GFF1826	0.53	+0.1
1,846,714	-		GFF1826	0.53	-1.0
1,846,722	-		GFF1826	0.54	+0.4
1,846,722	-		GFF1826	0.54	-0.1
1,846,722	-		GFF1826	0.54	-1.3
1,846,726	-		GFF1826	0.55	-0.1
1,846,733	-		GFF1826	0.56	-1.5
1,846,736	-		GFF1826	0.57	+0.2
1,846,767	-		GFF1826	0.61	-0.3
1,846,774	+		GFF1826	0.62	-0.9
1,846,774	-		GFF1826	0.62	+1.4
1,846,786	+		GFF1826	0.64	-0.5
1,846,798	+		GFF1826	0.66	-0.3
1,846,808	-		GFF1826	0.67	+0.4
1,846,816	+		GFF1826	0.69	-0.7
1,846,816	+		GFF1826	0.69	-0.7
1,846,826	+		GFF1826	0.70	-1.8
1,846,839	-		GFF1826	0.72	+0.1
1,846,839	-		GFF1826	0.72	-0.6
1,846,843	+		GFF1826	0.73	-1.5
1,846,846	-		GFF1826	0.73	-1.4
1,846,846	-		GFF1826	0.73	+0.2
1,846,848	+		GFF1826	0.73	-1.0
1,846,851	-		GFF1826	0.74	-0.4
1,846,853	+		GFF1826	0.74	-1.1
1,846,853	+		GFF1826	0.74	-0.3
1,846,877	+		GFF1826	0.78	-0.2
1,846,924	-		GFF1826	0.85	+0.1
1,846,926	+		GFF1826	0.85	-0.6
1,846,927	-		GFF1826	0.85	-0.2
1,846,934	-		GFF1826	0.87	+0.1
1,846,934	-		GFF1826	0.87	+1.1
1,846,956	-		GFF1826	0.90	-1.5
1,846,989	+				-1.3
1,846,997	-				+0.1
1,847,004	+				-0.0
1,847,016	+				-0.1
1,847,016	+				-0.1
1,847,016	+				-1.9
1,847,016	+				-0.2
1,847,016	+				-0.8
1,847,016	+				+1.3
1,847,021	+				-0.0
1,847,024	-				-1.2
1,847,024	-				+0.2
1,847,024	-				-0.8
1,847,024	-				-0.8
1,847,024	-				+0.7
1,847,024	-				+0.9
1,847,024	-				-1.5
1,847,026	+				-0.3
1,847,026	+				-0.6
1,847,052	-				-0.5
1,847,054	-				+0.6
1,847,065	+				+0.4
1,847,065	+				+0.9
1,847,065	+				+1.0
1,847,065	+				-0.5
1,847,065	-				+0.3
1,847,073	+				-0.4
1,847,073	+				+0.3
1,847,073	-				+0.7
1,847,073	-				-0.3
1,847,075	+				+0.1
1,847,081	-				-2.0
1,847,087	+				-0.1
1,847,090	+				+1.1
1,847,090	+				-1.5
1,847,144	+				+0.7
1,847,161	+				-1.1
1,847,174	-				+0.3
1,847,194	-				-0.5
1,847,217	+		GFF1827	0.12	-0.3
1,847,223	-		GFF1827	0.13	+0.2
1,847,223	-		GFF1827	0.13	+0.0
1,847,223	-		GFF1827	0.13	-2.0
1,847,224	+		GFF1827	0.13	+0.2
1,847,224	+		GFF1827	0.13	-0.4
1,847,226	+		GFF1827	0.13	+0.1
1,847,226	+		GFF1827	0.13	-0.6
1,847,234	+		GFF1827	0.14	-0.0
1,847,234	-		GFF1827	0.14	-0.4
1,847,234	-		GFF1827	0.14	-1.1
1,847,234	-		GFF1827	0.14	-0.3
1,847,239	+		GFF1827	0.15	-0.4
1,847,254	+		GFF1827	0.16	-1.6
1,847,260	+		GFF1827	0.17	+0.0
1,847,262	-		GFF1827	0.17	+0.9
1,847,276	+		GFF1827	0.19	+0.0
1,847,276	+		GFF1827	0.19	-1.4
1,847,276	+		GFF1827	0.19	+0.5
1,847,276	+		GFF1827	0.19	-0.1
1,847,285	-		GFF1827	0.20	-1.2
1,847,285	-		GFF1827	0.20	-1.1
1,847,300	-		GFF1827	0.22	+0.9
1,847,306	+		GFF1827	0.23	+0.6
1,847,306	+		GFF1827	0.23	-2.3
1,847,306	+		GFF1827	0.23	+0.3
1,847,306	+		GFF1827	0.23	-1.0
1,847,306	+		GFF1827	0.23	-0.5
1,847,306	+		GFF1827	0.23	+0.3
1,847,306	+		GFF1827	0.23	+0.4
1,847,306	+		GFF1827	0.23	+1.1
1,847,306	+		GFF1827	0.23	-2.1
1,847,311	+		GFF1827	0.23	-0.6
1,847,311	+		GFF1827	0.23	+0.2
1,847,311	+		GFF1827	0.23	-1.3
1,847,314	-		GFF1827	0.24	-0.4
1,847,314	-		GFF1827	0.24	-0.8
1,847,314	-		GFF1827	0.24	-0.3
1,847,314	-		GFF1827	0.24	+0.7
1,847,314	-		GFF1827	0.24	+0.1
1,847,314	-		GFF1827	0.24	+0.6
1,847,314	-		GFF1827	0.24	-2.3
1,847,314	-		GFF1827	0.24	-2.1
1,847,314	-		GFF1827	0.24	+0.3
1,847,314	-		GFF1827	0.24	-0.2
1,847,319	-		GFF1827	0.24	+0.2
1,847,321	+		GFF1827	0.24	+0.6
1,847,321	+		GFF1827	0.24	+0.1
1,847,321	+		GFF1827	0.24	-1.3
1,847,322	+		GFF1827	0.24	+1.7
1,847,329	-		GFF1827	0.25	-0.4
1,847,329	-		GFF1827	0.25	-1.2
1,847,329	-		GFF1827	0.25	+0.1
1,847,329	-		GFF1827	0.25	+0.6
1,847,329	-		GFF1827	0.25	-0.1
1,847,329	-		GFF1827	0.25	+0.7
1,847,329	-		GFF1827	0.25	-0.2
1,847,329	-		GFF1827	0.25	+0.1
1,847,333	+		GFF1827	0.26	-2.6
1,847,341	-		GFF1827	0.27	-0.7
1,847,378	-		GFF1827	0.31	+1.2
1,847,442	+		GFF1827	0.39	-0.2
1,847,442	+		GFF1827	0.39	+0.9
1,847,452	+		GFF1827	0.40	+1.1
1,847,453	+		GFF1827	0.40	-0.0
1,847,467	+		GFF1827	0.42	+1.5
1,847,472	+		GFF1827	0.42	-0.1
1,847,475	-		GFF1827	0.43	-0.7
1,847,475	-		GFF1827	0.43	+0.1
1,847,475	-		GFF1827	0.43	-1.6
1,847,477	+		GFF1827	0.43	-0.7
1,847,477	+		GFF1827	0.43	-0.5
1,847,477	+		GFF1827	0.43	+0.8
1,847,477	+		GFF1827	0.43	-0.0
1,847,482	+		GFF1827	0.44	-0.0
1,847,485	-		GFF1827	0.44	-1.4
1,847,485	-		GFF1827	0.44	-2.0
1,847,485	-		GFF1827	0.44	+0.1
1,847,487	+		GFF1827	0.44	-0.4
1,847,487	+		GFF1827	0.44	+0.3
1,847,487	+		GFF1827	0.44	-0.1
1,847,490	-		GFF1827	0.45	+0.6
1,847,495	-		GFF1827	0.45	-0.9
1,847,495	-		GFF1827	0.45	-1.1
1,847,495	-		GFF1827	0.45	-0.5
1,847,495	-		GFF1827	0.45	-1.7
1,847,506	+		GFF1827	0.46	+0.4
1,847,506	+		GFF1827	0.46	-0.0
1,847,506	+		GFF1827	0.46	-1.4
1,847,514	-		GFF1827	0.47	+0.0
1,847,514	-		GFF1827	0.47	-0.2
1,847,514	-		GFF1827	0.47	+1.2
1,847,514	-		GFF1827	0.47	-0.7
1,847,518	+		GFF1827	0.48	+0.4
1,847,531	+		GFF1827	0.49	-0.4
1,847,536	+		GFF1827	0.50	+0.7
1,847,536	+		GFF1827	0.50	+0.5
1,847,544	-		GFF1827	0.51	+1.1
1,847,544	-		GFF1827	0.51	-0.7
1,847,546	-		GFF1827	0.51	+0.2
1,847,550	+		GFF1827	0.52	-0.6
1,847,551	-		GFF1827	0.52	+0.1
1,847,581	-		GFF1827	0.55	-0.4
1,847,601	-		GFF1827	0.58	+1.3
1,847,604	-		GFF1827	0.58	-0.8
1,847,625	-		GFF1827	0.61	-1.0
1,847,632	-		GFF1827	0.62	-0.6
1,847,654	-		GFF1827	0.64	-1.0
1,847,655	-		GFF1827	0.64	+0.3
1,847,655	-		GFF1827	0.64	-0.2
1,847,678	+		GFF1827	0.67	+0.4
1,847,693	-		GFF1827	0.69	-1.6
1,847,700	-		GFF1827	0.70	-0.9
1,847,705	-		GFF1827	0.70	-1.8
1,847,727	-		GFF1827	0.73	-0.4
1,847,727	-		GFF1827	0.73	+0.7
1,847,771	+		GFF1827	0.78	-0.1
1,847,777	+		GFF1827	0.79	-2.6
1,847,779	-		GFF1827	0.79	-1.0
1,847,779	-		GFF1827	0.79	-1.3
1,847,786	-		GFF1827	0.80	+1.3
1,847,786	-		GFF1827	0.80	+0.7
1,847,786	-		GFF1827	0.80	-0.1
1,847,807	+		GFF1827	0.82	+0.5
1,847,807	+		GFF1827	0.82	-0.6
1,847,807	+		GFF1827	0.82	-0.9
1,847,808	-		GFF1827	0.83	-0.5
1,847,809	-		GFF1827	0.83	-0.2
1,847,814	-		GFF1827	0.83	+0.9
1,847,814	-		GFF1827	0.83	-0.0
1,847,815	-		GFF1827	0.83	-0.2
1,847,823	-		GFF1827	0.84	-1.0
1,847,840	+		GFF1827	0.86	-0.1
1,847,863	+		GFF1827	0.89	+0.8
1,847,864	-		GFF1827	0.89	+0.3
1,847,878	+				+0.1
1,847,905	+				+0.6
1,847,923	-				+0.3
1,847,923	-				-0.7
1,847,937	+				+0.1
1,847,942	+				-0.1
1,847,942	+				+0.3
1,847,942	+				+0.8
1,847,945	-				+0.1
1,847,945	-				+0.6
1,847,945	-				-2.6
1,847,950	-				+0.8
1,847,955	-				-0.5
1,847,968	-				-1.5
1,847,988	+				-1.4
1,848,083	+		GFF1828	0.41	-0.9
1,848,086	+		GFF1828	0.42	-2.5
1,848,125	+		GFF1828	0.57	-0.1
1,848,125	+		GFF1828	0.57	-1.4
1,848,133	-		GFF1828	0.60	+0.3
1,848,139	+		GFF1828	0.62	-1.4
1,848,139	+		GFF1828	0.62	+1.7
1,848,139	+		GFF1828	0.62	+1.9
1,848,139	+		GFF1828	0.62	-1.4
1,848,139	+		GFF1828	0.62	-0.3
1,848,139	+		GFF1828	0.62	-0.1
1,848,139	+		GFF1828	0.62	+0.2
1,848,139	+		GFF1828	0.62	+0.7
1,848,144	+		GFF1828	0.64	+0.1
1,848,147	-		GFF1828	0.66	-2.8
1,848,147	-		GFF1828	0.66	+1.1
1,848,147	-		GFF1828	0.66	-1.9
1,848,147	-		GFF1828	0.66	-0.5
1,848,149	+		GFF1828	0.66	-0.9
1,848,152	-		GFF1828	0.67	+0.3
1,848,157	-		GFF1828	0.69	+0.7
1,848,157	-		GFF1828	0.69	-0.7
1,848,178	+		GFF1828	0.77	+0.6
1,848,178	+		GFF1828	0.77	+1.7
1,848,178	+		GFF1828	0.77	+0.7
1,848,178	+		GFF1828	0.77	+0.9
1,848,178	+		GFF1828	0.77	-0.8
1,848,186	-		GFF1828	0.80	+1.1
1,848,186	-		GFF1828	0.80	+0.3
1,848,195	+		GFF1828	0.84	-0.4
1,848,195	+		GFF1828	0.84	+0.3
1,848,203	-		GFF1828	0.87	-1.0
1,848,203	-		GFF1828	0.87	+0.2
1,848,242	-				+0.6
1,848,278	+				+1.7
1,848,278	-				+0.7
1,848,280	+				-1.8
1,848,283	-				-0.7
1,848,289	-				-0.6
1,848,297	-				-0.0
1,848,301	+				-0.0
1,848,309	-				-0.4
1,848,313	+				+0.9
1,848,321	-				-0.8
1,848,321	-				+0.1
1,848,337	-				+0.0
1,848,346	+				+0.2
1,848,358	+				-0.6
1,848,364	+				-1.3
1,848,364	+				+0.0
1,848,364	+				+1.5
1,848,364	+				+0.1
1,848,364	+				-0.9
1,848,364	+				+0.3
1,848,372	-				-0.5
1,848,372	-				-0.3
1,848,372	-				-0.2
1,848,386	+				-0.5
1,848,407	+				+0.6
1,848,421	-				+0.1
1,848,426	+		GFF1829	0.10	-0.7
1,848,434	-		GFF1829	0.10	-0.4
1,848,453	+		GFF1829	0.11	-0.9
1,848,461	-		GFF1829	0.12	-0.0
1,848,489	+		GFF1829	0.13	+0.1
1,848,497	-		GFF1829	0.14	-0.6
1,848,507	+		GFF1829	0.14	-0.7
1,848,515	-		GFF1829	0.15	+1.2
1,848,515	-		GFF1829	0.15	-1.7
1,848,515	-		GFF1829	0.15	-0.5
1,848,515	-		GFF1829	0.15	+0.9
1,848,543	+		GFF1829	0.16	-0.7
1,848,556	-		GFF1829	0.17	+0.5
1,848,566	-		GFF1829	0.17	-1.2
1,848,585	-		GFF1829	0.18	-0.0
1,848,585	-		GFF1829	0.18	-1.2
1,848,585	-		GFF1829	0.18	+0.2
1,848,609	-		GFF1829	0.19	+0.8
1,848,623	+		GFF1829	0.20	+0.2
1,848,626	-		GFF1829	0.20	-0.7
1,848,633	+		GFF1829	0.21	-0.6
1,848,633	+		GFF1829	0.21	+1.1
1,848,641	-		GFF1829	0.21	-0.6
1,848,659	+		GFF1829	0.22	+0.6
1,848,700	+		GFF1829	0.24	-1.9
1,848,700	+		GFF1829	0.24	-1.2
1,848,700	+		GFF1829	0.24	-1.3
1,848,716	-		GFF1829	0.25	+0.0
1,848,727	+		GFF1829	0.26	+0.0
1,848,729	+		GFF1829	0.26	-0.2
1,848,735	+		GFF1829	0.26	-1.8
1,848,735	-		GFF1829	0.26	+0.3
1,848,737	-		GFF1829	0.26	+0.3
1,848,743	+		GFF1829	0.26	-1.6
1,848,751	-		GFF1829	0.27	-0.7
1,848,758	+		GFF1829	0.27	+0.3
1,848,758	+		GFF1829	0.27	+1.0
1,848,760	+		GFF1829	0.27	-0.0
1,848,760	+		GFF1829	0.27	-1.3
1,848,760	+		GFF1829	0.27	-2.3
1,848,760	+		GFF1829	0.27	-0.3
1,848,766	-		GFF1829	0.28	+0.6
1,848,768	+		GFF1829	0.28	-0.9
1,848,768	-		GFF1829	0.28	+0.3
1,848,768	-		GFF1829	0.28	-2.3
1,848,768	-		GFF1829	0.28	-1.1
1,848,768	-		GFF1829	0.28	-0.9
1,848,768	-		GFF1829	0.28	+1.0
1,848,768	-		GFF1829	0.28	-1.3
1,848,787	+		GFF1829	0.29	+0.3
1,848,787	+		GFF1829	0.29	+0.9
1,848,791	-		GFF1829	0.29	+0.3
1,848,792	+		GFF1829	0.29	-0.0
1,848,792	+		GFF1829	0.29	-0.3
1,848,796	-		GFF1829	0.29	-1.5
1,848,800	-		GFF1829	0.29	-0.3
1,848,802	-		GFF1829	0.29	+0.0
1,848,804	+		GFF1829	0.30	-0.0
1,848,804	+		GFF1829	0.30	-1.3
1,848,807	-		GFF1829	0.30	+0.1
1,848,812	-		GFF1829	0.30	-1.6
1,848,820	+		GFF1829	0.30	-0.5
1,848,869	+		GFF1829	0.33	+0.5
1,848,874	+		GFF1829	0.33	+1.1
1,848,874	+		GFF1829	0.33	+0.7
1,848,877	-		GFF1829	0.33	+0.3
1,848,882	-		GFF1829	0.34	-0.9
1,848,889	+		GFF1829	0.34	+1.2
1,848,894	+		GFF1829	0.34	+0.5
1,848,894	+		GFF1829	0.34	+0.0
1,848,894	+		GFF1829	0.34	+0.7
1,848,899	+		GFF1829	0.35	-0.1
1,848,900	-		GFF1829	0.35	+1.3
1,848,900	-		GFF1829	0.35	+0.5
1,848,902	-		GFF1829	0.35	+0.4
1,848,902	-		GFF1829	0.35	-2.2
1,848,902	-		GFF1829	0.35	+0.1
1,848,904	+		GFF1829	0.35	-0.4
1,848,907	-		GFF1829	0.35	-0.2
1,848,912	+		GFF1829	0.35	-0.7
1,848,912	-		GFF1829	0.35	-2.1
1,848,912	-		GFF1829	0.35	+0.1
1,848,912	-		GFF1829	0.35	-0.3
1,848,920	-		GFF1829	0.36	-1.0
1,848,920	-		GFF1829	0.36	-0.6
1,848,937	+		GFF1829	0.36	-0.4
1,848,945	-		GFF1829	0.37	+0.6