Strain Fitness in Sphingobium sp. HT1-2 around GFF1801

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,822,338	-		GFF1800	0.52	-1.0
1,822,374	-		GFF1800	0.54	-0.6
1,822,386	+		GFF1800	0.55	-0.1
1,822,395	+		GFF1800	0.55	-0.4
1,822,439	+		GFF1800	0.58	+0.2
1,822,448	-		GFF1800	0.58	+0.0
1,822,453	-		GFF1800	0.59	-0.6
1,822,465	+		GFF1800	0.59	-0.6
1,822,467	+		GFF1800	0.59	+0.9
1,822,467	+		GFF1800	0.59	-0.4
1,822,467	+		GFF1800	0.59	-1.2
1,822,467	+		GFF1800	0.59	-1.5
1,822,475	-		GFF1800	0.60	+1.0
1,822,475	-		GFF1800	0.60	+0.5
1,822,486	+		GFF1800	0.60	-1.0
1,822,499	+		GFF1800	0.61	+0.2
1,822,522	+		GFF1800	0.62	+0.0
1,822,529	+		GFF1800	0.63	-1.9
1,822,530	-		GFF1800	0.63	-0.2
1,822,535	+		GFF1800	0.63	-1.5
1,822,535	+		GFF1800	0.63	-1.5
1,822,543	-		GFF1800	0.64	-1.5
1,822,580	+		GFF1800	0.66	+0.3
1,822,580	+		GFF1800	0.66	-0.2
1,822,580	+		GFF1800	0.66	-0.2
1,822,587	+		GFF1800	0.66	-1.5
1,822,588	-		GFF1800	0.66	-0.2
1,822,590	+		GFF1800	0.66	-1.7
1,822,595	-		GFF1800	0.67	-0.0
1,822,649	+		GFF1800	0.69	-0.8
1,822,649	+		GFF1800	0.69	+0.9
1,822,649	+		GFF1800	0.69	-0.3
1,822,649	+		GFF1800	0.69	-0.2
1,822,649	+		GFF1800	0.69	-0.7
1,822,649	+		GFF1800	0.69	+0.2
1,822,649	+		GFF1800	0.69	-0.9
1,822,649	+		GFF1800	0.69	+1.3
1,822,653	+		GFF1800	0.70	-1.7
1,822,657	-		GFF1800	0.70	+0.3
1,822,657	-		GFF1800	0.70	-0.3
1,822,657	-		GFF1800	0.70	-1.0
1,822,657	-		GFF1800	0.70	-1.3
1,822,657	-		GFF1800	0.70	-0.2
1,822,657	-		GFF1800	0.70	-0.1
1,822,663	-		GFF1800	0.70	-1.5
1,822,689	-		GFF1800	0.72	-0.4
1,822,693	+		GFF1800	0.72	+0.6
1,822,696	-		GFF1800	0.72	-0.4
1,822,696	-		GFF1800	0.72	+0.3
1,822,698	+		GFF1800	0.72	+1.7
1,822,703	+		GFF1800	0.72	-1.2
1,822,703	+		GFF1800	0.72	-0.5
1,822,703	+		GFF1800	0.72	-0.1
1,822,711	-		GFF1800	0.73	-0.5
1,822,712	-		GFF1800	0.73	-0.6
1,822,712	-		GFF1800	0.73	-1.7
1,822,744	+		GFF1800	0.75	-0.5
1,822,771	-		GFF1800	0.76	-1.7
1,822,771	-		GFF1800	0.76	-1.8
1,822,813	-		GFF1800	0.79	-1.1
1,822,834	+		GFF1800	0.80	+0.5
1,822,848	+		GFF1800	0.81	-1.9
1,822,848	+		GFF1800	0.81	+0.2
1,822,848	+		GFF1800	0.81	+0.0
1,822,848	+		GFF1800	0.81	+1.1
1,822,877	-		GFF1800	0.82	-2.2
1,822,891	+		GFF1800	0.83	-0.0
1,822,893	+		GFF1800	0.83	-0.7
1,822,893	+		GFF1800	0.83	-0.0
1,822,893	+		GFF1800	0.83	+1.8
1,822,901	-		GFF1800	0.83	+0.1
1,822,901	-		GFF1800	0.83	-0.7
1,822,901	-		GFF1800	0.83	-0.0
1,822,926	+		GFF1800	0.85	+0.1
1,822,932	+		GFF1800	0.85	-0.0
1,822,933	+		GFF1800	0.85	-0.0
1,822,940	+		GFF1800	0.86	-2.7
1,822,945	+		GFF1800	0.86	-1.4
1,822,948	-		GFF1800	0.86	-0.4
1,822,948	-		GFF1800	0.86	+0.1
1,822,948	-		GFF1800	0.86	-0.4
1,822,950	+		GFF1800	0.86	-0.6
1,822,953	-		GFF1800	0.86	+0.3
1,822,953	-		GFF1800	0.86	-1.0
1,822,964	+		GFF1800	0.87	+0.3
1,823,041	+				-2.1
1,823,041	+				-0.3
1,823,049	-				-1.8
1,823,049	-				-0.3
1,823,053	-				+0.6
1,823,091	+				-0.1
1,823,093	-				-0.4
1,823,121	+				+1.4
1,823,125	+				-0.7
1,823,133	-				+0.5
1,823,133	-				-0.0
1,823,142	+				-0.9
1,823,193	+				-0.1
1,823,193	+				-0.3
1,823,193	+				-0.1
1,823,193	+				+0.4
1,823,193	+				+0.2
1,823,193	+				+0.6
1,823,193	+				-0.9
1,823,201	-				-0.2
1,823,201	-				-0.1
1,823,201	-				+0.2
1,823,201	-				-1.1
1,823,201	-				+0.8
1,823,201	-				-0.5
1,823,232	+				-1.5
1,823,232	-				-1.1
1,823,250	-				+0.3
1,823,260	-				-0.3
1,823,260	-				-0.8
1,823,273	+				-0.8
1,823,273	+				-0.7
1,823,335	+				-0.9
1,823,335	+				-0.1
1,823,335	+				-1.9
1,823,335	+				-2.2
1,823,335	+				+0.1
1,823,343	-				-0.5
1,823,346	+				+0.3
1,823,349	-				-0.6
1,823,363	+		GFF1801	0.16	+1.2
1,823,371	-		GFF1801	0.19	+1.1
1,823,376	+		GFF1801	0.21	+0.7
1,823,376	+		GFF1801	0.21	-0.7
1,823,383	+		GFF1801	0.24	-0.5
1,823,383	-		GFF1801	0.24	+0.7
1,823,395	+		GFF1801	0.30	+0.1
1,823,405	+		GFF1801	0.34	+1.2
1,823,405	+		GFF1801	0.34	-0.2
1,823,418	-		GFF1801	0.40	-0.2
1,823,423	-		GFF1801	0.42	-0.4
1,823,430	+		GFF1801	0.45	-1.4
1,823,435	+		GFF1801	0.48	-0.0
1,823,435	+		GFF1801	0.48	-0.3
1,823,438	-		GFF1801	0.49	-0.4
1,823,438	-		GFF1801	0.49	+0.1
1,823,438	-		GFF1801	0.49	+1.1
1,823,448	-		GFF1801	0.53	-0.7
1,823,448	-		GFF1801	0.53	+0.1
1,823,453	-		GFF1801	0.56	+1.6
1,823,453	-		GFF1801	0.56	+0.4
1,823,453	-		GFF1801	0.56	-1.3
1,823,453	-		GFF1801	0.56	+0.4
1,823,455	+		GFF1801	0.56	-1.8
1,823,455	+		GFF1801	0.56	+0.3
1,823,455	+		GFF1801	0.56	+0.1
1,823,455	+		GFF1801	0.56	+0.2
1,823,455	+		GFF1801	0.56	-1.6
1,823,455	+		GFF1801	0.56	+0.0
1,823,455	+		GFF1801	0.56	+0.6
1,823,455	+		GFF1801	0.56	-0.1
1,823,455	+		GFF1801	0.56	-0.8
1,823,455	+		GFF1801	0.56	-0.1
1,823,455	+		GFF1801	0.56	-3.1
1,823,455	+		GFF1801	0.56	-0.3
1,823,455	+		GFF1801	0.56	+1.2
1,823,455	+		GFF1801	0.56	-1.9
1,823,462	+		GFF1801	0.60	+0.3
1,823,463	-		GFF1801	0.60	-0.7
1,823,463	-		GFF1801	0.60	-0.8
1,823,463	-		GFF1801	0.60	-0.3
1,823,463	-		GFF1801	0.60	-0.8
1,823,463	-		GFF1801	0.60	-0.7
1,823,463	-		GFF1801	0.60	-0.8
1,823,463	-		GFF1801	0.60	-1.3
1,823,485	+		GFF1801	0.70	+0.2
1,823,498	-		GFF1801	0.76	+0.6
1,823,498	-		GFF1801	0.76	+1.4
1,823,515	+		GFF1801	0.83	-2.0
1,823,515	+		GFF1801	0.83	-0.0
1,823,515	+		GFF1801	0.83	-0.3
1,823,515	+		GFF1801	0.83	-0.3
1,823,515	+		GFF1801	0.83	-2.1
1,823,523	-		GFF1801	0.87	-2.2
1,823,523	-		GFF1801	0.87	-0.5
1,823,523	-		GFF1801	0.87	-0.4
1,823,523	-		GFF1801	0.87	+0.7
1,823,523	-		GFF1801	0.87	+0.1
1,823,523	-		GFF1801	0.87	-0.2
1,823,556	+				-0.8
1,823,556	+				+0.3
1,823,562	-				-1.6
1,823,562	-				-1.4
1,823,564	+				-1.8
1,823,564	+				-1.6
1,823,572	-				+0.9
1,823,595	+				+0.9
1,823,620	+				-0.8
1,823,623	+				-0.3
1,823,624	+				-2.1
1,823,631	+				+0.5
1,823,631	+				-0.9
1,823,631	+				-2.3
1,823,631	+				+0.3
1,823,631	+				+1.1
1,823,632	-				-0.1
1,823,632	-				-0.7
1,823,639	-				+0.3
1,823,639	-				+0.3
1,823,643	+				-1.5
1,823,650	+				+0.0
1,823,650	+				-0.2
1,823,651	-				-2.6
1,823,658	-				-0.6
1,823,668	+				-0.2
1,823,676	-				-1.7
1,823,678	+				-0.1
1,823,678	+				-0.0
1,823,678	+				+1.4
1,823,678	+				-2.1
1,823,685	+				-1.6
1,823,686	-				-0.7
1,823,686	-				+0.1
1,823,686	-				-0.4
1,823,686	-				-1.1
1,823,693	+				-1.1
1,823,693	-				-0.3
1,823,693	-				+0.4
1,823,700	+				+0.8
1,823,748	-				+0.6
1,823,770	+				-0.1
1,823,780	+				-0.1
1,823,808	-				-0.3
1,823,831	-				+0.6
1,823,833	-				-3.0
1,823,833	-				-0.9
1,823,833	-				-1.8
1,823,833	-				+0.3
1,823,833	-				+0.8
1,823,910	+				+0.8
1,823,910	+				-2.8
1,823,910	+				+0.8
1,823,910	+				+0.7
1,823,910	+				-0.7
1,823,921	+				+1.1
1,823,921	+				-1.3
1,823,921	+				-1.3
1,823,921	+				+0.5
1,823,934	+				-2.0
1,823,966	+				+0.6
1,823,966	+				-0.3
1,823,966	+				+0.2
1,823,966	+				-0.0
1,823,971	+				-1.0
1,823,974	-				-0.2
1,823,974	-				-2.5
1,824,035	-				-1.3
1,824,056	+				+1.1
1,824,080	+				-1.3
1,824,086	-				-0.7
1,824,092	+				+1.1
1,824,094	+				-0.3
1,824,102	+				-0.4
1,824,102	+				-0.4
1,824,102	+				+0.7
1,824,102	+				-1.3
1,824,102	+				+0.1
1,824,102	+				-2.5
1,824,102	+				-0.3
1,824,102	+				-0.3
1,824,102	+				-0.7
1,824,102	+				+0.0
1,824,102	+				-0.1
1,824,102	+				-0.1
1,824,102	+				+0.2
1,824,102	+				-0.4
1,824,102	+				+0.0
1,824,102	+				-0.6
1,824,102	+				+0.8
1,824,102	-				-0.0
1,824,110	-				+1.0
1,824,110	-				-1.4
1,824,110	-				-0.3
1,824,110	-				+1.0
1,824,110	-				-0.5
1,824,110	-				-1.1
1,824,110	-				+0.7
1,824,110	-				+0.1
1,824,110	-				-1.3
1,824,110	-				-1.4
1,824,110	-				-0.1
1,824,110	-				-0.6
1,824,110	-				-0.6
1,824,110	-				+0.6
1,824,110	-				-1.4
1,824,110	-				-0.2
1,824,110	-				-0.4
1,824,114	+				-0.5
1,824,114	+				+0.8
1,824,114	+				-1.1
1,824,114	+				+0.7
1,824,120	-				+0.5
1,824,121	+				-0.0
1,824,139	-				-2.9
1,824,143	+				+0.8
1,824,149	-				+0.4
1,824,149	-				-0.7
1,824,151	-				-1.4
1,824,153	+				-0.6
1,824,156	-				-0.2
1,824,192	+				+0.2
1,824,196	+				-0.1
1,824,267	+		GFF1802	0.17	-1.0
1,824,286	+		GFF1802	0.19	-0.3
1,824,286	+		GFF1802	0.19	-1.1
1,824,293	+		GFF1802	0.20	-3.1
1,824,293	+		GFF1802	0.20	-0.5
1,824,293	+		GFF1802	0.20	-0.4
1,824,293	+		GFF1802	0.20	+0.2
1,824,294	-		GFF1802	0.20	+1.1
1,824,301	-		GFF1802	0.21	-0.5
1,824,301	-		GFF1802	0.21	-2.1
1,824,303	+		GFF1802	0.21	-0.5
1,824,306	-		GFF1802	0.21	-2.9
1,824,313	+		GFF1802	0.22	-0.1
1,824,314	+		GFF1802	0.22	-0.9
1,824,321	-		GFF1802	0.23	+0.3
1,824,375	-		GFF1802	0.29	-1.5
1,824,406	-		GFF1802	0.32	-0.6
1,824,409	+		GFF1802	0.32	-1.3
1,824,414	+		GFF1802	0.33	-0.1
1,824,448	-		GFF1802	0.37	+1.4
1,824,456	-		GFF1802	0.38	-1.1
1,824,461	-		GFF1802	0.38	-0.1
1,824,473	-		GFF1802	0.39	-2.0
1,824,485	-		GFF1802	0.41	-0.8
1,824,520	+		GFF1802	0.44	+0.5
1,824,520	+		GFF1802	0.44	-1.8
1,824,520	+		GFF1802	0.44	-0.4
1,824,528	-		GFF1802	0.45	-0.2
1,824,528	-		GFF1802	0.45	-1.5
1,824,528	-		GFF1802	0.45	-2.2
1,824,532	-		GFF1802	0.46	+0.1