Strain Fitness in Sphingobium sp. HT1-2 around GFF1793

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,815,484	-		GFF1792	0.33	+0.3
1,815,484	-		GFF1792	0.33	-0.5
1,815,484	-		GFF1792	0.33	-1.6
1,815,484	-		GFF1792	0.33	-0.3
1,815,484	-		GFF1792	0.33	-0.0
1,815,489	-		GFF1792	0.33	-1.7
1,815,489	-		GFF1792	0.33	+0.5
1,815,491	+		GFF1792	0.33	-0.4
1,815,491	+		GFF1792	0.33	-1.0
1,815,499	-		GFF1792	0.34	+0.9
1,815,499	-		GFF1792	0.34	-0.3
1,815,525	-		GFF1792	0.37	-0.0
1,815,550	-		GFF1792	0.39	-0.6
1,815,594	+		GFF1792	0.44	-0.8
1,815,622	+		GFF1792	0.47	-2.3
1,815,636	+		GFF1792	0.48	+0.7
1,815,644	+		GFF1792	0.49	+0.2
1,815,659	+		GFF1792	0.51	-1.4
1,815,659	+		GFF1792	0.51	+1.0
1,815,659	+		GFF1792	0.51	+0.7
1,815,659	+		GFF1792	0.51	-0.5
1,815,659	+		GFF1792	0.51	+0.4
1,815,667	-		GFF1792	0.52	-1.2
1,815,667	-		GFF1792	0.52	-2.0
1,815,667	-		GFF1792	0.52	-1.0
1,815,667	-		GFF1792	0.52	-1.3
1,815,667	-		GFF1792	0.52	+0.1
1,815,673	+		GFF1792	0.52	-1.3
1,815,676	-		GFF1792	0.53	-0.3
1,815,678	+		GFF1792	0.53	+0.3
1,815,683	+		GFF1792	0.53	+0.0
1,815,691	-		GFF1792	0.54	+1.2
1,815,754	+		GFF1792	0.61	-0.3
1,815,769	-		GFF1792	0.62	-0.5
1,815,786	-		GFF1792	0.64	-0.4
1,815,787	-		GFF1792	0.64	+0.6
1,815,806	-		GFF1792	0.66	-0.6
1,815,843	-		GFF1792	0.70	-1.2
1,815,854	-		GFF1792	0.71	-1.7
1,815,854	-		GFF1792	0.71	-0.4
1,815,854	-		GFF1792	0.71	+1.2
1,815,856	+		GFF1792	0.71	-0.2
1,815,856	+		GFF1792	0.71	+1.1
1,815,856	+		GFF1792	0.71	+0.2
1,815,856	+		GFF1792	0.71	-1.6
1,815,856	+		GFF1792	0.71	-0.5
1,815,856	+		GFF1792	0.71	-2.1
1,815,856	+		GFF1792	0.71	-0.7
1,815,856	+		GFF1792	0.71	+0.8
1,815,856	+		GFF1792	0.71	-0.6
1,815,856	+		GFF1792	0.71	-0.8
1,815,856	+		GFF1792	0.71	+0.1
1,815,858	+		GFF1792	0.72	-1.4
1,815,864	-		GFF1792	0.72	+0.6
1,815,864	-		GFF1792	0.72	+0.7
1,815,864	-		GFF1792	0.72	+1.3
1,815,864	-		GFF1792	0.72	+0.3
1,815,864	-		GFF1792	0.72	-2.0
1,815,864	-		GFF1792	0.72	-0.4
1,815,864	-		GFF1792	0.72	-0.6
1,815,864	-		GFF1792	0.72	-2.8
1,815,864	-		GFF1792	0.72	-0.4
1,815,864	-		GFF1792	0.72	+1.3
1,815,864	-		GFF1792	0.72	-0.6
1,815,864	-		GFF1792	0.72	+0.0
1,815,866	+		GFF1792	0.73	-0.5
1,815,876	+		GFF1792	0.74	-1.0
1,815,876	+		GFF1792	0.74	-0.5
1,815,879	-		GFF1792	0.74	-1.7
1,815,881	+		GFF1792	0.74	-0.7
1,815,881	+		GFF1792	0.74	-2.3
1,815,881	+		GFF1792	0.74	-2.1
1,815,884	-		GFF1792	0.74	-0.4
1,815,884	-		GFF1792	0.74	-2.6
1,815,884	-		GFF1792	0.74	-0.4
1,815,884	-		GFF1792	0.74	-0.1
1,815,884	-		GFF1792	0.74	+0.3
1,815,884	-		GFF1792	0.74	+0.1
1,815,886	+		GFF1792	0.75	+0.3
1,815,886	+		GFF1792	0.75	-0.1
1,815,886	+		GFF1792	0.75	+0.2
1,815,886	+		GFF1792	0.75	-0.4
1,815,886	+		GFF1792	0.75	+0.3
1,815,886	+		GFF1792	0.75	-2.1
1,815,886	+		GFF1792	0.75	-0.9
1,815,886	+		GFF1792	0.75	-1.1
1,815,886	+		GFF1792	0.75	+0.7
1,815,886	+		GFF1792	0.75	-0.0
1,815,889	-		GFF1792	0.75	+1.2
1,815,889	-		GFF1792	0.75	-0.9
1,815,889	-		GFF1792	0.75	+0.7
1,815,889	-		GFF1792	0.75	-0.1
1,815,889	-		GFF1792	0.75	+0.1
1,815,889	-		GFF1792	0.75	-0.6
1,815,891	+		GFF1792	0.75	+0.3
1,815,894	-		GFF1792	0.75	-2.4
1,815,894	-		GFF1792	0.75	-1.1
1,815,894	-		GFF1792	0.75	-1.0
1,815,894	-		GFF1792	0.75	+0.6
1,815,894	-		GFF1792	0.75	-1.0
1,815,894	-		GFF1792	0.75	-0.9
1,815,911	+		GFF1792	0.77	-0.1
1,815,911	+		GFF1792	0.77	+0.2
1,815,911	+		GFF1792	0.77	+1.4
1,815,911	+		GFF1792	0.77	+0.3
1,815,911	+		GFF1792	0.77	+0.5
1,815,919	-		GFF1792	0.78	+0.3
1,815,919	-		GFF1792	0.78	-0.7
1,815,919	-		GFF1792	0.78	+1.6
1,815,919	-		GFF1792	0.78	-2.3
1,815,919	-		GFF1792	0.78	-0.2
1,815,919	-		GFF1792	0.78	-0.3
1,815,919	-		GFF1792	0.78	-1.7
1,815,919	-		GFF1792	0.78	-0.1
1,815,919	-		GFF1792	0.78	-0.1
1,815,936	+		GFF1792	0.80	+0.4
1,815,936	+		GFF1792	0.80	-0.9
1,815,972	+		GFF1792	0.84	-0.2
1,815,982	-		GFF1792	0.85	+0.2
1,816,017	+		GFF1792	0.88	+1.2
1,816,038	-				-1.1
1,816,041	+				-0.9
1,816,046	+				-0.7
1,816,046	+				-0.5
1,816,049	-				-0.5
1,816,054	-				-0.4
1,816,084	+				-1.6
1,816,087	-				-0.0
1,816,092	-				-0.5
1,816,092	-				-0.9
1,816,095	-				-0.2
1,816,126	-				-0.1
1,816,197	-				-1.1
1,816,200	+				-0.6
1,816,232	+				-1.7
1,816,240	-				+0.6
1,816,242	-				-1.4
1,816,328	-				+0.2
1,816,328	-				-0.8
1,816,328	-				+0.1
1,816,330	+				-0.1
1,816,352	-				-0.7
1,816,354	-				-0.8
1,816,354	-				-1.3
1,816,396	+				-2.1
1,816,417	+				-1.7
1,816,425	-				+0.4
1,816,425	-				-1.5
1,816,431	-				+0.5
1,816,441	-				+0.9
1,816,451	-				+0.4
1,816,457	-				-0.6
1,816,541	+		GFF1793	0.29	+0.0
1,816,560	+		GFF1793	0.39	-2.8
1,816,593	+		GFF1793	0.55	+0.4
1,816,616	-		GFF1793	0.66	+0.1
1,816,618	+		GFF1793	0.67	-2.3
1,816,618	+		GFF1793	0.67	+0.3
1,816,618	+		GFF1793	0.67	+0.4
1,816,618	+		GFF1793	0.67	-0.7
1,816,618	+		GFF1793	0.67	-3.1
1,816,618	+		GFF1793	0.67	+0.3
1,816,618	+		GFF1793	0.67	-1.0
1,816,626	-		GFF1793	0.71	-1.4
1,816,626	-		GFF1793	0.71	+0.9
1,816,626	-		GFF1793	0.71	-0.9
1,816,629	+		GFF1793	0.73	-0.0
1,816,629	+		GFF1793	0.73	-1.6
1,816,629	+		GFF1793	0.73	-0.0
1,816,634	+		GFF1793	0.75	+0.6
1,816,634	+		GFF1793	0.75	-0.4
1,816,634	+		GFF1793	0.75	-1.5
1,816,634	+		GFF1793	0.75	-0.7
1,816,634	+		GFF1793	0.75	-0.2
1,816,634	+		GFF1793	0.75	+1.0
1,816,634	+		GFF1793	0.75	-0.9
1,816,634	+		GFF1793	0.75	+0.5
1,816,634	+		GFF1793	0.75	-1.4
1,816,634	+		GFF1793	0.75	-1.7
1,816,634	+		GFF1793	0.75	+0.2
1,816,634	+		GFF1793	0.75	+0.3
1,816,634	+		GFF1793	0.75	+0.6
1,816,642	-		GFF1793	0.79	-0.4
1,816,642	-		GFF1793	0.79	+1.3
1,816,642	-		GFF1793	0.79	+0.3
1,816,642	-		GFF1793	0.79	+0.5
1,816,642	-		GFF1793	0.79	-0.1
1,816,647	+		GFF1793	0.81	-1.4
1,816,647	+		GFF1793	0.81	-0.6
1,816,651	+		GFF1793	0.83	-0.7
1,816,651	+		GFF1793	0.83	+0.0
1,816,659	-		GFF1793	0.87	+0.2
1,816,659	-		GFF1793	0.87	-0.4
1,816,660	-		GFF1793	0.88	+0.4
1,816,679	-				+0.7
1,816,698	+				-0.5
1,816,705	-				+0.5
1,816,706	-				-0.1
1,816,710	+				-2.1
1,816,710	+				-0.5
1,816,747	-		GFF1794	0.10	-0.7
1,816,749	+		GFF1794	0.11	+1.0
1,816,749	+		GFF1794	0.11	+0.3
1,816,755	-		GFF1794	0.12	-1.5
1,816,757	-		GFF1794	0.12	-0.8
1,816,769	+		GFF1794	0.14	-0.9
1,816,799	+		GFF1794	0.20	+0.0
1,816,841	+		GFF1794	0.27	-0.8
1,816,841	+		GFF1794	0.27	+0.8
1,816,841	+		GFF1794	0.27	+0.8
1,816,847	+		GFF1794	0.28	-1.5
1,816,847	+		GFF1794	0.28	-2.1
1,816,849	-		GFF1794	0.28	-0.1
1,816,849	-		GFF1794	0.28	+0.3
1,816,849	-		GFF1794	0.28	-1.7
1,816,851	+		GFF1794	0.29	-1.4
1,816,853	-		GFF1794	0.29	-1.0
1,816,855	-		GFF1794	0.29	-1.3
1,816,860	-		GFF1794	0.30	-1.3
1,816,948	+		GFF1794	0.46	+0.7
1,816,948	+		GFF1794	0.46	-0.6
1,817,036	+		GFF1794	0.61	+1.0
1,817,036	+		GFF1794	0.61	-1.1
1,817,036	+		GFF1794	0.61	-0.2
1,817,039	-		GFF1794	0.61	+1.0
1,817,044	-		GFF1794	0.62	-0.2
1,817,044	-		GFF1794	0.62	+0.2
1,817,044	-		GFF1794	0.62	-1.7
1,817,044	-		GFF1794	0.62	-0.5
1,817,044	-		GFF1794	0.62	-1.3
1,817,044	-		GFF1794	0.62	+0.4
1,817,044	-		GFF1794	0.62	+0.3
1,817,044	-		GFF1794	0.62	-1.3
1,817,049	+		GFF1794	0.63	-0.9
1,817,059	-		GFF1794	0.65	-0.6
1,817,082	+		GFF1794	0.69	-2.9
1,817,087	+		GFF1794	0.70	-0.1
1,817,087	+		GFF1794	0.70	-0.9
1,817,087	+		GFF1794	0.70	-1.3
1,817,092	+		GFF1794	0.71	+0.4
1,817,092	+		GFF1794	0.71	-1.9
1,817,095	-		GFF1794	0.71	-1.6
1,817,095	-		GFF1794	0.71	+0.8
1,817,100	-		GFF1794	0.72	-0.3
1,817,103	+		GFF1794	0.73	+0.4
1,817,108	+		GFF1794	0.73	-1.4
1,817,116	-		GFF1794	0.75	-0.0
1,817,121	-		GFF1794	0.76	-1.1
1,817,121	-		GFF1794	0.76	+0.4
1,817,121	-		GFF1794	0.76	-1.5
1,817,121	-		GFF1794	0.76	-0.1
1,817,121	-		GFF1794	0.76	-3.0
1,817,154	+		GFF1794	0.82	+0.6
1,817,156	-		GFF1794	0.82	-1.8
1,817,167	+		GFF1794	0.84	-0.2
1,817,187	+		GFF1794	0.87	-0.8
1,817,229	+				-0.7
1,817,229	+				+0.6
1,817,229	+				-0.5
1,817,229	+				-0.2
1,817,237	-				-0.4
1,817,237	-				-0.5
1,817,239	+				+0.1
1,817,239	+				-0.2
1,817,239	+				+0.1
1,817,242	-				+0.4
1,817,244	+				+1.6
1,817,247	-				-1.4
1,817,247	-				-0.9
1,817,258	+				-2.5
1,817,266	-				-0.1
1,817,266	-				-0.3
1,817,283	-				-0.9
1,817,285	+				-1.3
1,817,290	+				-0.3
1,817,290	+				+1.0
1,817,290	+				-1.8
1,817,293	-				-0.5
1,817,293	-				-2.0
1,817,298	-				+0.3
1,817,298	-				-0.1
1,817,298	-				-1.1
1,817,308	+				-0.4
1,817,308	+				-0.9
1,817,308	+				-0.3
1,817,316	-				+0.5
1,817,346	-		GFF1795	0.17	-0.9
1,817,371	-		GFF1795	0.25	-0.4
1,817,378	-		GFF1795	0.27	+0.1
1,817,389	+		GFF1795	0.30	-0.9
1,817,389	+		GFF1795	0.30	-0.5
1,817,389	+		GFF1795	0.30	+0.7
1,817,389	+		GFF1795	0.30	-1.8
1,817,392	-		GFF1795	0.31	+0.1
1,817,397	-		GFF1795	0.32	-0.3
1,817,435	+		GFF1795	0.44	-0.8
1,817,435	+		GFF1795	0.44	+0.9
1,817,435	+		GFF1795	0.44	-0.1
1,817,440	+		GFF1795	0.45	-1.6
1,817,440	+		GFF1795	0.45	-1.5
1,817,440	+		GFF1795	0.45	-0.4
1,817,440	+		GFF1795	0.45	-1.1
1,817,440	+		GFF1795	0.45	-1.7
1,817,440	+		GFF1795	0.45	+0.0
1,817,448	-		GFF1795	0.47	-2.8
1,817,448	-		GFF1795	0.47	-0.5
1,817,448	-		GFF1795	0.47	+0.4
1,817,448	-		GFF1795	0.47	-0.8
1,817,448	-		GFF1795	0.47	-2.7
1,817,448	-		GFF1795	0.47	+1.2
1,817,448	-		GFF1795	0.47	-0.2
1,817,448	-		GFF1795	0.47	-1.4
1,817,448	-		GFF1795	0.47	+1.0
1,817,452	+		GFF1795	0.49	+1.1
1,817,463	+		GFF1795	0.52	-0.6
1,817,465	+		GFF1795	0.53	-0.1
1,817,465	+		GFF1795	0.53	+0.7
1,817,470	+		GFF1795	0.54	-2.1
1,817,470	+		GFF1795	0.54	+1.2
1,817,473	-		GFF1795	0.55	-2.2
1,817,478	-		GFF1795	0.56	-0.5
1,817,483	-		GFF1795	0.58	+0.3
1,817,483	-		GFF1795	0.58	-0.4
1,817,483	-		GFF1795	0.58	+0.2
1,817,490	+		GFF1795	0.60	-0.0
1,817,490	+		GFF1795	0.60	-0.3
1,817,490	+		GFF1795	0.60	-1.8
1,817,495	+		GFF1795	0.61	-1.4
1,817,498	-		GFF1795	0.62	-0.4
1,817,498	-		GFF1795	0.62	+0.1
1,817,498	-		GFF1795	0.62	+0.6
1,817,498	-		GFF1795	0.62	-0.1
1,817,498	-		GFF1795	0.62	-0.6
1,817,503	-		GFF1795	0.64	-0.8
1,817,512	+		GFF1795	0.66	+0.4
1,817,512	+		GFF1795	0.66	-1.4
1,817,520	-		GFF1795	0.69	+0.3
1,817,529	-		GFF1795	0.71	+0.2
1,817,579	-		GFF1795	0.86	+1.6
1,817,615	-				+0.5
1,817,615	-				+0.2
1,817,648	+				-0.6
1,817,648	+				-1.4
1,817,648	+				-0.6
1,817,671	+				-1.5
1,817,673	-				+0.6