Strain Fitness in Sphingobium sp. HT1-2 around GFF1770

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,799,783	+		GFF1769	0.58	-1.1
1,799,783	+		GFF1769	0.58	-2.8
1,799,783	+		GFF1769	0.58	-1.0
1,799,783	+		GFF1769	0.58	+0.9
1,799,783	+		GFF1769	0.58	-1.6
1,799,791	-		GFF1769	0.59	+1.3
1,799,791	-		GFF1769	0.59	+1.0
1,799,791	-		GFF1769	0.59	-0.0
1,799,806	+		GFF1769	0.59	-0.6
1,799,814	-		GFF1769	0.60	-0.7
1,799,824	-		GFF1769	0.60	-0.2
1,799,824	-		GFF1769	0.60	-0.1
1,799,824	-		GFF1769	0.60	+0.4
1,799,835	+		GFF1769	0.61	-1.1
1,799,840	+		GFF1769	0.61	+0.4
1,799,843	-		GFF1769	0.61	+0.1
1,799,849	-		GFF1769	0.61	-0.4
1,799,854	+		GFF1769	0.61	-0.2
1,799,862	-		GFF1769	0.62	-1.8
1,799,862	-		GFF1769	0.62	+0.5
1,799,862	-		GFF1769	0.62	+0.3
1,799,885	+		GFF1769	0.63	-2.1
1,799,893	-		GFF1769	0.63	+0.7
1,799,909	-		GFF1769	0.64	+0.1
1,799,909	-		GFF1769	0.64	-0.6
1,799,929	-		GFF1769	0.65	-0.5
1,799,993	+		GFF1769	0.67	+0.8
1,800,001	-		GFF1769	0.68	+0.3
1,800,019	+		GFF1769	0.68	+0.6
1,800,027	-		GFF1769	0.69	+1.1
1,800,052	-		GFF1769	0.70	+0.8
1,800,075	+		GFF1769	0.71	-0.1
1,800,100	+		GFF1769	0.72	-1.2
1,800,100	+		GFF1769	0.72	-0.4
1,800,116	+		GFF1769	0.72	-1.3
1,800,122	+		GFF1769	0.73	-0.5
1,800,125	-		GFF1769	0.73	-0.5
1,800,130	-		GFF1769	0.73	-0.7
1,800,147	+		GFF1769	0.74	-0.5
1,800,150	-		GFF1769	0.74	-1.0
1,800,152	+		GFF1769	0.74	-1.7
1,800,152	+		GFF1769	0.74	+1.1
1,800,152	+		GFF1769	0.74	-2.0
1,800,160	-		GFF1769	0.74	-0.0
1,800,160	-		GFF1769	0.74	+0.4
1,800,160	-		GFF1769	0.74	+1.4
1,800,162	+		GFF1769	0.74	-1.2
1,800,162	+		GFF1769	0.74	+0.4
1,800,162	+		GFF1769	0.74	-0.5
1,800,162	+		GFF1769	0.74	-0.8
1,800,162	+		GFF1769	0.74	-2.0
1,800,162	+		GFF1769	0.74	-1.5
1,800,162	+		GFF1769	0.74	-0.7
1,800,165	-		GFF1769	0.75	+1.1
1,800,170	-		GFF1769	0.75	+1.1
1,800,170	-		GFF1769	0.75	+1.1
1,800,170	-		GFF1769	0.75	+0.0
1,800,187	+		GFF1769	0.75	-0.2
1,800,195	-		GFF1769	0.76	-0.2
1,800,197	+		GFF1769	0.76	-0.4
1,800,197	+		GFF1769	0.76	-0.5
1,800,205	-		GFF1769	0.76	+0.2
1,800,236	-		GFF1769	0.78	-1.2
1,800,247	+		GFF1769	0.78	-1.6
1,800,247	+		GFF1769	0.78	+1.0
1,800,250	-		GFF1769	0.78	+0.1
1,800,272	-		GFF1769	0.79	-0.5
1,800,286	+		GFF1769	0.80	+0.3
1,800,286	+		GFF1769	0.80	+1.0
1,800,287	-		GFF1769	0.80	-0.8
1,800,288	+		GFF1769	0.80	-0.3
1,800,296	-		GFF1769	0.80	-0.2
1,800,296	-		GFF1769	0.80	+0.3
1,800,296	-		GFF1769	0.80	-0.4
1,800,298	+		GFF1769	0.80	-0.7
1,800,298	+		GFF1769	0.80	-2.2
1,800,331	-		GFF1769	0.82	-0.2
1,800,346	-		GFF1769	0.82	+0.2
1,800,353	+		GFF1769	0.82	-1.3
1,800,354	-		GFF1769	0.83	-1.1
1,800,356	+		GFF1769	0.83	-0.6
1,800,356	+		GFF1769	0.83	-1.9
1,800,356	+		GFF1769	0.83	-3.1
1,800,359	+		GFF1769	0.83	-0.2
1,800,359	+		GFF1769	0.83	+0.3
1,800,359	+		GFF1769	0.83	-1.5
1,800,367	-		GFF1769	0.83	-0.9
1,800,403	-		GFF1769	0.85	+1.0
1,800,407	+		GFF1769	0.85	-1.0
1,800,407	+		GFF1769	0.85	-1.7
1,800,440	+		GFF1769	0.86	-0.3
1,800,450	+		GFF1769	0.87	-0.5
1,800,455	+		GFF1769	0.87	-1.1
1,800,474	+		GFF1769	0.88	-0.3
1,800,501	+		GFF1769	0.89	-0.1
1,800,509	-		GFF1769	0.89	-2.4
1,800,516	+		GFF1769	0.89	-1.4
1,800,519	+		GFF1769	0.89	-1.5
1,800,523	-		GFF1769	0.90	+0.2
1,800,524	+		GFF1769	0.90	-1.9
1,800,524	-		GFF1769	0.90	+0.9
1,800,532	-				-0.9
1,800,535	+				-0.5
1,800,535	+				+0.3
1,800,535	+				+0.5
1,800,535	+				-2.1
1,800,535	+				-1.5
1,800,539	+				-2.5
1,800,543	-				+1.1
1,800,543	-				-0.3
1,800,543	-				-0.2
1,800,543	-				+0.2
1,800,548	-				+0.2
1,800,548	-				-0.4
1,800,567	+				+0.6
1,800,567	+				-0.1
1,800,575	-				+0.1
1,800,585	+				+1.1
1,800,590	+				-0.1
1,800,591	+				-0.2
1,800,596	+				-0.0
1,800,596	+				+0.5
1,800,596	+				-3.2
1,800,596	+				+0.7
1,800,596	+				-0.3
1,800,596	+				-0.7
1,800,596	+				+0.7
1,800,596	+				-0.9
1,800,596	+				-1.5
1,800,596	+				-0.8
1,800,596	+				+0.2
1,800,596	+				-1.5
1,800,596	+				+0.4
1,800,596	+				+0.9
1,800,596	+				-1.4
1,800,596	+				+0.2
1,800,599	-				-0.0
1,800,604	-				-0.1
1,800,604	-				-1.0
1,800,604	-				+0.5
1,800,604	-				-2.0
1,800,604	-				+0.0
1,800,604	-				-1.2
1,800,604	-				+0.3
1,800,604	-				-0.4
1,800,604	-				-0.5
1,800,604	-				+0.1
1,800,604	-				-1.9
1,800,604	-				-0.9
1,800,604	-				-1.3
1,800,604	-				+0.4
1,800,604	-				-0.8
1,800,604	-				+1.7
1,800,604	-				+0.1
1,800,604	-				-0.0
1,800,604	-				+0.9
1,800,636	-				+1.1
1,800,640	-				-1.0
1,800,678	-				+0.0
1,800,690	-				-1.6
1,800,708	+				-0.4
1,800,754	-				-1.0
1,800,760	-				-1.7
1,800,776	+				-0.0
1,800,841	-		GFF1770	0.14	-0.5
1,800,845	+		GFF1770	0.15	-0.4
1,800,845	+		GFF1770	0.15	-1.0
1,800,845	+		GFF1770	0.15	+1.0
1,800,845	+		GFF1770	0.15	-1.2
1,800,845	+		GFF1770	0.15	-0.3
1,800,845	+		GFF1770	0.15	+0.3
1,800,845	+		GFF1770	0.15	-1.1
1,800,853	-		GFF1770	0.16	-0.4
1,800,853	-		GFF1770	0.16	-0.2
1,800,853	-		GFF1770	0.16	-1.6
1,800,853	-		GFF1770	0.16	+1.0
1,800,853	-		GFF1770	0.16	+1.2
1,800,853	-		GFF1770	0.16	+0.5
1,800,853	-		GFF1770	0.16	-0.0
1,800,853	-		GFF1770	0.16	+1.3
1,800,853	-		GFF1770	0.16	+1.0
1,800,853	-		GFF1770	0.16	+1.1
1,800,879	-		GFF1770	0.21	-0.4
1,800,879	-		GFF1770	0.21	-0.6
1,800,880	+		GFF1770	0.21	-1.3
1,800,928	+		GFF1770	0.30	-2.0
1,800,936	-		GFF1770	0.31	+0.7
1,800,936	-		GFF1770	0.31	-0.7
1,800,936	-		GFF1770	0.31	-2.0
1,800,936	-		GFF1770	0.31	-0.6
1,800,949	+		GFF1770	0.33	+0.2
1,800,949	+		GFF1770	0.33	+0.2
1,800,949	+		GFF1770	0.33	-2.1
1,800,951	+		GFF1770	0.34	-1.1
1,800,951	+		GFF1770	0.34	-0.1
1,800,951	+		GFF1770	0.34	+0.8
1,800,951	+		GFF1770	0.34	+0.1
1,800,957	-		GFF1770	0.35	-0.8
1,800,957	-		GFF1770	0.35	+1.3
1,800,957	-		GFF1770	0.35	-0.4
1,800,957	-		GFF1770	0.35	-2.3
1,800,959	-		GFF1770	0.35	-1.5
1,800,959	-		GFF1770	0.35	+0.7
1,800,959	-		GFF1770	0.35	+1.0
1,800,959	-		GFF1770	0.35	-1.5
1,800,959	-		GFF1770	0.35	-0.9
1,800,970	+		GFF1770	0.37	-0.5
1,801,004	-		GFF1770	0.43	-0.5
1,801,006	+		GFF1770	0.44	+0.5
1,801,013	+		GFF1770	0.45	+0.1
1,801,013	+		GFF1770	0.45	-0.6
1,801,013	+		GFF1770	0.45	-0.5
1,801,013	+		GFF1770	0.45	-0.7
1,801,013	+		GFF1770	0.45	-1.0
1,801,013	+		GFF1770	0.45	+0.1
1,801,013	+		GFF1770	0.45	+0.0
1,801,014	-		GFF1770	0.45	+0.8
1,801,021	-		GFF1770	0.46	-0.4
1,801,021	-		GFF1770	0.46	-1.1
1,801,021	-		GFF1770	0.46	-1.6
1,801,021	-		GFF1770	0.46	-0.2
1,801,021	-		GFF1770	0.46	-0.6
1,801,021	-		GFF1770	0.46	-1.9
1,801,031	+		GFF1770	0.48	-1.4
1,801,039	-		GFF1770	0.50	+0.1
1,801,048	-		GFF1770	0.51	-0.2
1,801,067	+		GFF1770	0.55	+0.9
1,801,072	+		GFF1770	0.55	-1.5
1,801,072	+		GFF1770	0.55	-0.3
1,801,074	+		GFF1770	0.56	-0.4
1,801,075	-		GFF1770	0.56	+1.8
1,801,075	-		GFF1770	0.56	-0.7
1,801,098	+		GFF1770	0.60	+0.9
1,801,098	+		GFF1770	0.60	-1.9
1,801,127	+		GFF1770	0.65	-0.5
1,801,140	+		GFF1770	0.68	+0.5
1,801,148	-		GFF1770	0.69	-0.1
1,801,172	-		GFF1770	0.74	-0.1
1,801,172	-		GFF1770	0.74	+0.2
1,801,200	-		GFF1770	0.79	+0.2
1,801,202	+		GFF1770	0.79	-0.6
1,801,221	+		GFF1770	0.82	+0.6
1,801,234	-		GFF1770	0.85	-0.1
1,801,254	-		GFF1770	0.88	-0.5
1,801,254	-		GFF1770	0.88	-2.5
1,801,254	-		GFF1770	0.88	-0.1
1,801,278	+				-0.5
1,801,286	-				-0.2
1,801,291	+				+0.1
1,801,291	+				-1.3
1,801,312	+				+1.1
1,801,328	-				-1.1
1,801,335	-				+0.3
1,801,342	-				-0.6
1,801,342	-				+0.1
1,801,353	+				+0.4
1,801,353	+				+0.7
1,801,353	+				-0.0
1,801,361	-				+0.7
1,801,361	-				-0.2
1,801,364	+				+1.9
1,801,365	+				-0.6
1,801,365	+				-1.1
1,801,365	+				+0.6
1,801,366	-				-0.4
1,801,366	-				+0.0
1,801,373	-				-1.4
1,801,373	-				+1.3
1,801,373	-				-1.3
1,801,373	-				-1.1
1,801,373	-				+0.0
1,801,380	-				-0.3
1,801,391	+				-0.1
1,801,392	+				+0.6
1,801,399	-				-0.6
1,801,399	-				+0.5
1,801,403	+				-0.3
1,801,413	+				-0.4
1,801,413	+				-1.7
1,801,413	+				+0.2
1,801,421	-				+0.3
1,801,421	-				+0.1
1,801,421	-				-1.3
1,801,421	-				-0.1
1,801,421	-				-0.3
1,801,471	+				-0.1
1,801,481	+				-1.2
1,801,481	+				-0.7
1,801,481	+				+0.0
1,801,489	-				-0.6
1,801,507	+				+0.2
1,801,507	+				-0.1
1,801,512	+				-1.1
1,801,517	+				+0.3
1,801,517	+				+1.1
1,801,525	-				-0.7
1,801,535	-		GFF1771	0.11	+0.3
1,801,535	-		GFF1771	0.11	-0.3
1,801,536	+		GFF1771	0.11	+0.2
1,801,563	-		GFF1771	0.25	-0.7
1,801,565	+		GFF1771	0.26	-0.4
1,801,594	-		GFF1771	0.40	-0.2
1,801,620	-		GFF1771	0.54	-0.3
1,801,662	-		GFF1771	0.75	+0.6
1,801,679	-		GFF1771	0.83	+0.2
1,801,739	+				-1.1
1,801,751	+		GFF1772	0.14	+0.4
1,801,754	-		GFF1772	0.15	-1.8
1,801,764	-		GFF1772	0.18	-1.0
1,801,797	-		GFF1772	0.28	-0.5
1,801,797	-		GFF1772	0.28	-0.4
1,801,804	+		GFF1772	0.30	+0.5
1,801,804	+		GFF1772	0.30	-1.1
1,801,805	-		GFF1772	0.31	+0.2
1,801,812	+		GFF1772	0.33	-0.0
1,801,817	-		GFF1772	0.35	-0.1
1,801,820	-		GFF1772	0.36	-0.1
1,801,825	-		GFF1772	0.37	-1.0
1,801,829	-		GFF1772	0.38	-0.6
1,801,832	+		GFF1772	0.39	-0.6
1,801,832	+		GFF1772	0.39	-0.1
1,801,832	+		GFF1772	0.39	-1.0
1,801,832	+		GFF1772	0.39	-0.7
1,801,832	+		GFF1772	0.39	-1.0
1,801,832	+		GFF1772	0.39	-0.8
1,801,832	+		GFF1772	0.39	+0.7
1,801,832	+		GFF1772	0.39	-0.9
1,801,835	-		GFF1772	0.40	-2.9
1,801,840	-		GFF1772	0.42	-0.2
1,801,840	-		GFF1772	0.42	+0.6
1,801,840	-		GFF1772	0.42	+0.5
1,801,840	-		GFF1772	0.42	-0.6
1,801,840	-		GFF1772	0.42	-1.8
1,801,840	-		GFF1772	0.42	-0.3
1,801,840	-		GFF1772	0.42	-2.1
1,801,849	-		GFF1772	0.45	+0.6
1,801,849	-		GFF1772	0.45	-2.3
1,801,849	-		GFF1772	0.45	-0.9
1,801,850	+		GFF1772	0.45	-0.9
1,801,883	+		GFF1772	0.56	+0.1
1,801,883	+		GFF1772	0.56	-1.8
1,801,883	+		GFF1772	0.56	-2.1
1,801,891	-		GFF1772	0.58	+0.7
1,801,891	-		GFF1772	0.58	-0.4
1,801,891	-		GFF1772	0.58	+0.7
1,801,891	-		GFF1772	0.58	+0.9
1,801,891	-		GFF1772	0.58	+0.5
1,801,891	-		GFF1772	0.58	-0.6
1,801,891	-		GFF1772	0.58	-0.8
1,801,892	+		GFF1772	0.58	+0.2
1,801,926	+		GFF1772	0.69	+1.3
1,801,975	+		GFF1772	0.85	-0.5
1,801,983	-		GFF1772	0.87	-1.3
1,801,983	-		GFF1772	0.87	-1.3
1,801,983	-		GFF1772	0.87	-2.6
1,801,983	-		GFF1772	0.87	-1.0
1,801,999	-				-0.9
1,802,000	+				-0.8
1,802,000	+				-0.1
1,802,008	-				+0.4
1,802,008	-				-1.4
1,802,008	-				-2.0
1,802,010	-				+1.4
1,802,020	+				+0.9
1,802,030	+				+0.5
1,802,030	+				-0.2
1,802,038	-				+0.6
1,802,043	+				+0.4
1,802,043	-				-0.0
1,802,049	-				+0.5
1,802,057	+				+0.5
1,802,057	+				+0.8
1,802,062	+		GFF1773	0.11	+0.2
1,802,062	+		GFF1773	0.11	-1.0
1,802,065	-		GFF1773	0.11	+0.4
1,802,072	+		GFF1773	0.13	-0.9
1,802,074	+		GFF1773	0.13	+0.5
1,802,082	-		GFF1773	0.15	+1.1
1,802,082	-		GFF1773	0.15	-0.7
1,802,082	-		GFF1773	0.15	-0.0
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