Strain Fitness in Sphingobium sp. HT1-2 around GFF1761

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,790,068	+				-0.3
1,790,084	-				+0.3
1,790,124	-				+0.4
1,790,126	-				-0.1
1,790,126	-				+0.1
1,790,128	+				-0.5
1,790,128	+				+0.1
1,790,130	+				+1.4
1,790,130	+				-2.7
1,790,130	+				+1.3
1,790,175	-				+0.7
1,790,218	+		GFF1760	0.12	-1.9
1,790,223	-		GFF1760	0.13	-0.1
1,790,226	-		GFF1760	0.13	+0.4
1,790,226	-		GFF1760	0.13	+1.1
1,790,232	+		GFF1760	0.14	+0.8
1,790,328	-		GFF1760	0.27	-0.6
1,790,332	-		GFF1760	0.28	-0.8
1,790,367	+		GFF1760	0.33	+0.1
1,790,367	+		GFF1760	0.33	+0.1
1,790,400	-		GFF1760	0.37	-2.1
1,790,404	+		GFF1760	0.38	+1.3
1,790,404	+		GFF1760	0.38	-0.4
1,790,404	+		GFF1760	0.38	+0.7
1,790,412	-		GFF1760	0.39	-1.5
1,790,419	-		GFF1760	0.40	-2.0
1,790,420	+		GFF1760	0.40	-0.0
1,790,428	-		GFF1760	0.41	+0.2
1,790,446	+		GFF1760	0.43	-0.5
1,790,451	+		GFF1760	0.44	+0.3
1,790,451	+		GFF1760	0.44	-0.9
1,790,451	+		GFF1760	0.44	-0.9
1,790,451	+		GFF1760	0.44	+0.2
1,790,454	-		GFF1760	0.45	-3.0
1,790,454	-		GFF1760	0.45	+1.2
1,790,459	-		GFF1760	0.45	-0.7
1,790,459	-		GFF1760	0.45	-1.8
1,790,459	-		GFF1760	0.45	-1.7
1,790,459	-		GFF1760	0.45	+0.1
1,790,469	-		GFF1760	0.47	-0.3
1,790,496	+		GFF1760	0.50	-1.6
1,790,496	+		GFF1760	0.50	-0.4
1,790,496	+		GFF1760	0.50	-0.7
1,790,496	+		GFF1760	0.50	-1.3
1,790,504	-		GFF1760	0.51	+0.4
1,790,504	-		GFF1760	0.51	-1.4
1,790,506	+		GFF1760	0.52	+0.0
1,790,506	+		GFF1760	0.52	-0.5
1,790,506	+		GFF1760	0.52	-0.6
1,790,506	+		GFF1760	0.52	-0.7
1,790,506	+		GFF1760	0.52	-0.4
1,790,506	+		GFF1760	0.52	-2.2
1,790,506	+		GFF1760	0.52	+0.5
1,790,506	+		GFF1760	0.52	-1.1
1,790,506	+		GFF1760	0.52	-1.1
1,790,506	+		GFF1760	0.52	-2.8
1,790,506	+		GFF1760	0.52	+1.5
1,790,508	-		GFF1760	0.52	-1.2
1,790,514	-		GFF1760	0.53	+1.1
1,790,514	-		GFF1760	0.53	-1.0
1,790,514	-		GFF1760	0.53	+0.6
1,790,514	-		GFF1760	0.53	-1.0
1,790,514	-		GFF1760	0.53	-0.6
1,790,514	-		GFF1760	0.53	-1.2
1,790,514	-		GFF1760	0.53	-0.3
1,790,514	-		GFF1760	0.53	-0.5
1,790,514	-		GFF1760	0.53	-1.3
1,790,526	+		GFF1760	0.54	-0.2
1,790,526	+		GFF1760	0.54	-1.3
1,790,547	+		GFF1760	0.57	+0.4
1,790,562	+		GFF1760	0.59	-0.3
1,790,570	-		GFF1760	0.61	-1.6
1,790,585	-		GFF1760	0.63	-0.2
1,790,598	+		GFF1760	0.64	-0.2
1,790,603	+		GFF1760	0.65	-0.3
1,790,603	+		GFF1760	0.65	+1.8
1,790,603	+		GFF1760	0.65	-0.6
1,790,603	+		GFF1760	0.65	+0.2
1,790,603	+		GFF1760	0.65	-1.0
1,790,603	+		GFF1760	0.65	+0.5
1,790,605	+		GFF1760	0.65	+0.6
1,790,611	-		GFF1760	0.66	+0.4
1,790,611	-		GFF1760	0.66	-0.4
1,790,611	-		GFF1760	0.66	+0.4
1,790,611	-		GFF1760	0.66	+0.7
1,790,643	+		GFF1760	0.71	-1.4
1,790,643	+		GFF1760	0.71	-1.3
1,790,643	+		GFF1760	0.71	-0.1
1,790,643	+		GFF1760	0.71	-0.8
1,790,643	+		GFF1760	0.71	+1.6
1,790,643	+		GFF1760	0.71	-1.3
1,790,643	+		GFF1760	0.71	-0.5
1,790,643	+		GFF1760	0.71	+0.5
1,790,651	-		GFF1760	0.72	+1.3
1,790,651	-		GFF1760	0.72	-1.4
1,790,651	-		GFF1760	0.72	+1.2
1,790,651	-		GFF1760	0.72	+0.4
1,790,653	+		GFF1760	0.72	+0.5
1,790,661	-		GFF1760	0.73	-0.7
1,790,661	-		GFF1760	0.73	+1.8
1,790,661	-		GFF1760	0.73	-2.5
1,790,673	+		GFF1760	0.75	-2.9
1,790,678	+		GFF1760	0.76	+0.4
1,790,720	+		GFF1760	0.81	-1.7
1,790,734	+		GFF1760	0.83	-0.2
1,790,742	-		GFF1760	0.84	+0.1
1,790,756	+		GFF1760	0.86	-0.2
1,790,756	+		GFF1760	0.86	-1.4
1,790,758	+		GFF1760	0.87	-0.9
1,790,758	+		GFF1760	0.87	-0.6
1,790,763	+		GFF1760	0.87	+0.1
1,790,770	+		GFF1760	0.88	-0.8
1,790,773	-		GFF1760	0.89	+0.6
1,790,787	+				+1.1
1,790,795	-				-0.1
1,790,795	-				-0.4
1,790,795	-				-0.6
1,790,805	+				+0.6
1,790,805	+				-0.1
1,790,805	+				-0.3
1,790,814	+				-0.4
1,790,865	+				-0.7
1,790,865	+				-0.2
1,790,879	+				-1.3
1,790,879	+				+0.7
1,790,883	+				-0.7
1,790,891	-				+0.0
1,790,897	+				-2.8
1,790,914	-				-2.3
1,790,915	+				+0.1
1,790,923	-				+0.3
1,790,930	+				-1.6
1,790,931	-				+0.5
1,790,935	+				-0.0
1,790,935	+				-0.3
1,790,938	-				+0.5
1,790,943	-				-0.8
1,790,943	-				-1.8
1,790,943	-				-0.6
1,790,963	+				-1.3
1,790,963	+				-1.4
1,790,971	-				+0.3
1,790,971	-				-0.7
1,790,997	+				-0.9
1,790,997	+				-1.4
1,791,054	-				-0.5
1,791,061	-				-0.8
1,791,063	+				+1.1
1,791,064	-				-2.1
1,791,078	+				+0.1
1,791,086	-		GFF1761	0.13	+0.5
1,791,091	+		GFF1761	0.15	+0.7
1,791,091	+		GFF1761	0.15	-0.1
1,791,091	+		GFF1761	0.15	-0.1
1,791,099	-		GFF1761	0.18	+1.1
1,791,103	+		GFF1761	0.20	-0.2
1,791,111	+		GFF1761	0.24	-2.3
1,791,111	-		GFF1761	0.24	-0.5
1,791,111	-		GFF1761	0.24	-0.1
1,791,111	-		GFF1761	0.24	+0.3
1,791,184	+		GFF1761	0.55	-0.2
1,791,192	-		GFF1761	0.58	-0.6
1,791,192	-		GFF1761	0.58	-1.5
1,791,209	+		GFF1761	0.65	+0.3
1,791,209	+		GFF1761	0.65	-0.6
1,791,234	+		GFF1761	0.76	-0.4
1,791,234	+		GFF1761	0.76	+0.7
1,791,269	+				+0.3
1,791,313	+				-0.5
1,791,314	+				+1.9
1,791,334	+				-1.5
1,791,352	+				-1.5
1,791,360	-				+0.6
1,791,383	-				+0.1
1,791,383	-				-0.9
1,791,388	-				-0.0
1,791,390	+				-0.3
1,791,397	-				+0.7
1,791,476	+				-0.9
1,791,483	-				-2.0
1,791,484	-				-1.3
1,791,496	+				+0.0
1,791,517	+				-2.0
1,791,539	+				-0.4
1,791,539	+				-0.7
1,791,566	+				+0.8
1,791,613	+				-0.3
1,791,621	-				-0.0
1,791,625	-				-0.4
1,791,680	-		GFF1762	0.11	-0.6
1,791,712	-		GFF1762	0.17	+0.2
1,791,712	-		GFF1762	0.17	-0.8
1,791,715	+		GFF1762	0.18	+0.8
1,791,717	-		GFF1762	0.18	-0.2
1,791,730	+		GFF1762	0.20	+0.4
1,791,733	-		GFF1762	0.21	-0.9
1,791,808	-		GFF1762	0.34	+0.1
1,791,839	+		GFF1762	0.40	-0.1
1,791,858	+		GFF1762	0.43	-2.1
1,791,859	+		GFF1762	0.44	+0.1
1,791,866	-		GFF1762	0.45	-0.1
1,791,867	-		GFF1762	0.45	-0.0
1,791,868	+		GFF1762	0.45	+1.6
1,791,878	+		GFF1762	0.47	-0.5
1,791,878	+		GFF1762	0.47	+0.1
1,791,886	-		GFF1762	0.48	-0.2
1,791,888	-		GFF1762	0.49	-0.1
1,791,888	-		GFF1762	0.49	-1.8
1,791,960	-		GFF1762	0.62	+0.6
1,791,990	-		GFF1762	0.67	-0.9
1,791,990	-		GFF1762	0.67	+0.2
1,792,023	+		GFF1762	0.73	+1.0
1,792,023	+		GFF1762	0.73	-0.9
1,792,051	-		GFF1762	0.78	+0.3
1,792,058	+		GFF1762	0.79	-1.0
1,792,087	-		GFF1762	0.84	+1.6
1,792,126	+				+0.2
1,792,126	+				+1.2
1,792,176	-				-2.3
1,792,180	+				+0.3
1,792,194	+				+0.3
1,792,216	+				+0.3
1,792,275	+		GFF1763	0.14	+0.2
1,792,275	+		GFF1763	0.14	+0.3