Strain Fitness in Sphingobium sp. HT1-2 around GFF1744

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,767,828	+		GFF1741	0.56	+0.6
1,767,828	+		GFF1741	0.56	-0.3
1,767,828	+		GFF1741	0.56	+0.0
1,767,828	+		GFF1741	0.56	+0.0
1,767,836	-		GFF1741	0.62	-0.3
1,767,836	-		GFF1741	0.62	+0.4
1,767,836	-		GFF1741	0.62	+0.3
1,767,836	-		GFF1741	0.62	-0.4
1,767,837	-		GFF1741	0.62	-0.3
1,767,837	-		GFF1741	0.62	+0.1
1,767,838	+		GFF1741	0.63	-0.8
1,767,838	+		GFF1741	0.63	-2.0
1,767,846	-		GFF1741	0.69	+0.2
1,767,856	-		GFF1741	0.76	-0.9
1,767,858	+		GFF1741	0.78	+1.1
1,767,858	+		GFF1741	0.78	-1.1
1,767,869	+		GFF1741	0.86	-0.6
1,767,871	-		GFF1741	0.87	+1.0
1,767,913	+				-0.7
1,767,931	+				-0.9
1,767,969	-				-2.5
1,767,975	+				+0.5
1,767,975	+				-2.1
1,767,975	+				-0.7
1,767,975	+				+0.8
1,767,975	+				-1.2
1,767,975	+				+1.4
1,767,975	+				-0.3
1,767,983	-				-1.0
1,767,983	-				-0.7
1,767,983	-				-0.5
1,767,983	-				+1.3
1,767,983	-				-0.4
1,767,983	-				-0.6
1,767,983	-				-0.1
1,767,993	-				-1.2
1,768,008	+		GFF1742	0.11	+0.1
1,768,008	+		GFF1742	0.11	-0.3
1,768,012	-		GFF1742	0.11	-1.1
1,768,016	-		GFF1742	0.12	-0.1
1,768,018	+		GFF1742	0.12	+0.1
1,768,059	-		GFF1742	0.18	-0.5
1,768,059	-		GFF1742	0.18	-0.0
1,768,059	-		GFF1742	0.18	+0.9
1,768,081	-		GFF1742	0.21	+0.3
1,768,082	-		GFF1742	0.21	-2.0
1,768,137	+		GFF1742	0.29	-0.9
1,768,138	+		GFF1742	0.29	+0.0
1,768,138	+		GFF1742	0.29	+0.8
1,768,138	+		GFF1742	0.29	-1.8
1,768,145	-		GFF1742	0.30	-2.1
1,768,146	-		GFF1742	0.30	-0.6
1,768,146	-		GFF1742	0.30	-0.3
1,768,146	-		GFF1742	0.30	+1.0
1,768,152	+		GFF1742	0.31	-1.0
1,768,171	+		GFF1742	0.34	-2.9
1,768,188	-		GFF1742	0.36	-1.8
1,768,199	-		GFF1742	0.38	-0.3
1,768,200	-		GFF1742	0.38	-0.3
1,768,230	-		GFF1742	0.43	+1.1
1,768,256	-		GFF1742	0.46	+0.7
1,768,258	+		GFF1742	0.47	+1.3
1,768,268	-		GFF1742	0.48	+0.6
1,768,304	+		GFF1742	0.53	-0.7
1,768,304	+		GFF1742	0.53	+1.9
1,768,312	-		GFF1742	0.54	-2.3
1,768,312	-		GFF1742	0.54	-0.7
1,768,321	-		GFF1742	0.56	+1.4
1,768,321	-		GFF1742	0.56	-0.8
1,768,326	-		GFF1742	0.56	-1.6
1,768,348	+		GFF1742	0.59	-0.5
1,768,356	+		GFF1742	0.61	-2.1
1,768,356	+		GFF1742	0.61	-0.4
1,768,364	-		GFF1742	0.62	-1.2
1,768,399	+		GFF1742	0.67	+0.1
1,768,407	-		GFF1742	0.68	-0.2
1,768,407	-		GFF1742	0.68	+1.3
1,768,420	+		GFF1742	0.70	-0.7
1,768,452	-		GFF1742	0.74	-1.3
1,768,476	+		GFF1742	0.78	-2.3
1,768,476	+		GFF1742	0.78	+0.5
1,768,484	-		GFF1742	0.79	+1.1
1,768,496	-		GFF1742	0.81	-1.6
1,768,529	+		GFF1742	0.85	-0.7
1,768,537	-		GFF1742	0.87	-0.7
1,768,542	-		GFF1742	0.87	-0.0
1,768,542	-		GFF1742	0.87	-1.1
1,768,551	+		GFF1742	0.89	+0.3
1,768,579	+				-0.4
1,768,579	+				-0.9
1,768,587	-				-2.1
1,768,618	+				+0.1
1,768,618	+				-0.6
1,768,626	-				-1.4
1,768,631	+				-0.2
1,768,639	-				+1.5
1,768,639	-				-1.9
1,768,645	+				-0.5
1,768,656	+				-0.6
1,768,672	+				-1.7
1,768,674	+				-0.7
1,768,674	-				-0.3
1,768,680	-				+0.0
1,768,682	+				+1.4
1,768,709	-				+0.6
1,768,709	-				-0.7
1,768,753	+		GFF1743	0.39	-2.1
1,768,753	+		GFF1743	0.39	-0.6
1,768,763	-		GFF1743	0.49	-1.7
1,768,875	+				-0.0
1,768,883	-				-0.2
1,768,897	-				+1.3
1,768,899	+				-1.5
1,768,907	-				-0.4
1,768,907	-				-2.1
1,768,907	-				-0.6
1,768,907	-				+0.3
1,768,912	-				-0.7
1,768,932	+				-1.6
1,768,932	+				-2.1
1,768,957	-		GFF1744	0.11	-1.0
1,768,972	+		GFF1744	0.13	-2.5
1,769,020	+		GFF1744	0.17	-0.3
1,769,028	-		GFF1744	0.18	-0.4
1,769,054	+		GFF1744	0.20	-0.1
1,769,064	+		GFF1744	0.21	-0.5
1,769,126	+		GFF1744	0.26	-0.9
1,769,147	+		GFF1744	0.28	-1.4
1,769,155	-		GFF1744	0.29	+0.4
1,769,160	-		GFF1744	0.29	-1.1
1,769,175	-		GFF1744	0.30	+0.5
1,769,225	+		GFF1744	0.35	+0.3
1,769,230	+		GFF1744	0.35	-1.1
1,769,238	-		GFF1744	0.36	+1.2
1,769,240	+		GFF1744	0.36	-0.4
1,769,243	-		GFF1744	0.36	-0.7
1,769,287	-		GFF1744	0.40	-1.4
1,769,329	-		GFF1744	0.44	-1.3
1,769,345	+		GFF1744	0.45	-1.6
1,769,345	+		GFF1744	0.45	-1.3
1,769,360	-		GFF1744	0.47	-0.8
1,769,374	+		GFF1744	0.48	-0.3
1,769,377	-		GFF1744	0.48	-1.1
1,769,382	-		GFF1744	0.49	-0.5
1,769,403	-		GFF1744	0.50	-0.7
1,769,456	+		GFF1744	0.55	-1.7
1,769,464	-		GFF1744	0.56	-0.5
1,769,471	-		GFF1744	0.56	-1.5
1,769,471	-		GFF1744	0.56	+0.9
1,769,527	-		GFF1744	0.61	+0.6
1,769,527	-		GFF1744	0.61	-0.6
1,769,529	+		GFF1744	0.61	-0.0
1,769,542	-		GFF1744	0.62	-0.8
1,769,547	-		GFF1744	0.63	-1.4
1,769,603	+		GFF1744	0.68	-1.6
1,769,603	+		GFF1744	0.68	-0.1
1,769,603	+		GFF1744	0.68	-2.3
1,769,810	+		GFF1744	0.86	-1.8
1,769,818	-		GFF1744	0.87	-2.6
1,769,883	-				-0.6
1,769,883	-				-0.6
1,769,893	+				-0.8
1,769,893	+				-1.2
1,769,901	-				-1.7
1,769,915	+				+0.7
1,769,926	-				-1.3
1,770,075	-				-2.1
1,770,126	+				-2.0
1,770,126	+				-1.0
1,770,126	+				-0.5
1,770,126	+				-0.7
1,770,129	-				-0.4
1,770,131	+				-0.4
1,770,134	-				-0.8
1,770,134	-				+1.2
1,770,134	-				-0.3
1,770,134	-				-2.1
1,770,134	-				-1.2
1,770,197	+		GFF1745	0.13	-1.7
1,770,267	-		GFF1745	0.17	+1.1
1,770,295	+		GFF1745	0.19	-0.5
1,770,339	-		GFF1745	0.22	-0.9
1,770,445	-		GFF1745	0.28	-0.0
1,770,508	+		GFF1745	0.32	-0.6
1,770,510	+		GFF1745	0.33	-0.5
1,770,515	+		GFF1745	0.33	-1.8
1,770,523	-		GFF1745	0.33	-2.8
1,770,561	-		GFF1745	0.36	+0.4
1,770,681	-		GFF1745	0.43	-0.7
1,770,721	-		GFF1745	0.46	-2.3
1,770,721	-		GFF1745	0.46	-0.7
1,770,748	-		GFF1745	0.48	-0.6
1,770,760	+		GFF1745	0.48	-1.0
1,770,760	+		GFF1745	0.48	-0.7
1,770,760	+		GFF1745	0.48	-2.0
1,770,764	-		GFF1745	0.49	-0.4
1,770,768	-		GFF1745	0.49	-1.6
1,770,768	-		GFF1745	0.49	+0.4
1,770,768	-		GFF1745	0.49	-0.3
1,770,769	-		GFF1745	0.49	-0.3
1,770,783	-		GFF1745	0.50	-0.0
1,770,783	-		GFF1745	0.50	-0.6
1,770,889	+		GFF1745	0.56	-1.3
1,770,897	-		GFF1745	0.57	-0.6
1,770,909	+		GFF1745	0.58	-2.3
1,770,915	-		GFF1745	0.58	-1.5
1,770,935	+		GFF1745	0.59	-0.7
1,770,942	+		GFF1745	0.60	-0.1
1,770,942	+		GFF1745	0.60	-1.6
1,770,943	-		GFF1745	0.60	-0.8
1,770,950	-		GFF1745	0.60	-0.5
1,770,950	-		GFF1745	0.60	-1.9
1,770,950	-		GFF1745	0.60	-1.0
1,770,950	-		GFF1745	0.60	-2.1
1,770,961	-		GFF1745	0.61	-1.3