Strain Fitness in Sphingobium sp. HT1-2 around GFF1624

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,651,981	+		GFF1623	0.24	-1.8
1,651,984	-		GFF1623	0.24	-1.4
1,652,090	+		GFF1623	0.34	-0.5
1,652,090	-		GFF1623	0.34	-1.4
1,652,108	+		GFF1623	0.35	-1.4
1,652,280	-		GFF1623	0.51	-0.2
1,652,291	-		GFF1623	0.52	-1.0
1,652,293	-		GFF1623	0.52	+0.4
1,652,404	-		GFF1623	0.62	-1.1
1,652,500	+		GFF1623	0.70	-1.4
1,652,500	+		GFF1623	0.70	+0.8
1,652,527	+		GFF1623	0.73	+1.0
1,652,535	-		GFF1623	0.74	+0.7
1,652,548	-		GFF1623	0.75	+1.1
1,652,573	+		GFF1623	0.77	-1.5
1,652,624	-		GFF1623	0.82	+1.9
1,652,645	-		GFF1623	0.83	-1.3
1,652,665	-		GFF1623	0.85	+0.8
1,652,713	+		GFF1623	0.90	-1.7
1,652,721	-				-1.2
1,652,721	-				-0.9
1,652,721	-				+0.1
1,652,798	+				-0.6
1,652,806	-				+0.3
1,652,844	-				+0.9
1,652,878	+				+0.5
1,652,890	+				+1.7
1,652,890	+				-0.0
1,652,893	-				+0.3
1,652,908	-				+0.2
1,652,942	-				-0.5
1,653,038	+		GFF1624	0.17	+1.0
1,653,043	+		GFF1624	0.17	+1.3
1,653,075	+		GFF1624	0.21	-0.3
1,653,113	+		GFF1624	0.26	-1.6
1,653,122	+		GFF1624	0.27	-1.2
1,653,148	-		GFF1624	0.30	-0.1
1,653,148	-		GFF1624	0.30	-0.3
1,653,189	+		GFF1624	0.35	+1.0
1,653,189	+		GFF1624	0.35	+3.3
1,653,197	-		GFF1624	0.35	-0.5
1,653,197	-		GFF1624	0.35	+0.2
1,653,197	-		GFF1624	0.35	+0.9
1,653,197	-		GFF1624	0.35	-1.7
1,653,197	-		GFF1624	0.35	-0.1
1,653,199	+		GFF1624	0.36	-1.6
1,653,199	+		GFF1624	0.36	+0.3
1,653,199	+		GFF1624	0.36	+0.6
1,653,207	-		GFF1624	0.37	-0.1
1,653,207	-		GFF1624	0.37	-2.0
1,653,207	-		GFF1624	0.37	+0.3
1,653,207	-		GFF1624	0.37	-0.2
1,653,207	-		GFF1624	0.37	-0.1
1,653,207	-		GFF1624	0.37	-0.5
1,653,207	-		GFF1624	0.37	-1.6
1,653,207	-		GFF1624	0.37	-0.1
1,653,207	-		GFF1624	0.37	+0.7
1,653,246	-		GFF1624	0.41	+0.7
1,653,332	+		GFF1624	0.51	-0.2
1,653,332	+		GFF1624	0.51	+0.1
1,653,332	+		GFF1624	0.51	-1.7
1,653,340	-		GFF1624	0.52	+0.5
1,653,340	-		GFF1624	0.52	-0.8
1,653,340	-		GFF1624	0.52	-1.1
1,653,406	-		GFF1624	0.60	-1.0
1,653,420	+		GFF1624	0.62	-2.1
1,653,428	-		GFF1624	0.63	-0.3
1,653,433	+		GFF1624	0.63	+0.3
1,653,433	+		GFF1624	0.63	-2.5
1,653,433	+		GFF1624	0.63	-1.6
1,653,439	-		GFF1624	0.64	-1.2
1,653,441	-		GFF1624	0.64	-1.3
1,653,480	+		GFF1624	0.69	-0.9
1,653,481	-		GFF1624	0.69	-0.2
1,653,495	+		GFF1624	0.70	-1.4
1,653,522	+		GFF1624	0.74	-0.7
1,653,565	+		GFF1624	0.79	-0.2
1,653,602	+		GFF1624	0.83	-1.3
1,653,607	+		GFF1624	0.84	-0.3
1,653,615	-		GFF1624	0.85	-0.1
1,653,655	-		GFF1624	0.89	-0.7
1,653,665	-				-0.4
1,653,680	+				-0.5
1,653,683	-				-0.5
1,653,688	-				-0.5
1,653,688	-				+1.3
1,653,693	-				+1.0
1,653,693	-				+0.3
1,653,702	-				+1.0
1,653,706	+				-1.2
1,653,719	-				-0.7
1,653,721	+				-0.9
1,653,721	+				+0.5
1,653,721	+				-0.3
1,653,721	+				+0.6
1,653,724	-				+1.3
1,653,729	-				-1.0
1,653,729	-				-1.3
1,653,729	-				-2.7
1,653,729	-				-0.5
1,653,729	-				+0.2
1,653,729	-				+1.2
1,653,729	-				+0.3
1,653,729	-				+0.5
1,653,729	-				+1.3
1,653,731	+				-0.4
1,653,731	+				-0.8
1,653,734	-				-1.1
1,653,734	-				-0.7
1,653,734	-				-0.5
1,653,739	-				+0.0
1,653,739	-				-0.6
1,653,741	+				+0.9
1,653,749	-				+0.1
1,653,749	-				+0.5
1,653,769	+				+0.8
1,653,769	+				-0.3
1,653,777	-				+0.4
1,653,777	-				+0.3
1,653,777	-				-0.9
1,653,777	-				+0.0
1,653,845	-				-1.3
1,653,850	+		GFF1625	0.10	-1.8
1,653,936	-		GFF1625	0.23	-2.0
1,653,946	-		GFF1625	0.25	-2.3
1,653,946	-		GFF1625	0.25	-2.4
1,653,998	+		GFF1625	0.33	-1.1
1,654,008	+		GFF1625	0.35	-1.3
1,654,050	+		GFF1625	0.41	-2.1
1,654,101	+		GFF1625	0.49	-1.9
1,654,112	+		GFF1625	0.51	-2.4
1,654,112	+		GFF1625	0.51	-2.7
1,654,112	+		GFF1625	0.51	-3.6
1,654,120	-		GFF1625	0.52	-2.6
1,654,139	+		GFF1625	0.55	-3.4
1,654,139	+		GFF1625	0.55	-2.3
1,654,139	+		GFF1625	0.55	-1.7
1,654,139	+		GFF1625	0.55	-3.4
1,654,139	+		GFF1625	0.55	-3.3
1,654,139	+		GFF1625	0.55	-1.9
1,654,139	+		GFF1625	0.55	-1.1
1,654,139	+		GFF1625	0.55	-2.2
1,654,144	+		GFF1625	0.56	-2.3
1,654,147	-		GFF1625	0.56	-2.9
1,654,147	-		GFF1625	0.56	-2.3
1,654,147	-		GFF1625	0.56	-0.8
1,654,147	-		GFF1625	0.56	-3.1
1,654,147	-		GFF1625	0.56	-3.0
1,654,147	-		GFF1625	0.56	+0.0
1,654,147	-		GFF1625	0.56	-3.5
1,654,147	-		GFF1625	0.56	-2.8
1,654,147	-		GFF1625	0.56	-2.1
1,654,147	-		GFF1625	0.56	-2.1
1,654,147	-		GFF1625	0.56	-3.4
1,654,147	-		GFF1625	0.56	-2.3
1,654,147	-		GFF1625	0.56	-0.2
1,654,147	-		GFF1625	0.56	-1.1
1,654,147	-		GFF1625	0.56	+1.9
1,654,147	-		GFF1625	0.56	-1.8
1,654,147	-		GFF1625	0.56	-1.5
1,654,147	-		GFF1625	0.56	-0.4
1,654,147	-		GFF1625	0.56	-2.1
1,654,147	-		GFF1625	0.56	-1.8
1,654,147	-		GFF1625	0.56	-3.1
1,654,147	-		GFF1625	0.56	-0.8
1,654,147	-		GFF1625	0.56	-2.4
1,654,147	-		GFF1625	0.56	-2.8
1,654,152	-		GFF1625	0.57	-2.1
1,654,152	-		GFF1625	0.57	-1.2
1,654,174	+		GFF1625	0.60	-2.4
1,654,202	+		GFF1625	0.65	-2.0
1,654,205	-		GFF1625	0.65	-0.1
1,654,210	-		GFF1625	0.66	-3.0
1,654,220	+		GFF1625	0.67	-1.6
1,654,220	+		GFF1625	0.67	-3.3
1,654,223	-		GFF1625	0.68	-2.0
1,654,228	-		GFF1625	0.69	-1.6
1,654,239	-		GFF1625	0.70	-2.3
1,654,269	+		GFF1625	0.75	-1.7
1,654,274	+		GFF1625	0.76	-2.7
1,654,300	-		GFF1625	0.80	-3.5
1,654,362	+		GFF1625	0.89	-1.4
1,654,363	-		GFF1625	0.90	-1.8
1,654,373	+				-2.2
1,654,375	+				+0.3
1,654,381	-				-2.4
1,654,383	-				-2.6
1,654,383	-				-0.8
1,654,383	-				-1.9
1,654,391	-				-1.8
1,654,391	-				-0.7
1,654,393	+				-1.0
1,654,393	+				-0.7
1,654,401	-				-1.6
1,654,437	+				-1.1
1,654,439	+				+0.8
1,654,444	+				-0.3
1,654,445	-				-0.1
1,654,447	-				-1.3
1,654,534	+				-2.2
1,654,675	+		GFF1626	0.12	-1.3