Strain Fitness in Sphingobium sp. HT1-2 around GFF1581

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,610,345	-		GFF1580	0.57	-2.3
1,610,356	+		GFF1580	0.58	+0.6
1,610,356	+		GFF1580	0.58	+0.1
1,610,356	+		GFF1580	0.58	+0.3
1,610,356	+		GFF1580	0.58	-0.8
1,610,356	+		GFF1580	0.58	-1.4
1,610,356	+		GFF1580	0.58	+0.0
1,610,356	+		GFF1580	0.58	+0.1
1,610,356	+		GFF1580	0.58	-0.4
1,610,364	-		GFF1580	0.58	-1.2
1,610,364	-		GFF1580	0.58	+0.3
1,610,364	-		GFF1580	0.58	-1.7
1,610,366	+		GFF1580	0.58	-0.5
1,610,369	-		GFF1580	0.59	+0.1
1,610,400	+		GFF1580	0.60	+1.1
1,610,416	-		GFF1580	0.61	-0.9
1,610,425	+		GFF1580	0.61	+1.1
1,610,433	-		GFF1580	0.61	-1.7
1,610,460	-		GFF1580	0.63	+0.4
1,610,488	-		GFF1580	0.64	-0.0
1,610,497	+		GFF1580	0.64	-1.2
1,610,502	+		GFF1580	0.65	-0.3
1,610,502	+		GFF1580	0.65	+0.0
1,610,505	-		GFF1580	0.65	-0.4
1,610,505	-		GFF1580	0.65	+0.4
1,610,510	-		GFF1580	0.65	-1.2
1,610,510	-		GFF1580	0.65	+0.2
1,610,510	-		GFF1580	0.65	-0.1
1,610,566	+		GFF1580	0.68	-0.5
1,610,596	-		GFF1580	0.69	+0.3
1,610,603	+		GFF1580	0.69	-0.1
1,610,605	+		GFF1580	0.69	+0.2
1,610,605	+		GFF1580	0.69	+1.6
1,610,613	-		GFF1580	0.70	+0.7
1,610,613	-		GFF1580	0.70	+0.6
1,610,636	+		GFF1580	0.71	-0.3
1,610,646	+		GFF1580	0.71	+0.2
1,610,646	+		GFF1580	0.71	-0.6
1,610,646	+		GFF1580	0.71	-0.5
1,610,651	+		GFF1580	0.71	+1.4
1,610,654	-		GFF1580	0.72	-1.8
1,610,659	-		GFF1580	0.72	-2.1
1,610,659	-		GFF1580	0.72	-0.5
1,610,666	+		GFF1580	0.72	+1.1
1,610,666	+		GFF1580	0.72	+0.3
1,610,666	+		GFF1580	0.72	-0.7
1,610,668	+		GFF1580	0.72	-0.7
1,610,673	+		GFF1580	0.72	-1.1
1,610,674	-		GFF1580	0.73	-1.3
1,610,681	-		GFF1580	0.73	-0.9
1,610,681	-		GFF1580	0.73	-1.3
1,610,710	-		GFF1580	0.74	-0.6
1,610,736	+		GFF1580	0.75	-1.9
1,610,736	+		GFF1580	0.75	+0.1
1,610,754	+		GFF1580	0.76	-0.7
1,610,767	-		GFF1580	0.77	-2.2
1,610,789	+		GFF1580	0.78	+0.7
1,610,805	+		GFF1580	0.79	-0.3
1,610,808	-		GFF1580	0.79	+1.0
1,610,810	+		GFF1580	0.79	+0.7
1,610,815	-		GFF1580	0.79	-0.3
1,610,825	-		GFF1580	0.79	-1.1
1,610,825	-		GFF1580	0.79	+0.2
1,610,825	-		GFF1580	0.79	+0.5
1,610,826	+		GFF1580	0.80	-0.5
1,610,826	+		GFF1580	0.80	+1.0
1,610,834	-		GFF1580	0.80	-2.5
1,610,842	+		GFF1580	0.80	-1.1
1,610,842	+		GFF1580	0.80	-0.4
1,610,850	-		GFF1580	0.81	+0.6
1,610,856	+		GFF1580	0.81	+0.5
1,610,873	+		GFF1580	0.82	-0.2
1,610,878	+		GFF1580	0.82	-0.2
1,610,878	+		GFF1580	0.82	-0.0
1,610,878	+		GFF1580	0.82	+0.7
1,610,879	+		GFF1580	0.82	+1.9
1,610,886	-		GFF1580	0.82	+0.7
1,610,886	-		GFF1580	0.82	-1.2
1,610,927	-		GFF1580	0.84	+1.0
1,610,932	-		GFF1580	0.84	-0.5
1,610,959	+		GFF1580	0.86	-0.3
1,610,973	-		GFF1580	0.86	-0.4
1,610,994	+		GFF1580	0.87	-1.9
1,611,002	-		GFF1580	0.88	+0.5
1,611,004	+		GFF1580	0.88	-0.2
1,611,004	+		GFF1580	0.88	-0.8
1,611,021	+		GFF1580	0.88	+0.1
1,611,029	-		GFF1580	0.89	-1.8
1,611,053	-		GFF1580	0.90	+0.4
1,611,071	+				-0.3
1,611,071	+				-0.3
1,611,071	+				+1.3
1,611,079	-				-0.7
1,611,116	+				-1.3
1,611,116	+				-1.0
1,611,117	-				+0.3
1,611,132	+				-1.0
1,611,138	+				+0.7
1,611,152	+				-0.9
1,611,160	-				-0.2
1,611,171	+				-0.0
1,611,176	-				-0.8
1,611,190	+				+0.6
1,611,200	+				+0.8
1,611,241	-				+0.3
1,611,243	+				+0.9
1,611,248	+				+0.1
1,611,261	-				-1.0
1,611,284	+				-0.3
1,611,297	+				-0.8
1,611,297	+				+0.8
1,611,305	-				+0.2
1,611,305	-				-0.7
1,611,305	-				-0.7
1,611,354	+				-2.1
1,611,354	+				-0.3
1,611,359	+				-0.7
1,611,391	+				-0.2
1,611,396	-				+0.7
1,611,396	-				+0.8
1,611,418	+				+0.8
1,611,432	-				+1.3
1,611,432	-				+0.8
1,611,440	-		GFF1581	0.10	+0.4
1,611,461	-		GFF1581	0.12	-0.2
1,611,485	-		GFF1581	0.15	+0.3
1,611,494	+		GFF1581	0.15	+0.7
1,611,523	+		GFF1581	0.18	+0.3
1,611,531	-		GFF1581	0.19	-0.9
1,611,531	-		GFF1581	0.19	+0.3
1,611,552	-		GFF1581	0.21	+0.8
1,611,571	+		GFF1581	0.23	+0.3
1,611,579	-		GFF1581	0.24	+1.0
1,611,645	-		GFF1581	0.31	+0.1
1,611,647	+		GFF1581	0.31	-1.0
1,611,758	+		GFF1581	0.42	+0.3
1,611,758	+		GFF1581	0.42	+1.0
1,611,767	-		GFF1581	0.43	+0.9
1,611,775	+		GFF1581	0.44	-1.7
1,611,783	-		GFF1581	0.44	-0.4
1,611,793	+		GFF1581	0.45	+0.4
1,611,793	+		GFF1581	0.45	-0.4
1,611,793	+		GFF1581	0.45	+0.1
1,611,793	+		GFF1581	0.45	+0.9
1,611,793	+		GFF1581	0.45	+0.6
1,611,795	-		GFF1581	0.46	+1.0
1,611,801	-		GFF1581	0.46	+0.6
1,611,801	-		GFF1581	0.46	-1.3
1,611,801	-		GFF1581	0.46	+0.8
1,611,801	-		GFF1581	0.46	+0.7
1,611,801	-		GFF1581	0.46	+0.4
1,611,824	+		GFF1581	0.48	+0.4
1,611,824	+		GFF1581	0.48	+0.1
1,611,826	+		GFF1581	0.49	+0.1
1,611,833	+		GFF1581	0.49	+0.3
1,611,853	-		GFF1581	0.51	+1.1
1,611,873	+		GFF1581	0.53	+0.8
1,611,893	+		GFF1581	0.55	+0.7
1,611,901	-		GFF1581	0.56	-0.6
1,611,901	-		GFF1581	0.56	-1.7
1,611,901	-		GFF1581	0.56	-0.0
1,611,907	+		GFF1581	0.57	-0.2
1,611,915	-		GFF1581	0.57	+1.0
1,611,917	+		GFF1581	0.58	-0.6
1,611,917	+		GFF1581	0.58	-0.2
1,611,925	-		GFF1581	0.58	-1.3
1,611,925	-		GFF1581	0.58	-1.4
1,611,925	-		GFF1581	0.58	-0.2
1,611,925	-		GFF1581	0.58	+0.5
1,611,934	+		GFF1581	0.59	+1.0
1,611,934	+		GFF1581	0.59	+0.6
1,611,934	+		GFF1581	0.59	-0.9
1,611,934	+		GFF1581	0.59	+0.4
1,611,944	+		GFF1581	0.60	-0.5
1,611,950	+		GFF1581	0.61	+1.4
1,611,958	-		GFF1581	0.62	+2.1
1,611,967	-		GFF1581	0.63	-0.3
1,611,997	+		GFF1581	0.66	-1.8
1,611,997	+		GFF1581	0.66	+1.5
1,612,005	-		GFF1581	0.66	-0.7
1,612,010	+		GFF1581	0.67	+0.6
1,612,012	+		GFF1581	0.67	+1.7
1,612,015	+		GFF1581	0.67	+0.1
1,612,020	-		GFF1581	0.68	-0.9
1,612,020	-		GFF1581	0.68	-0.2
1,612,020	-		GFF1581	0.68	+1.6
1,612,039	+		GFF1581	0.70	+2.0
1,612,102	-		GFF1581	0.76	-0.8
1,612,102	-		GFF1581	0.76	-0.6
1,612,123	-		GFF1581	0.78	+0.4
1,612,134	+		GFF1581	0.79	-0.4
1,612,142	-		GFF1581	0.80	-0.6
1,612,142	-		GFF1581	0.80	+0.3
1,612,275	-				-2.0
1,612,311	-				+1.4
1,612,311	-				+1.7
1,612,326	+				+0.6
1,612,334	-				+0.5
1,612,354	+				-0.6
1,612,362	-				+0.9
1,612,417	+		GFF1582	0.14	+1.1
1,612,417	+		GFF1582	0.14	+0.4
1,612,419	+		GFF1582	0.14	-0.3
1,612,425	-		GFF1582	0.16	+0.3
1,612,425	-		GFF1582	0.16	-1.8
1,612,437	+		GFF1582	0.18	-1.1
1,612,437	+		GFF1582	0.18	+0.4
1,612,487	+		GFF1582	0.29	-1.0
1,612,511	+		GFF1582	0.34	-0.3
1,612,511	+		GFF1582	0.34	+1.1
1,612,511	+		GFF1582	0.34	-0.1
1,612,516	+		GFF1582	0.35	-0.1
1,612,516	+		GFF1582	0.35	+0.2
1,612,516	+		GFF1582	0.35	-1.3
1,612,516	+		GFF1582	0.35	-0.7
1,612,516	+		GFF1582	0.35	+0.6
1,612,519	-		GFF1582	0.35	+0.3
1,612,519	-		GFF1582	0.35	-0.6
1,612,519	-		GFF1582	0.35	-0.9
1,612,521	+		GFF1582	0.36	-0.8
1,612,521	+		GFF1582	0.36	+0.9
1,612,521	+		GFF1582	0.36	-0.3
1,612,524	-		GFF1582	0.36	-0.3
1,612,524	-		GFF1582	0.36	-0.8
1,612,524	-		GFF1582	0.36	-1.7
1,612,524	-		GFF1582	0.36	-0.9
1,612,529	-		GFF1582	0.37	-1.0
1,612,529	-		GFF1582	0.37	-1.6
1,612,529	-		GFF1582	0.37	-0.3
1,612,538	+		GFF1582	0.39	+1.3
1,612,543	+		GFF1582	0.40	+1.4
1,612,546	-		GFF1582	0.41	+1.4
1,612,546	-		GFF1582	0.41	-1.2
1,612,560	+		GFF1582	0.44	-1.7
1,612,560	+		GFF1582	0.44	+1.1
1,612,560	+		GFF1582	0.44	-0.8
1,612,568	-		GFF1582	0.45	-2.8
1,612,568	-		GFF1582	0.45	-0.7
1,612,568	-		GFF1582	0.45	-0.5
1,612,585	-		GFF1582	0.49	-2.0
1,612,592	+		GFF1582	0.51	-1.6
1,612,607	+		GFF1582	0.54	+0.1
1,612,607	+		GFF1582	0.54	+0.0
1,612,607	+		GFF1582	0.54	-0.4
1,612,607	+		GFF1582	0.54	-1.4
1,612,615	-		GFF1582	0.55	+0.9
1,612,649	-		GFF1582	0.62	-0.3
1,612,659	+		GFF1582	0.65	+0.6
1,612,664	+		GFF1582	0.66	+1.1
1,612,667	-		GFF1582	0.66	-0.2
1,612,667	-		GFF1582	0.66	-2.2
1,612,667	-		GFF1582	0.66	+0.4
1,612,679	+		GFF1582	0.69	+0.1
1,612,701	+		GFF1582	0.73	+0.1
1,612,701	+		GFF1582	0.73	-0.6
1,612,707	-		GFF1582	0.75	+0.2
1,612,707	-		GFF1582	0.75	+0.8
1,612,747	+		GFF1582	0.83	-0.4
1,612,750	-		GFF1582	0.84	+1.1
1,612,784	-				-0.3
1,612,790	+				-2.5
1,612,797	+				-0.9
1,612,798	-				-0.3
1,612,800	-				-1.4
1,612,805	-				-0.1
1,612,823	+				-0.6
1,612,823	+				+0.1
1,612,828	+				-1.3
1,612,828	+				+0.1
1,612,836	-				+0.2
1,612,836	-				+0.9
1,612,842	+				-2.6
1,612,868	+				-1.6
1,612,872	+				-1.3
1,612,988	+		GFF1583	0.22	-1.4
1,613,091	+		GFF1583	0.37	-1.7
1,613,198	+		GFF1583	0.53	-0.4
1,613,198	+		GFF1583	0.53	-1.7
1,613,201	-		GFF1583	0.53	-1.6
1,613,282	-		GFF1583	0.65	-1.4
1,613,303	-		GFF1583	0.68	-2.3
1,613,308	-		GFF1583	0.69	-1.4
1,613,309	-		GFF1583	0.69	-2.0