Strain Fitness in Sphingobium sp. HT1-2 around GFF1576

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,603,607	+		GFF1574	0.74	-0.7
1,603,608	-		GFF1574	0.74	-0.2
1,603,612	+		GFF1574	0.74	+0.9
1,603,620	-		GFF1574	0.75	-0.5
1,603,641	-		GFF1574	0.78	-0.8
1,603,660	-		GFF1574	0.80	-0.1
1,603,666	-		GFF1574	0.80	+0.6
1,603,673	+		GFF1574	0.81	+0.3
1,603,673	+		GFF1574	0.81	-0.9
1,603,700	-		GFF1574	0.84	+0.0
1,603,711	+		GFF1574	0.86	-0.7
1,603,716	+		GFF1574	0.86	-0.5
1,603,724	-		GFF1574	0.87	-0.6
1,603,724	-		GFF1574	0.87	+0.7
1,603,753	-				+0.1
1,603,763	+				-0.4
1,603,775	-				+0.7
1,603,804	+				-1.1
1,603,805	-				+0.1
1,603,809	+				-0.2
1,603,817	-				-1.7
1,603,817	-				+0.5
1,604,442	-				+0.7
1,604,442	-				-1.7
1,604,442	-				-2.3
1,604,447	-				-2.8
1,604,448	-				+0.1
1,604,452	+				+0.8
1,604,460	-				-0.4
1,604,477	-				+0.6
1,604,493	-				-0.1
1,604,495	+				+1.2
1,604,498	-				+1.0
1,604,503	-				+0.4
1,604,514	+				-0.2
1,604,517	+				+1.1
1,604,522	-				-0.2
1,604,530	-				+0.4
1,604,530	-				-1.2
1,604,532	-				+0.1
1,604,593	+				+1.0
1,604,630	-				-0.2
1,604,630	-				-0.7
1,604,630	-				-2.9
1,604,640	-				-0.4
1,604,667	+		GFF1576	0.12	-0.4
1,604,667	+		GFF1576	0.12	+0.1
1,604,672	+		GFF1576	0.13	-1.0
1,604,672	+		GFF1576	0.13	-1.2
1,604,679	+		GFF1576	0.14	-0.7
1,604,680	-		GFF1576	0.14	-1.6
1,604,718	-		GFF1576	0.20	-2.3
1,604,731	-		GFF1576	0.23	-0.3
1,604,792	+		GFF1576	0.33	-0.7
1,604,800	-		GFF1576	0.34	+0.9
1,604,800	-		GFF1576	0.34	-0.9
1,604,800	-		GFF1576	0.34	-0.8
1,604,815	-		GFF1576	0.37	-0.8
1,604,855	-		GFF1576	0.43	-0.8
1,604,856	+		GFF1576	0.44	-0.2
1,604,863	-		GFF1576	0.45	-1.6
1,604,876	-		GFF1576	0.47	-0.4
1,604,888	+		GFF1576	0.49	+0.5
1,604,888	+		GFF1576	0.49	-0.3
1,604,888	+		GFF1576	0.49	-0.8
1,604,888	+		GFF1576	0.49	-0.5
1,604,891	-		GFF1576	0.49	-1.2
1,604,896	+		GFF1576	0.50	+0.5
1,604,896	-		GFF1576	0.50	-1.3
1,604,896	-		GFF1576	0.50	-1.1
1,604,896	-		GFF1576	0.50	-2.0
1,604,913	-		GFF1576	0.53	-0.1
1,604,938	+		GFF1576	0.57	-0.4
1,604,955	-		GFF1576	0.60	-1.0
1,604,987	-		GFF1576	0.65	+0.8
1,605,008	+		GFF1576	0.69	-0.9
1,605,022	-		GFF1576	0.71	+1.0
1,605,037	-		GFF1576	0.74	+0.1
1,605,066	+		GFF1576	0.79	-2.4
1,605,071	+		GFF1576	0.80	-1.9
1,605,074	-		GFF1576	0.80	-0.6
1,605,075	+		GFF1576	0.80	-1.3
1,605,081	+		GFF1576	0.81	+0.6
1,605,083	-		GFF1576	0.82	+0.6
1,605,094	+		GFF1576	0.83	-0.1
1,605,094	+		GFF1576	0.83	-0.7
1,605,099	+		GFF1576	0.84	-0.1
1,605,128	+		GFF1576	0.89	-0.2
1,605,133	+				+1.0
1,605,133	+				-0.2
1,605,141	-				-2.1
1,605,161	+				+0.0
1,605,162	-				-0.3
1,605,168	-				-2.0
1,605,211	-				-1.5
1,605,217	+				+0.4
1,605,217	+				-0.3
1,605,222	+				-1.4
1,605,230	-				-0.8
1,605,230	-				-1.0
1,605,230	-				+0.6
1,605,230	-				-0.7
1,605,230	-				-0.1
1,605,230	-				-0.0
1,605,230	-				-0.2
1,605,238	+				-1.1
1,605,240	-				-1.1
1,605,256	+				+0.1
1,605,264	-				+0.8
1,605,264	-				+0.4
1,605,282	+				+1.5
1,605,282	+				+0.1
1,605,288	+				+1.3
1,605,290	-				-1.3
1,605,290	-				+0.0
1,605,290	-				-0.4
1,605,293	+				+0.3
1,605,296	-				-0.2
1,605,296	-				-1.8
1,605,296	-				-1.3
1,605,298	+				-1.3
1,605,311	-				+1.3
1,605,321	-				-0.0
1,605,321	-				-0.9
1,605,321	-				-0.5
1,605,321	-				+0.7
1,605,353	+				-1.1
1,605,356	+				-0.4
1,605,364	-				+1.6
1,605,364	-				+0.2
1,605,364	-				-1.3
1,605,364	-				+0.0
1,605,364	-				-0.2
1,605,366	-				-0.5
1,605,369	-				-0.5
1,605,401	-				+0.1
1,605,429	+		GFF1577	0.12	-1.6
1,605,442	+		GFF1577	0.12	+1.8
1,605,442	-		GFF1577	0.12	+0.6
1,605,444	+		GFF1577	0.13	-0.7
1,605,444	+		GFF1577	0.13	+1.1
1,605,444	+		GFF1577	0.13	+0.2
1,605,447	-		GFF1577	0.13	-1.0
1,605,452	-		GFF1577	0.13	-0.1
1,605,455	-		GFF1577	0.13	-0.1
1,605,455	-		GFF1577	0.13	+0.9
1,605,461	+		GFF1577	0.14	-0.6
1,605,461	+		GFF1577	0.14	-1.4
1,605,462	-		GFF1577	0.14	+0.8
1,605,468	+		GFF1577	0.14	+0.1
1,605,468	+		GFF1577	0.14	+0.8
1,605,468	+		GFF1577	0.14	-0.9
1,605,469	-		GFF1577	0.14	+0.5
1,605,469	-		GFF1577	0.14	-0.5
1,605,469	-		GFF1577	0.14	+1.4
1,605,469	-		GFF1577	0.14	+0.6
1,605,469	-		GFF1577	0.14	-0.6
1,605,469	-		GFF1577	0.14	+0.7
1,605,469	-		GFF1577	0.14	-0.8
1,605,476	-		GFF1577	0.14	+1.3
1,605,476	-		GFF1577	0.14	+1.1
1,605,491	-		GFF1577	0.15	+1.0
1,605,491	-		GFF1577	0.15	-0.9
1,605,491	-		GFF1577	0.15	-0.2
1,605,495	+		GFF1577	0.16	+0.6
1,605,510	-		GFF1577	0.16	-1.8
1,605,512	+		GFF1577	0.17	+1.3
1,605,553	+		GFF1577	0.19	-1.0
1,605,553	+		GFF1577	0.19	-0.2
1,605,555	+		GFF1577	0.19	-0.4
1,605,561	-		GFF1577	0.20	-0.5
1,605,561	-		GFF1577	0.20	-0.4
1,605,567	-		GFF1577	0.20	+0.3
1,605,567	-		GFF1577	0.20	+1.0
1,605,568	-		GFF1577	0.20	-0.6
1,605,572	-		GFF1577	0.20	-1.0
1,605,596	-		GFF1577	0.22	-0.8
1,605,596	-		GFF1577	0.22	-1.7
1,605,598	+		GFF1577	0.22	+0.2
1,605,603	+		GFF1577	0.22	-2.5
1,605,603	+		GFF1577	0.22	-0.4
1,605,604	-		GFF1577	0.22	+0.1
1,605,604	-		GFF1577	0.22	-0.2
1,605,611	-		GFF1577	0.23	+0.9
1,605,616	+		GFF1577	0.23	+2.1
1,605,630	+		GFF1577	0.24	+0.6
1,605,630	+		GFF1577	0.24	-0.9
1,605,638	-		GFF1577	0.24	+0.8
1,605,640	+		GFF1577	0.24	+1.0
1,605,645	+		GFF1577	0.25	-0.7
1,605,658	+		GFF1577	0.25	+0.1
1,605,658	+		GFF1577	0.25	+0.0
1,605,658	+		GFF1577	0.25	-0.4
1,605,658	+		GFF1577	0.25	-1.3
1,605,666	-		GFF1577	0.26	+0.2
1,605,707	+		GFF1577	0.28	+0.1
1,605,712	+		GFF1577	0.29	+0.3
1,605,715	-		GFF1577	0.29	+1.1
1,605,720	-		GFF1577	0.29	+0.4
1,605,727	+		GFF1577	0.29	-1.6
1,605,735	-		GFF1577	0.30	+0.9
1,605,743	+		GFF1577	0.30	+0.7
1,605,746	+		GFF1577	0.31	+0.7
1,605,753	-		GFF1577	0.31	-2.1
1,605,753	-		GFF1577	0.31	-0.7
1,605,753	-		GFF1577	0.31	-0.9
1,605,753	-		GFF1577	0.31	-0.9
1,605,753	-		GFF1577	0.31	+0.7
1,605,753	-		GFF1577	0.31	-0.7
1,605,753	-		GFF1577	0.31	+0.1
1,605,753	-		GFF1577	0.31	-0.4
1,605,753	-		GFF1577	0.31	-2.0
1,605,753	-		GFF1577	0.31	-1.3
1,605,795	+		GFF1577	0.34	-0.1
1,605,795	+		GFF1577	0.34	+0.6
1,605,795	+		GFF1577	0.34	+0.6
1,605,803	-		GFF1577	0.34	+0.7
1,605,834	+		GFF1577	0.36	+0.0
1,605,837	-		GFF1577	0.36	-0.3
1,605,853	+		GFF1577	0.37	-0.1
1,605,860	+		GFF1577	0.37	+0.4
1,605,861	-		GFF1577	0.37	+0.1
1,605,861	-		GFF1577	0.37	+0.4
1,605,861	-		GFF1577	0.37	-1.6
1,605,861	-		GFF1577	0.37	-0.6
1,605,861	-		GFF1577	0.37	-0.6
1,605,863	-		GFF1577	0.38	+0.1
1,605,865	+		GFF1577	0.38	+0.2
1,605,877	+		GFF1577	0.38	+0.5
1,605,877	+		GFF1577	0.38	+0.0
1,605,877	+		GFF1577	0.38	+0.0
1,605,878	-		GFF1577	0.38	-0.9
1,605,880	-		GFF1577	0.39	+1.5
1,605,885	-		GFF1577	0.39	-0.3
1,605,885	-		GFF1577	0.39	-0.3
1,605,885	-		GFF1577	0.39	+0.3
1,605,885	-		GFF1577	0.39	-1.1
1,605,885	-		GFF1577	0.39	+0.4
1,605,885	-		GFF1577	0.39	-0.5
1,605,909	+		GFF1577	0.40	+1.0
1,605,913	+		GFF1577	0.41	+0.1
1,605,913	+		GFF1577	0.41	-0.4
1,605,915	-		GFF1577	0.41	+0.5
1,605,916	-		GFF1577	0.41	+0.9
1,605,918	+		GFF1577	0.41	+0.5
1,605,921	-		GFF1577	0.41	-0.3
1,605,933	+		GFF1577	0.42	-0.0
1,605,938	+		GFF1577	0.42	-0.0
1,605,938	+		GFF1577	0.42	-0.3
1,605,948	-		GFF1577	0.43	+0.3
1,605,954	+		GFF1577	0.43	+0.5
1,605,962	-		GFF1577	0.44	+0.7
1,605,977	-		GFF1577	0.44	+0.6
1,606,005	+		GFF1577	0.46	-0.6
1,606,008	-		GFF1577	0.46	-1.3
1,606,013	-		GFF1577	0.47	-0.4
1,606,013	-		GFF1577	0.47	+0.7
1,606,020	+		GFF1577	0.47	-0.3
1,606,031	+		GFF1577	0.48	+1.2
1,606,031	+		GFF1577	0.48	+0.5
1,606,067	+		GFF1577	0.50	+0.1
1,606,075	-		GFF1577	0.50	-1.9
1,606,097	+		GFF1577	0.52	+0.6
1,606,102	+		GFF1577	0.52	-0.4
1,606,107	+		GFF1577	0.52	+0.4
1,606,107	+		GFF1577	0.52	+0.6
1,606,107	+		GFF1577	0.52	-0.1
1,606,114	+		GFF1577	0.53	+0.4
1,606,115	-		GFF1577	0.53	+0.7
1,606,115	-		GFF1577	0.53	-0.5
1,606,115	-		GFF1577	0.53	+0.0
1,606,129	+		GFF1577	0.54	+0.3
1,606,129	+		GFF1577	0.54	-0.7
1,606,129	+		GFF1577	0.54	+0.0
1,606,137	-		GFF1577	0.54	+0.0
1,606,137	-		GFF1577	0.54	+0.7
1,606,137	-		GFF1577	0.54	-1.7
1,606,137	-		GFF1577	0.54	-0.1
1,606,137	-		GFF1577	0.54	+0.4
1,606,137	-		GFF1577	0.54	+0.4
1,606,137	-		GFF1577	0.54	+1.5
1,606,154	-		GFF1577	0.55	+0.3