Strain Fitness in Sphingobium sp. HT1-2 around GFF1551

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,582,983	+		GFF1550	0.36	-1.6
1,582,988	+		GFF1550	0.36	+1.1
1,582,994	+		GFF1550	0.36	-0.6
1,583,002	-		GFF1550	0.37	-0.2
1,583,002	-		GFF1550	0.37	-0.9
1,583,023	-		GFF1550	0.38	-0.2
1,583,029	+		GFF1550	0.39	-1.8
1,583,030	+		GFF1550	0.39	-0.7
1,583,033	-		GFF1550	0.39	-0.5
1,583,033	-		GFF1550	0.39	-0.9
1,583,033	-		GFF1550	0.39	-1.7
1,583,033	-		GFF1550	0.39	-0.8
1,583,033	-		GFF1550	0.39	-0.7
1,583,054	-		GFF1550	0.40	-1.3
1,583,054	-		GFF1550	0.40	-0.8
1,583,070	+		GFF1550	0.41	-0.5
1,583,076	+		GFF1550	0.42	-0.4
1,583,095	+		GFF1550	0.43	-1.6
1,583,100	+		GFF1550	0.43	-0.9
1,583,108	-		GFF1550	0.44	+0.6
1,583,108	-		GFF1550	0.44	+1.0
1,583,123	-		GFF1550	0.45	-0.4
1,583,133	+		GFF1550	0.45	+0.1
1,583,133	+		GFF1550	0.45	+0.2
1,583,138	+		GFF1550	0.46	+0.9
1,583,141	-		GFF1550	0.46	+0.2
1,583,154	-		GFF1550	0.47	-0.6
1,583,165	+		GFF1550	0.47	+1.8
1,583,173	-		GFF1550	0.48	+0.6
1,583,173	-		GFF1550	0.48	-0.3
1,583,199	-		GFF1550	0.50	-1.3
1,583,207	+		GFF1550	0.50	-0.4
1,583,207	+		GFF1550	0.50	-0.5
1,583,207	+		GFF1550	0.50	-0.3
1,583,207	+		GFF1550	0.50	+1.0
1,583,207	+		GFF1550	0.50	-0.1
1,583,207	+		GFF1550	0.50	-0.1
1,583,207	+		GFF1550	0.50	-0.5
1,583,207	+		GFF1550	0.50	+1.0
1,583,207	+		GFF1550	0.50	+1.3
1,583,207	+		GFF1550	0.50	+0.1
1,583,207	+		GFF1550	0.50	-0.6
1,583,207	+		GFF1550	0.50	-1.0
1,583,207	+		GFF1550	0.50	+0.2
1,583,207	+		GFF1550	0.50	+0.1
1,583,207	+		GFF1550	0.50	-1.5
1,583,207	+		GFF1550	0.50	+0.1
1,583,207	+		GFF1550	0.50	-0.1
1,583,215	-		GFF1550	0.51	-0.7
1,583,215	-		GFF1550	0.51	-1.2
1,583,215	-		GFF1550	0.51	-1.3
1,583,215	-		GFF1550	0.51	+0.7
1,583,215	-		GFF1550	0.51	-1.8
1,583,215	-		GFF1550	0.51	-0.2
1,583,215	-		GFF1550	0.51	-0.2
1,583,215	-		GFF1550	0.51	-0.3
1,583,215	-		GFF1550	0.51	+1.4
1,583,215	-		GFF1550	0.51	+1.2
1,583,215	-		GFF1550	0.51	+1.1
1,583,215	-		GFF1550	0.51	+1.4
1,583,215	-		GFF1550	0.51	-0.9
1,583,215	-		GFF1550	0.51	-0.7
1,583,215	-		GFF1550	0.51	+0.2
1,583,215	-		GFF1550	0.51	+0.6
1,583,215	-		GFF1550	0.51	+0.2
1,583,215	-		GFF1550	0.51	-0.4
1,583,216	+		GFF1550	0.51	-2.4
1,583,220	-		GFF1550	0.51	+0.4
1,583,225	-		GFF1550	0.51	+0.8
1,583,225	-		GFF1550	0.51	-0.8
1,583,225	-		GFF1550	0.51	+0.5
1,583,238	+		GFF1550	0.52	+0.8
1,583,273	+		GFF1550	0.54	+1.6
1,583,273	+		GFF1550	0.54	+0.7
1,583,280	-		GFF1550	0.55	-0.3
1,583,281	-		GFF1550	0.55	-1.3
1,583,281	-		GFF1550	0.55	+1.0
1,583,282	+		GFF1550	0.55	-0.4
1,583,290	-		GFF1550	0.55	-0.1
1,583,290	-		GFF1550	0.55	+0.6
1,583,290	-		GFF1550	0.55	+0.9
1,583,336	-		GFF1550	0.58	-1.7
1,583,336	-		GFF1550	0.58	-0.1
1,583,350	-		GFF1550	0.59	+0.1
1,583,364	+		GFF1550	0.60	-0.4
1,583,364	+		GFF1550	0.60	+0.6
1,583,367	-		GFF1550	0.60	-0.1
1,583,369	+		GFF1550	0.61	+0.6
1,583,372	-		GFF1550	0.61	+0.7
1,583,372	-		GFF1550	0.61	-0.9
1,583,372	-		GFF1550	0.61	-0.5
1,583,372	-		GFF1550	0.61	+1.2
1,583,377	-		GFF1550	0.61	+0.6
1,583,403	+		GFF1550	0.63	-0.2
1,583,411	-		GFF1550	0.63	+0.2
1,583,412	-		GFF1550	0.63	+0.7
1,583,428	-		GFF1550	0.64	+0.3
1,583,449	+		GFF1550	0.66	+0.6
1,583,449	+		GFF1550	0.66	+0.1
1,583,449	+		GFF1550	0.66	-0.2
1,583,457	-		GFF1550	0.66	-2.2
1,583,457	-		GFF1550	0.66	-1.9
1,583,457	-		GFF1550	0.66	-1.6
1,583,466	-		GFF1550	0.67	-0.2
1,583,474	+		GFF1550	0.67	-0.3
1,583,475	+		GFF1550	0.67	-0.5
1,583,477	+		GFF1550	0.68	+0.4
1,583,480	+		GFF1550	0.68	-0.7
1,583,482	+		GFF1550	0.68	-1.3
1,583,483	-		GFF1550	0.68	+0.3
1,583,483	-		GFF1550	0.68	-1.7
1,583,483	-		GFF1550	0.68	-0.8
1,583,483	-		GFF1550	0.68	-1.3
1,583,502	-		GFF1550	0.69	-0.9
1,583,503	-		GFF1550	0.69	+1.0
1,583,536	+		GFF1550	0.71	+1.5
1,583,544	-		GFF1550	0.72	+0.6
1,583,554	-		GFF1550	0.73	-1.9
1,583,559	-		GFF1550	0.73	+0.7
1,583,617	+		GFF1550	0.77	-0.4
1,583,617	+		GFF1550	0.77	-1.3
1,583,617	+		GFF1550	0.77	-2.5
1,583,618	-		GFF1550	0.77	-0.7
1,583,625	-		GFF1550	0.77	-0.3
1,583,627	-		GFF1550	0.77	+0.7
1,583,627	-		GFF1550	0.77	-1.2
1,583,655	+		GFF1550	0.79	-1.3
1,583,694	+		GFF1550	0.82	-0.4
1,583,702	-		GFF1550	0.82	-0.9
1,583,707	-		GFF1550	0.82	-1.1
1,583,719	-		GFF1550	0.83	-0.4
1,583,729	+		GFF1550	0.84	+0.3
1,583,729	+		GFF1550	0.84	-0.5
1,583,729	+		GFF1550	0.84	-0.8
1,583,734	+		GFF1550	0.84	-0.3
1,583,737	-		GFF1550	0.84	-0.2
1,583,763	-		GFF1550	0.86	+0.2
1,583,777	-		GFF1550	0.87	-0.0
1,583,778	-		GFF1550	0.87	-0.7
1,583,782	+		GFF1550	0.87	+1.0
1,583,782	+		GFF1550	0.87	-0.5
1,583,783	-		GFF1550	0.87	-0.6
1,583,785	-		GFF1550	0.87	-1.6
1,583,785	-		GFF1550	0.87	-0.4
1,583,785	-		GFF1550	0.87	+0.9
1,583,819	+		GFF1550	0.90	+0.3
1,583,835	+				+0.4
1,583,859	-				-1.0
1,583,886	+				+0.2
1,583,886	+				-0.0
1,583,893	-				+0.1
1,583,894	-				+0.4
1,583,894	-				+0.1
1,583,894	-				+0.5
1,583,907	-				-1.5
1,583,917	+				-0.7
1,583,917	+				+0.1
1,583,919	-				-2.2
1,583,921	+				+0.2
1,583,921	+				-0.8
1,583,925	-				-1.3
1,583,925	-				+0.6
1,583,929	-				+0.9
1,583,930	-				-0.1
1,583,930	-				-1.3
1,583,938	+				-0.6
1,583,964	-				-0.1
1,583,977	+				+0.5
1,584,027	-				-0.7
1,584,055	-				-0.2
1,584,064	+		GFF1551	0.11	-0.0
1,584,065	+		GFF1551	0.11	-0.2
1,584,072	-		GFF1551	0.12	+0.7
1,584,072	-		GFF1551	0.12	+0.0
1,584,077	+		GFF1551	0.13	-2.6
1,584,085	-		GFF1551	0.14	+0.5
1,584,087	+		GFF1551	0.14	+0.1
1,584,095	-		GFF1551	0.15	+2.1
1,584,105	+		GFF1551	0.17	-0.2
1,584,137	-		GFF1551	0.21	+0.8
1,584,153	-		GFF1551	0.24	-0.0
1,584,155	+		GFF1551	0.24	-1.3
1,584,155	+		GFF1551	0.24	-0.7
1,584,163	-		GFF1551	0.25	-1.0
1,584,186	+		GFF1551	0.28	+1.7
1,584,188	-		GFF1551	0.28	-0.2
1,584,192	+		GFF1551	0.29	+0.0
1,584,208	+		GFF1551	0.31	-0.6
1,584,240	-		GFF1551	0.36	-0.4
1,584,268	+		GFF1551	0.39	+0.5
1,584,269	+		GFF1551	0.40	-1.6
1,584,269	+		GFF1551	0.40	-0.3
1,584,269	+		GFF1551	0.40	+0.9
1,584,269	+		GFF1551	0.40	-0.2
1,584,276	-		GFF1551	0.41	-0.7
1,584,277	-		GFF1551	0.41	-1.7
1,584,277	-		GFF1551	0.41	+0.5
1,584,277	-		GFF1551	0.41	-0.7
1,584,277	-		GFF1551	0.41	-0.6
1,584,277	-		GFF1551	0.41	+0.8
1,584,277	-		GFF1551	0.41	-0.3
1,584,277	-		GFF1551	0.41	+0.3
1,584,283	+		GFF1551	0.41	+0.3
1,584,300	+		GFF1551	0.44	-1.2
1,584,300	+		GFF1551	0.44	-1.3
1,584,308	-		GFF1551	0.45	+1.4
1,584,313	-		GFF1551	0.46	-0.0
1,584,315	+		GFF1551	0.46	+0.0
1,584,315	+		GFF1551	0.46	-0.4
1,584,315	+		GFF1551	0.46	+0.8
1,584,323	-		GFF1551	0.47	-0.0
1,584,324	-		GFF1551	0.47	+0.0
1,584,324	-		GFF1551	0.47	-1.0
1,584,339	+		GFF1551	0.49	-0.5
1,584,360	+		GFF1551	0.52	-0.5
1,584,368	-		GFF1551	0.53	-0.6
1,584,368	-		GFF1551	0.53	+1.0
1,584,379	-		GFF1551	0.55	-0.2
1,584,380	+		GFF1551	0.55	-0.9
1,584,383	-		GFF1551	0.55	+1.6
1,584,383	-		GFF1551	0.55	-0.3
1,584,383	-		GFF1551	0.55	+1.1
1,584,384	+		GFF1551	0.55	-0.9
1,584,385	+		GFF1551	0.56	-0.1
1,584,386	+		GFF1551	0.56	+1.3
1,584,388	-		GFF1551	0.56	-0.6
1,584,389	-		GFF1551	0.56	-0.3
1,584,398	+		GFF1551	0.57	+0.3
1,584,398	+		GFF1551	0.57	+0.6
1,584,398	+		GFF1551	0.57	-0.4
1,584,431	-		GFF1551	0.62	+0.7
1,584,431	-		GFF1551	0.62	+0.0
1,584,431	-		GFF1551	0.62	-0.3
1,584,448	+		GFF1551	0.64	+0.1
1,584,448	+		GFF1551	0.64	-0.6
1,584,464	+		GFF1551	0.67	+1.1
1,584,472	-		GFF1551	0.68	+0.3
1,584,472	-		GFF1551	0.68	-0.2
1,584,472	-		GFF1551	0.68	+0.9
1,584,481	-		GFF1551	0.69	-1.2
1,584,481	-		GFF1551	0.69	-0.1
1,584,482	-		GFF1551	0.69	-0.3
1,584,529	+		GFF1551	0.76	-2.7
1,584,554	+		GFF1551	0.79	-1.2
1,584,562	-		GFF1551	0.80	+0.0
1,584,562	-		GFF1551	0.80	+0.9
1,584,562	-		GFF1551	0.80	-1.8
1,584,580	+		GFF1551	0.83	+0.3
1,584,580	-		GFF1551	0.83	-0.0
1,584,590	-		GFF1551	0.84	-1.7
1,584,599	+		GFF1551	0.85	-0.1
1,584,599	+		GFF1551	0.85	-1.3
1,584,606	-		GFF1551	0.86	-1.6
1,584,607	-		GFF1551	0.86	-0.5
1,584,670	+				-0.8
1,584,670	+				-0.7
1,584,670	+				-1.7
1,584,675	+				-0.1
1,584,678	-				-0.4
1,584,678	-				-1.3
1,584,678	-				-0.6
1,584,678	-				-2.8
1,584,678	-				+0.1
1,584,678	-				-1.0
1,584,678	-				-0.0
1,584,679	-				-1.2
1,584,682	+				-0.9
1,584,682	+				-0.6
1,584,682	+				-0.2
1,584,682	+				-0.2
1,584,682	+				-0.1
1,584,687	+				+0.7
1,584,687	+				-0.5
1,584,694	+				+1.2
1,584,694	+				+0.2
1,584,695	-				-0.5
1,584,695	-				+0.1
1,584,695	-				-0.5
1,584,700	+				-0.5
1,584,718	+				-0.4
1,584,718	+				+0.9
1,584,718	-				-1.9
1,584,718	-				-0.5
1,584,725	-				+0.1
1,584,763	+				-0.4
1,584,774	-				+0.4
1,584,782	-				+0.0
1,584,811	+				-0.6
1,584,812	-				+0.3
1,584,814	+				+0.4
1,584,822	-				-0.5
1,584,822	-				-1.1
1,584,824	+				-1.1
1,584,824	+				-0.2
1,584,824	+				-0.4
1,584,824	+				+0.1
1,584,824	+				-0.9
1,584,824	+				-1.0
1,584,832	-		GFF1552	0.11	-0.9
1,584,832	-		GFF1552	0.11	-0.2
1,584,832	-		GFF1552	0.11	+0.9
1,584,832	-		GFF1552	0.11	-0.2
1,584,857	+		GFF1552	0.13	+0.1
1,584,857	+		GFF1552	0.13	+0.4
1,584,857	+		GFF1552	0.13	+0.1
1,584,857	+		GFF1552	0.13	+0.3
1,584,857	+		GFF1552	0.13	-0.1
1,584,865	-		GFF1552	0.13	-0.1
1,584,865	-		GFF1552	0.13	+0.7
1,584,897	+		GFF1552	0.16	+0.2
1,584,903	+		GFF1552	0.16	+0.4
1,584,905	-		GFF1552	0.17	+0.3
1,584,905	-		GFF1552	0.17	-1.2
1,584,905	-		GFF1552	0.17	-0.5
1,584,911	-		GFF1552	0.17	-0.7
1,584,949	+		GFF1552	0.20	+0.4
1,584,949	+		GFF1552	0.20	+0.4
1,584,957	-		GFF1552	0.21	-0.7
1,584,962	-		GFF1552	0.21	-0.7
1,584,966	+		GFF1552	0.22	+0.4
1,584,977	+		GFF1552	0.23	-0.6
1,584,983	-		GFF1552	0.23	-0.3
1,584,983	-		GFF1552	0.23	+0.8
1,585,008	+		GFF1552	0.25	+0.2
1,585,038	+		GFF1552	0.28	-1.5
1,585,046	-		GFF1552	0.28	+0.6
1,585,061	+		GFF1552	0.30	-1.3
1,585,071	+		GFF1552	0.30	-2.0
1,585,077	+		GFF1552	0.31	-1.7
1,585,079	-		GFF1552	0.31	-0.1
1,585,089	+		GFF1552	0.32	+0.7
1,585,094	+		GFF1552	0.32	-0.2
1,585,094	+		GFF1552	0.32	-0.0
1,585,094	+		GFF1552	0.32	-0.0
1,585,094	+		GFF1552	0.32	-0.0
1,585,094	+		GFF1552	0.32	+0.6
1,585,094	+		GFF1552	0.32	-1.1
1,585,096	+		GFF1552	0.32	+0.4
1,585,097	-		GFF1552	0.33	-1.6
1,585,097	-		GFF1552	0.33	-0.4
1,585,097	-		GFF1552	0.33	-1.2
1,585,102	-		GFF1552	0.33	-0.4
1,585,102	-		GFF1552	0.33	-1.6
1,585,137	+		GFF1552	0.36	-0.2
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