Strain Fitness in Sphingobium sp. HT1-2 around GFF1493

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,517,878	+		GFF1492	0.48	-1.2
1,517,905	+		GFF1492	0.50	-0.7
1,517,912	+		GFF1492	0.50	-1.0
1,517,913	-		GFF1492	0.50	-0.8
1,517,926	-		GFF1492	0.51	-1.6
1,517,936	-		GFF1492	0.52	+2.2
1,517,936	-		GFF1492	0.52	+0.6
1,517,946	+		GFF1492	0.52	-0.3
1,517,962	-		GFF1492	0.53	-0.4
1,517,973	+		GFF1492	0.54	-1.4
1,518,002	-		GFF1492	0.55	-1.0
1,518,013	-		GFF1492	0.56	+0.2
1,518,033	+		GFF1492	0.57	+0.7
1,518,033	+		GFF1492	0.57	+0.3
1,518,041	-		GFF1492	0.58	-0.1
1,518,041	-		GFF1492	0.58	-0.6
1,518,050	+		GFF1492	0.58	-1.0
1,518,058	-		GFF1492	0.59	-1.3
1,518,063	+		GFF1492	0.59	+1.4
1,518,071	-		GFF1492	0.60	+0.8
1,518,071	-		GFF1492	0.60	-0.8
1,518,113	+		GFF1492	0.62	-0.5
1,518,113	+		GFF1492	0.62	-0.5
1,518,113	+		GFF1492	0.62	+0.4
1,518,113	+		GFF1492	0.62	-0.9
1,518,113	+		GFF1492	0.62	+0.6
1,518,113	+		GFF1492	0.62	-0.3
1,518,121	-		GFF1492	0.62	+0.3
1,518,121	-		GFF1492	0.62	-0.6
1,518,208	+		GFF1492	0.68	-1.9
1,518,216	+		GFF1492	0.68	+0.4
1,518,219	+		GFF1492	0.68	+0.1
1,518,223	-		GFF1492	0.69	-0.2
1,518,223	-		GFF1492	0.69	-0.4
1,518,240	-		GFF1492	0.70	-1.1
1,518,240	-		GFF1492	0.70	+1.5
1,518,251	+		GFF1492	0.70	-1.6
1,518,256	+		GFF1492	0.70	+0.5
1,518,280	-		GFF1492	0.72	-0.4
1,518,300	-		GFF1492	0.73	+0.9
1,518,328	-		GFF1492	0.75	-1.4
1,518,364	-		GFF1492	0.77	-0.5
1,518,366	+		GFF1492	0.77	-0.8
1,518,371	+		GFF1492	0.77	-0.5
1,518,371	+		GFF1492	0.77	-0.8
1,518,373	+		GFF1492	0.77	+0.2
1,518,373	+		GFF1492	0.77	+0.3
1,518,373	+		GFF1492	0.77	+0.3
1,518,374	-		GFF1492	0.77	-0.3
1,518,379	-		GFF1492	0.78	+0.9
1,518,381	-		GFF1492	0.78	-0.4
1,518,381	-		GFF1492	0.78	-0.6
1,518,381	-		GFF1492	0.78	-0.4
1,518,381	-		GFF1492	0.78	-0.3
1,518,389	+		GFF1492	0.78	-0.1
1,518,396	+		GFF1492	0.79	+0.2
1,518,401	+		GFF1492	0.79	+1.0
1,518,404	-		GFF1492	0.79	-0.3
1,518,409	+		GFF1492	0.80	-0.4
1,518,409	+		GFF1492	0.80	-1.6
1,518,409	-		GFF1492	0.80	+0.3
1,518,417	-		GFF1492	0.80	+1.2
1,518,417	-		GFF1492	0.80	-0.7
1,518,432	+		GFF1492	0.81	+0.1
1,518,440	-		GFF1492	0.81	-1.6
1,518,440	-		GFF1492	0.81	-0.5
1,518,453	+		GFF1492	0.82	+0.3
1,518,454	+		GFF1492	0.82	-2.5
1,518,454	+		GFF1492	0.82	-1.1
1,518,461	-		GFF1492	0.83	-0.4
1,518,461	-		GFF1492	0.83	+1.5
1,518,462	-		GFF1492	0.83	+1.1
1,518,505	+		GFF1492	0.85	+1.6
1,518,554	-		GFF1492	0.88	+0.7
1,518,567	+		GFF1492	0.89	-0.3
1,518,567	+		GFF1492	0.89	-0.6
1,518,575	-		GFF1492	0.89	+0.3
1,518,575	-		GFF1492	0.89	-1.3
1,518,575	-		GFF1492	0.89	+0.1
1,518,575	-		GFF1492	0.89	-1.7
1,518,575	-		GFF1492	0.89	+0.5
1,518,618	+				-0.8
1,518,618	+				-0.4
1,518,618	+				+1.4
1,518,688	+				-1.0
1,518,693	+				-0.4
1,518,696	+				-2.3
1,518,696	+				+0.2
1,518,704	-				+0.8
1,518,704	-				-0.7
1,518,733	+				-1.3
1,518,733	+				+0.2
1,518,733	+				-0.8
1,518,738	+				-0.3
1,518,741	-				+0.1
1,518,741	-				+0.6
1,518,746	+				-0.9
1,518,746	+				-0.4
1,518,746	+				-0.7
1,518,746	+				-0.4
1,518,746	+				+0.2
1,518,746	-				+0.0
1,518,754	-				-1.6
1,518,754	-				-1.3
1,518,754	-				-0.4
1,518,754	-				-3.1
1,518,765	+				-0.9
1,518,851	+				-1.6
1,518,851	+				+0.2
1,518,851	+				+0.2
1,518,851	+				-0.5
1,518,852	+				+0.9
1,518,859	-				+0.2
1,518,859	-				-1.5
1,518,859	-				-0.2
1,518,859	-				-2.3
1,518,896	-				-0.4
1,518,907	+				-0.8
1,518,915	-				+0.4
1,518,915	-				+0.1
1,518,915	-				-1.9
1,518,950	+				+0.1
1,518,953	+				-0.5
1,518,985	+				+0.3
1,518,989	-				+2.2
1,518,995	-				-0.4
1,519,038	+				+2.3
1,519,048	+		GFF1493	0.10	+0.5
1,519,049	+		GFF1493	0.10	-0.3
1,519,054	+		GFF1493	0.11	+0.9
1,519,054	+		GFF1493	0.11	+0.7
1,519,054	+		GFF1493	0.11	+0.9
1,519,054	+		GFF1493	0.11	+0.2
1,519,054	+		GFF1493	0.11	+0.8
1,519,057	-		GFF1493	0.11	+1.0
1,519,057	-		GFF1493	0.11	+0.1
1,519,062	-		GFF1493	0.11	-0.7
1,519,062	-		GFF1493	0.11	+0.7
1,519,062	-		GFF1493	0.11	+1.0
1,519,076	+		GFF1493	0.12	-0.1
1,519,098	+		GFF1493	0.13	+1.2
1,519,098	+		GFF1493	0.13	+0.8
1,519,098	+		GFF1493	0.13	-0.9
1,519,106	-		GFF1493	0.14	+0.6
1,519,106	-		GFF1493	0.14	+1.3
1,519,106	-		GFF1493	0.14	+0.2
1,519,119	-		GFF1493	0.14	+0.0
1,519,140	+		GFF1493	0.16	-0.3
1,519,176	+		GFF1493	0.18	+0.9
1,519,181	+		GFF1493	0.18	-0.0
1,519,189	-		GFF1493	0.18	+0.0
1,519,200	+		GFF1493	0.19	+2.4
1,519,225	+		GFF1493	0.21	+1.8
1,519,225	+		GFF1493	0.21	+0.3
1,519,238	-		GFF1493	0.21	+0.4
1,519,241	+		GFF1493	0.21	-1.6
1,519,247	-		GFF1493	0.22	-0.8
1,519,249	-		GFF1493	0.22	-0.5
1,519,249	-		GFF1493	0.22	+0.6
1,519,270	+		GFF1493	0.23	+1.7
1,519,270	+		GFF1493	0.23	+0.3
1,519,272	+		GFF1493	0.23	+0.4
1,519,304	-		GFF1493	0.25	-0.6
1,519,312	+		GFF1493	0.26	-0.5
1,519,312	+		GFF1493	0.26	+0.2
1,519,331	+		GFF1493	0.27	+0.5
1,519,349	-		GFF1493	0.28	+1.9
1,519,358	+		GFF1493	0.28	+1.0
1,519,371	+		GFF1493	0.29	-0.4
1,519,377	+		GFF1493	0.29	+0.7
1,519,385	-		GFF1493	0.30	-1.8
1,519,389	+		GFF1493	0.30	+0.3
1,519,395	+		GFF1493	0.30	+1.0
1,519,408	+		GFF1493	0.31	+0.7
1,519,409	-		GFF1493	0.31	+0.1
1,519,410	-		GFF1493	0.31	-1.4
1,519,410	-		GFF1493	0.31	+0.5
1,519,410	-		GFF1493	0.31	+0.3
1,519,410	-		GFF1493	0.31	+0.8
1,519,454	+		GFF1493	0.34	-0.6
1,519,508	+		GFF1493	0.37	+1.6
1,519,509	+		GFF1493	0.37	+0.3
1,519,550	-		GFF1493	0.39	+1.3
1,519,564	+		GFF1493	0.40	-0.1
1,519,564	+		GFF1493	0.40	-1.7
1,519,564	+		GFF1493	0.40	+0.9
1,519,564	+		GFF1493	0.40	+0.5
1,519,567	-		GFF1493	0.40	+0.6
1,519,572	-		GFF1493	0.40	+0.5
1,519,597	+		GFF1493	0.42	+0.3
1,519,597	+		GFF1493	0.42	+1.0
1,519,605	-		GFF1493	0.42	+0.9
1,519,605	-		GFF1493	0.42	+0.8
1,519,611	+		GFF1493	0.43	+1.1
1,519,617	-		GFF1493	0.43	+0.0
1,519,717	+		GFF1493	0.49	-1.9
1,519,721	+		GFF1493	0.49	+0.6
1,519,729	-		GFF1493	0.49	+1.7
1,519,729	-		GFF1493	0.49	+1.4
1,519,729	-		GFF1493	0.49	+1.4
1,519,729	-		GFF1493	0.49	+0.2
1,519,729	-		GFF1493	0.49	+0.7
1,519,742	+		GFF1493	0.50	+0.7
1,519,747	+		GFF1493	0.50	+0.3
1,519,747	+		GFF1493	0.50	+0.1
1,519,747	+		GFF1493	0.50	+0.1
1,519,747	+		GFF1493	0.50	+1.4
1,519,747	+		GFF1493	0.50	-0.9
1,519,747	+		GFF1493	0.50	-0.7
1,519,755	-		GFF1493	0.51	+1.0
1,519,755	-		GFF1493	0.51	-1.9
1,519,755	-		GFF1493	0.51	+0.7
1,519,755	-		GFF1493	0.51	+0.2
1,519,755	-		GFF1493	0.51	-0.0
1,519,755	-		GFF1493	0.51	+1.5
1,519,755	-		GFF1493	0.51	+0.1
1,519,755	-		GFF1493	0.51	+0.5
1,519,758	+		GFF1493	0.51	-0.1
1,519,776	+		GFF1493	0.52	-0.2
1,519,783	-		GFF1493	0.53	-0.1
1,519,870	+		GFF1493	0.58	-0.3
1,519,880	+		GFF1493	0.58	+0.5
1,519,886	+		GFF1493	0.58	-0.3
1,519,888	-		GFF1493	0.59	+0.2
1,519,894	-		GFF1493	0.59	+0.9
1,519,894	-		GFF1493	0.59	+0.7
1,519,936	-		GFF1493	0.61	-1.5
1,519,948	+		GFF1493	0.62	-1.3
1,519,948	+		GFF1493	0.62	+0.4
1,519,948	+		GFF1493	0.62	+0.3
1,519,948	+		GFF1493	0.62	+0.4
1,519,948	+		GFF1493	0.62	+0.9
1,519,948	+		GFF1493	0.62	+0.1
1,519,948	+		GFF1493	0.62	+2.1
1,519,948	+		GFF1493	0.62	+0.1
1,519,948	+		GFF1493	0.62	+0.1
1,519,948	+		GFF1493	0.62	+0.6
1,519,948	+		GFF1493	0.62	+1.0
1,519,948	+		GFF1493	0.62	-0.8
1,519,948	+		GFF1493	0.62	+0.4
1,519,948	+		GFF1493	0.62	+0.2
1,519,951	-		GFF1493	0.62	+1.3
1,519,951	-		GFF1493	0.62	-0.6
1,519,953	+		GFF1493	0.62	-0.0
1,519,953	+		GFF1493	0.62	+0.5
1,519,956	-		GFF1493	0.62	-0.1
1,519,956	-		GFF1493	0.62	-1.5
1,519,956	-		GFF1493	0.62	+1.3
1,519,956	-		GFF1493	0.62	+0.6
1,519,956	-		GFF1493	0.62	+0.8
1,519,956	-		GFF1493	0.62	-2.3
1,519,956	-		GFF1493	0.62	+0.7
1,519,956	-		GFF1493	0.62	+0.3
1,519,961	-		GFF1493	0.63	-0.8
1,519,961	-		GFF1493	0.63	+0.3
1,519,961	-		GFF1493	0.63	+0.9
1,519,961	-		GFF1493	0.63	+0.9
1,519,961	-		GFF1493	0.63	-1.7
1,519,961	-		GFF1493	0.63	+2.4
1,519,961	-		GFF1493	0.63	-1.6
1,519,961	-		GFF1493	0.63	-0.6
1,519,972	-		GFF1493	0.63	-0.1
1,520,004	-		GFF1493	0.65	-0.3
1,520,033	+		GFF1493	0.67	+0.8
1,520,038	+		GFF1493	0.67	+0.7
1,520,038	+		GFF1493	0.67	+0.7
1,520,046	-		GFF1493	0.68	-0.8
1,520,046	-		GFF1493	0.68	-1.9
1,520,046	-		GFF1493	0.68	-0.7
1,520,046	-		GFF1493	0.68	+0.7
1,520,066	-		GFF1493	0.69	+0.3
1,520,103	-		GFF1493	0.71	-0.7
1,520,114	-		GFF1493	0.72	+0.7
1,520,114	-		GFF1493	0.72	-1.4
1,520,143	+		GFF1493	0.73	-0.0
1,520,151	-		GFF1493	0.74	+1.5
1,520,151	-		GFF1493	0.74	+1.0
1,520,151	-		GFF1493	0.74	+1.8
1,520,168	-		GFF1493	0.75	+1.0
1,520,196	+		GFF1493	0.76	-0.3
1,520,196	+		GFF1493	0.76	+0.5
1,520,196	+		GFF1493	0.76	+0.5
1,520,204	+		GFF1493	0.77	+0.3
1,520,204	-		GFF1493	0.77	+0.8
1,520,204	-		GFF1493	0.77	+0.1
1,520,229	+		GFF1493	0.78	-0.7
1,520,245	+		GFF1493	0.79	-0.8
1,520,247	+		GFF1493	0.79	-0.1
1,520,247	+		GFF1493	0.79	+1.2
1,520,247	+		GFF1493	0.79	-1.1
1,520,253	-		GFF1493	0.80	+0.4
1,520,255	-		GFF1493	0.80	+0.6
1,520,255	-		GFF1493	0.80	-0.3
1,520,255	-		GFF1493	0.80	-0.0
1,520,255	-		GFF1493	0.80	+0.2
1,520,255	-		GFF1493	0.80	+1.9
1,520,265	-		GFF1493	0.80	+0.0
1,520,299	+		GFF1493	0.82	+0.5
1,520,299	+		GFF1493	0.82	+0.7
1,520,299	+		GFF1493	0.82	-1.6
1,520,307	-		GFF1493	0.83	-0.1
1,520,332	+		GFF1493	0.84	-0.5
1,520,376	+		GFF1493	0.87	+1.3
1,520,387	+		GFF1493	0.87	-0.5
1,520,395	+		GFF1493	0.88	+0.8
1,520,402	-		GFF1493	0.88	+1.5
1,520,403	-		GFF1493	0.88	+0.7
1,520,477	+				+1.3
1,520,485	-				-0.5
1,520,489	+				+0.3
1,520,490	+				+1.9
1,520,495	-				+0.3
1,520,497	-				+0.4
1,520,497	-				+0.7
1,520,506	-				-1.7
1,520,516	-				-0.1
1,520,543	+				+1.3
1,520,543	+				+0.4
1,520,543	+				-0.6
1,520,543	+				+1.6
1,520,543	+				+0.2
1,520,543	+				+0.4
1,520,543	+				+1.7
1,520,543	+				-0.4
1,520,543	+				-0.1
1,520,543	+				+0.9
1,520,543	+				-0.3
1,520,543	+				-0.5
1,520,543	-				+0.0
1,520,551	-				+0.5
1,520,551	-				+1.4
1,520,551	-				+0.3
1,520,592	+				-1.3
1,520,594	-				+0.1
1,520,594	-				+0.1
1,520,599	+				-1.5
1,520,605	+				+0.1
1,520,620	+				+0.0
1,520,701	+		GFF1494	0.12	-1.6
1,520,701	+		GFF1494	0.12	-0.9
1,520,716	+		GFF1494	0.14	-2.3
1,520,716	+		GFF1494	0.14	+0.5
1,520,724	-		GFF1494	0.15	+1.8
1,520,724	-		GFF1494	0.15	-0.3
1,520,724	-		GFF1494	0.15	-0.6
1,520,724	-		GFF1494	0.15	+0.1
1,520,762	-		GFF1494	0.20	+0.3
1,520,762	-		GFF1494	0.20	-0.9
1,520,774	+		GFF1494	0.22	+1.5
1,520,774	+		GFF1494	0.22	-0.5
1,520,774	+		GFF1494	0.22	-0.4
1,520,782	-		GFF1494	0.23	-1.3
1,520,782	-		GFF1494	0.23	-1.1
1,520,798	-		GFF1494	0.25	-1.4
1,520,829	-		GFF1494	0.29	+0.3
1,520,839	+		GFF1494	0.31	+0.7
1,520,839	+		GFF1494	0.31	-1.7
1,520,839	+		GFF1494	0.31	+1.1
1,520,839	+		GFF1494	0.31	-1.4
1,520,839	-		GFF1494	0.31	-0.7
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