Strain Fitness in Sphingobium sp. HT1-2 around GFF1465

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,493,017	-		GFF1464	0.70	-1.1
1,493,026	-		GFF1464	0.71	-2.4
1,493,039	-		GFF1464	0.71	+0.5
1,493,044	+		GFF1464	0.71	+0.4
1,493,052	-		GFF1464	0.72	-0.9
1,493,070	-		GFF1464	0.72	+0.2
1,493,094	-		GFF1464	0.73	-0.2
1,493,097	+		GFF1464	0.73	+0.1
1,493,102	+		GFF1464	0.73	+1.1
1,493,102	+		GFF1464	0.73	-0.5
1,493,105	-		GFF1464	0.74	-0.3
1,493,139	+		GFF1464	0.75	+0.8
1,493,147	-		GFF1464	0.75	+0.0
1,493,149	+		GFF1464	0.75	-0.5
1,493,154	+		GFF1464	0.75	-1.8
1,493,164	-		GFF1464	0.76	-0.6
1,493,166	+		GFF1464	0.76	-0.7
1,493,184	-		GFF1464	0.76	+0.7
1,493,193	+		GFF1464	0.77	+0.5
1,493,200	+		GFF1464	0.77	+1.7
1,493,200	+		GFF1464	0.77	-0.3
1,493,201	-		GFF1464	0.77	-0.4
1,493,208	-		GFF1464	0.77	-0.7
1,493,208	-		GFF1464	0.77	+0.4
1,493,220	-		GFF1464	0.78	+0.8
1,493,251	+		GFF1464	0.79	+0.2
1,493,265	+		GFF1464	0.79	+0.5
1,493,267	+		GFF1464	0.79	+0.4
1,493,278	+		GFF1464	0.80	+0.4
1,493,278	-		GFF1464	0.80	+0.3
1,493,285	+		GFF1464	0.80	+0.2
1,493,285	+		GFF1464	0.80	-0.0
1,493,288	-		GFF1464	0.80	-1.1
1,493,296	+		GFF1464	0.80	-1.3
1,493,296	+		GFF1464	0.80	-1.6
1,493,296	+		GFF1464	0.80	+0.5
1,493,296	+		GFF1464	0.80	-1.6
1,493,304	-		GFF1464	0.81	+1.3
1,493,310	+		GFF1464	0.81	-0.9
1,493,310	+		GFF1464	0.81	-0.3
1,493,315	+		GFF1464	0.81	+1.4
1,493,318	-		GFF1464	0.81	-0.0
1,493,323	-		GFF1464	0.81	-0.3
1,493,326	+		GFF1464	0.81	+0.0
1,493,334	-		GFF1464	0.82	-1.7
1,493,334	-		GFF1464	0.82	-0.8
1,493,341	+		GFF1464	0.82	-0.8
1,493,372	+		GFF1464	0.83	-0.5
1,493,373	+		GFF1464	0.83	-1.0
1,493,382	+		GFF1464	0.83	-2.1
1,493,420	-		GFF1464	0.85	-0.3
1,493,423	+		GFF1464	0.85	+0.5
1,493,426	-		GFF1464	0.85	-2.7
1,493,430	+		GFF1464	0.85	-0.5
1,493,431	-		GFF1464	0.85	+0.1
1,493,445	-		GFF1464	0.86	-1.4
1,493,445	-		GFF1464	0.86	-0.9
1,493,455	+		GFF1464	0.86	+0.8
1,493,525	-		GFF1464	0.88	+1.0
1,493,619	-				-0.0
1,493,621	-				+0.4
1,493,632	-				-1.4
1,493,640	+				-1.4
1,493,660	-				-0.2
1,493,663	+				-0.8
1,493,670	+				+0.6
1,493,670	+				-3.0
1,493,680	+				+0.1
1,493,680	+				-1.1
1,493,688	-				-0.8
1,493,700	+				+0.3
1,493,702	-				+0.2
1,493,731	+				-2.0
1,493,731	+				-0.1
1,493,731	+				-0.6
1,493,731	+				+0.9
1,493,739	-				-0.7
1,493,739	-				+0.3
1,493,739	-				-0.8
1,493,768	-				-1.3
1,493,774	+				+0.3
1,493,777	-				-0.4
1,493,782	+				-1.3
1,493,782	-				-1.1
1,493,782	-				-1.1
1,493,783	+				+1.2
1,493,793	+				-1.0
1,493,801	-				-0.3
1,493,812	-				-0.6
1,493,834	-				+0.3
1,493,876	+				-1.7
1,493,884	-				-0.4
1,493,884	-				-0.2
1,493,884	-				+0.6
1,493,884	-				-1.0
1,493,922	+				+0.2
1,493,949	-				-0.8
1,493,963	+				-0.2
1,494,003	+				+0.3
1,494,063	-				+1.0
1,494,094	-		GFF1465	0.14	+0.6
1,494,100	-		GFF1465	0.15	+0.3
1,494,113	-		GFF1465	0.16	+0.6
1,494,124	+		GFF1465	0.18	-1.1
1,494,131	-		GFF1465	0.19	-1.0
1,494,131	-		GFF1465	0.19	+0.9
1,494,131	-		GFF1465	0.19	+1.4
1,494,136	-		GFF1465	0.20	+1.0
1,494,147	-		GFF1465	0.21	-0.0
1,494,188	-		GFF1465	0.27	+0.5
1,494,189	+		GFF1465	0.28	-0.1
1,494,211	-		GFF1465	0.31	-0.9
1,494,212	+		GFF1465	0.31	+0.3
1,494,270	-		GFF1465	0.39	+0.3
1,494,277	+		GFF1465	0.40	-0.9
1,494,339	-		GFF1465	0.49	+0.3
1,494,339	-		GFF1465	0.49	-0.8
1,494,379	-		GFF1465	0.55	+1.4
1,494,379	-		GFF1465	0.55	+0.2
1,494,383	+		GFF1465	0.56	-1.6
1,494,409	-		GFF1465	0.60	+0.3
1,494,430	-		GFF1465	0.63	-0.9
1,494,430	-		GFF1465	0.63	-0.2
1,494,481	+		GFF1465	0.70	-0.8
1,494,491	+		GFF1465	0.71	-1.6
1,494,505	+		GFF1465	0.74	-1.4
1,494,510	-		GFF1465	0.74	+0.7
1,494,510	-		GFF1465	0.74	-0.3
1,494,693	+				-0.9
1,494,695	+				-0.2
1,494,695	+				+0.8
1,494,702	+				+0.1
1,494,703	-				-0.5
1,494,710	-				-1.0
1,494,733	+		GFF1466	0.10	-0.3
1,494,735	+		GFF1466	0.11	-1.6
1,494,759	+		GFF1466	0.16	+0.7
1,494,761	+		GFF1466	0.16	+1.3
1,494,769	-		GFF1466	0.18	-0.5
1,494,781	+		GFF1466	0.20	+0.1
1,494,786	-		GFF1466	0.21	+0.8
1,494,795	+		GFF1466	0.23	-0.2
1,494,795	+		GFF1466	0.23	+0.6
1,494,795	+		GFF1466	0.23	-0.7
1,494,795	+		GFF1466	0.23	-0.8
1,494,799	+		GFF1466	0.24	-1.0
1,494,819	+		GFF1466	0.28	-1.6
1,494,827	-		GFF1466	0.29	-1.0
1,494,829	+		GFF1466	0.30	+0.8
1,494,861	+		GFF1466	0.36	-0.7
1,494,861	+		GFF1466	0.36	-0.1
1,494,869	-		GFF1466	0.38	-1.7
1,494,869	-		GFF1466	0.38	+1.0
1,494,869	-		GFF1466	0.38	-0.1
1,494,869	-		GFF1466	0.38	+0.3
1,494,873	+		GFF1466	0.39	-1.4
1,494,873	+		GFF1466	0.39	-0.6
1,494,873	+		GFF1466	0.39	+0.7
1,494,873	+		GFF1466	0.39	-0.6
1,494,873	+		GFF1466	0.39	-1.4
1,494,873	+		GFF1466	0.39	+0.0
1,494,873	+		GFF1466	0.39	-1.0
1,494,873	+		GFF1466	0.39	-1.1
1,494,873	+		GFF1466	0.39	+1.1
1,494,879	-		GFF1466	0.40	-1.0
1,494,879	-		GFF1466	0.40	-0.6
1,494,880	-		GFF1466	0.40	-0.9
1,494,881	-		GFF1466	0.40	-1.6
1,494,881	-		GFF1466	0.40	+0.5
1,494,881	-		GFF1466	0.40	+0.3
1,494,881	-		GFF1466	0.40	-1.4
1,494,881	-		GFF1466	0.40	-1.6
1,494,881	-		GFF1466	0.40	+0.5
1,494,881	-		GFF1466	0.40	-1.1
1,494,881	-		GFF1466	0.40	-1.0
1,494,918	+		GFF1466	0.48	+0.2
1,494,926	-		GFF1466	0.50	-0.3
1,494,926	-		GFF1466	0.50	+0.5
1,494,949	-		GFF1466	0.54	-0.5
1,494,949	-		GFF1466	0.54	+0.3
1,494,959	-		GFF1466	0.56	+0.5
1,494,966	-		GFF1466	0.58	-0.2
1,494,968	+		GFF1466	0.58	+0.2
1,494,976	-		GFF1466	0.60	-1.2
1,495,030	+		GFF1466	0.71	+0.2
1,495,045	-		GFF1466	0.74	-0.5
1,495,047	-		GFF1466	0.74	-1.1
1,495,056	+		GFF1466	0.76	-1.6
1,495,056	+		GFF1466	0.76	-0.8
1,495,056	+		GFF1466	0.76	-0.1
1,495,064	-		GFF1466	0.78	-0.3
1,495,064	-		GFF1466	0.78	+0.4
1,495,071	+		GFF1466	0.79	-0.6
1,495,076	+		GFF1466	0.80	-0.9
1,495,079	-		GFF1466	0.81	-1.4
1,495,083	-		GFF1466	0.82	-1.7
1,495,089	-		GFF1466	0.83	-0.2
1,495,125	-				-0.8
1,495,136	+				-2.0
1,495,136	+				-1.3
1,495,144	-				+0.1
1,495,153	-				-1.3
1,495,183	-				-0.9
1,495,185	-				+0.6
1,495,241	-				-0.9
1,495,251	-				+0.3
1,495,255	+				+0.5
1,495,261	+				-0.0
1,495,261	+				+1.1
1,495,263	-				+0.6
1,495,284	+				-0.6
1,495,287	+				+0.1
1,495,292	-				+1.4
1,495,294	+				+1.1
1,495,297	-				-0.1
1,495,302	-				-0.8
1,495,340	+				-0.2
1,495,340	+				-0.4
1,495,346	-				+0.2
1,495,348	-				+0.6
1,495,368	+				+0.2
1,495,438	-				-0.3
1,495,457	-				+1.3
1,495,462	+				-0.3
1,495,469	+				+0.5
1,495,486	+				-0.1
1,495,489	+				+0.3
1,495,491	+				-0.3
1,495,491	+				+0.6
1,495,491	+				+0.6
1,495,496	+				-0.1
1,495,496	+				+1.2
1,495,498	+				+1.0
1,495,498	+				-2.2
1,495,499	-				-0.4
1,495,499	-				+0.6
1,495,499	-				-3.2
1,495,504	-				-2.6
1,495,504	-				+0.1
1,495,504	-				+0.6
1,495,504	-				+1.2
1,495,506	-				+1.2
1,495,506	-				-0.1
1,495,511	-				+0.8
1,495,556	+		GFF1467	0.11	+1.3
1,495,561	+		GFF1467	0.11	-1.7
1,495,564	-		GFF1467	0.12	-1.5
1,495,564	-		GFF1467	0.12	-1.5
1,495,569	-		GFF1467	0.12	+1.0
1,495,570	+		GFF1467	0.12	+0.9
1,495,572	+		GFF1467	0.12	+0.2
1,495,572	+		GFF1467	0.12	+0.3
1,495,574	-		GFF1467	0.12	-0.1
1,495,578	-		GFF1467	0.13	-0.3
1,495,578	-		GFF1467	0.13	+0.4
1,495,580	-		GFF1467	0.13	-0.5
1,495,580	-		GFF1467	0.13	+0.9
1,495,585	-		GFF1467	0.13	-1.4
1,495,603	+		GFF1467	0.15	+0.6
1,495,607	-		GFF1467	0.15	-0.3
1,495,616	+		GFF1467	0.16	+0.6
1,495,619	-		GFF1467	0.16	-0.4
1,495,626	+		GFF1467	0.16	+0.8
1,495,629	-		GFF1467	0.17	-1.6
1,495,629	-		GFF1467	0.17	-0.3
1,495,629	-		GFF1467	0.17	-0.9
1,495,630	+		GFF1467	0.17	-1.0
1,495,633	-		GFF1467	0.17	+0.8
1,495,634	-		GFF1467	0.17	-0.2
1,495,644	-		GFF1467	0.18	-0.2
1,495,663	+		GFF1467	0.19	+0.5
1,495,663	+		GFF1467	0.19	-0.3
1,495,682	+		GFF1467	0.21	-0.4
1,495,682	+		GFF1467	0.21	+0.9
1,495,682	+		GFF1467	0.21	-0.3
1,495,682	+		GFF1467	0.21	-1.3