Strain Fitness in Sphingobium sp. HT1-2 around GFF1423

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,450,692	+		GFF1421	0.39	-2.0
1,450,692	+		GFF1421	0.39	-0.7
1,450,695	-		GFF1421	0.40	-1.4
1,450,695	-		GFF1421	0.40	-0.5
1,450,699	-		GFF1421	0.41	-1.3
1,450,700	-		GFF1421	0.41	-0.8
1,450,720	-		GFF1421	0.46	+0.7
1,450,770	+		GFF1421	0.58	-0.5
1,450,794	+		GFF1421	0.64	-0.6
1,450,818	+		GFF1421	0.69	-0.2
1,450,826	-		GFF1421	0.71	-1.5
1,450,834	+		GFF1421	0.73	+0.1
1,450,834	+		GFF1421	0.73	+0.7
1,450,834	+		GFF1421	0.73	-0.2
1,450,840	+		GFF1421	0.75	-1.5
1,450,842	-		GFF1421	0.75	-0.6
1,450,842	-		GFF1421	0.75	-0.2
1,450,862	-		GFF1421	0.80	-0.3
1,450,862	-		GFF1421	0.80	-0.3
1,450,862	-		GFF1421	0.80	-0.1
1,450,862	-		GFF1421	0.80	-0.8
1,450,879	+		GFF1421	0.84	-0.5
1,450,879	+		GFF1421	0.84	-0.6
1,450,887	-		GFF1421	0.86	-2.4
1,450,897	+		GFF1421	0.88	-0.1
1,450,920	+				-0.4
1,450,920	+				+0.1
1,450,927	-				+0.0
1,450,933	+				-1.2
1,450,941	-				+0.3
1,450,941	-				-2.0
1,450,946	-				-1.7
1,450,969	+				-1.7
1,450,989	+				+1.9
1,450,989	+				-0.4
1,450,989	+				-1.8
1,450,991	+				+0.1
1,450,997	-				+0.7
1,450,997	-				+0.5
1,450,999	-				-0.8
1,451,008	+				-0.2
1,451,033	+		GFF1422	0.13	+0.3
1,451,033	+		GFF1422	0.13	-1.2
1,451,052	+		GFF1422	0.17	-0.0
1,451,079	-		GFF1422	0.21	-1.0
1,451,083	+		GFF1422	0.22	+0.2
1,451,096	+		GFF1422	0.25	-0.9
1,451,096	+		GFF1422	0.25	-0.7
1,451,116	-		GFF1422	0.28	+0.1
1,451,116	-		GFF1422	0.28	-1.4
1,451,131	-		GFF1422	0.31	-1.6
1,451,136	-		GFF1422	0.32	-0.3
1,451,136	-		GFF1422	0.32	-0.9
1,451,153	-		GFF1422	0.35	+0.5
1,451,153	-		GFF1422	0.35	-1.4
1,451,160	+		GFF1422	0.36	-2.6
1,451,168	-		GFF1422	0.37	-1.3
1,451,173	-		GFF1422	0.38	+0.7
1,451,198	+		GFF1422	0.43	-0.2
1,451,205	-		GFF1422	0.44	+0.8
1,451,208	+		GFF1422	0.45	+0.0
1,451,218	-		GFF1422	0.46	-1.7
1,451,254	+		GFF1422	0.53	+0.0
1,451,254	+		GFF1422	0.53	+0.6
1,451,274	+		GFF1422	0.57	-1.4
1,451,282	-		GFF1422	0.58	-0.1
1,451,282	-		GFF1422	0.58	-0.8
1,451,282	-		GFF1422	0.58	+0.4
1,451,292	-		GFF1422	0.60	+0.9
1,451,300	-		GFF1422	0.61	+1.1
1,451,318	+		GFF1422	0.65	-0.1
1,451,318	+		GFF1422	0.65	-1.4
1,451,326	-		GFF1422	0.66	+0.5
1,451,326	-		GFF1422	0.66	-0.2
1,451,326	-		GFF1422	0.66	-0.4
1,451,327	+		GFF1422	0.66	-0.8
1,451,358	+		GFF1422	0.72	-0.5
1,451,375	+		GFF1422	0.75	-0.3
1,451,377	+		GFF1422	0.75	+0.3
1,451,377	+		GFF1422	0.75	-1.4
1,451,385	-		GFF1422	0.77	-2.2
1,451,385	-		GFF1422	0.77	-0.4
1,451,404	+		GFF1422	0.80	-0.3
1,451,409	+		GFF1422	0.81	-1.4
1,451,422	+		GFF1422	0.83	-0.5
1,451,424	+		GFF1422	0.84	-0.6
1,451,432	-		GFF1422	0.85	+0.1
1,451,432	-		GFF1422	0.85	+0.8
1,451,433	-		GFF1422	0.85	-0.1
1,451,436	+		GFF1422	0.86	-0.2
1,451,437	+		GFF1422	0.86	+0.3
1,451,444	-		GFF1422	0.87	-0.5
1,451,446	+		GFF1422	0.88	+0.1
1,451,454	-		GFF1422	0.89	-1.7
1,451,454	-		GFF1422	0.89	-1.4
1,451,458	+		GFF1422	0.90	-0.9
1,451,461	-				-1.0
1,451,465	+				-0.1
1,451,465	+				+0.1
1,451,468	+				-0.2
1,451,489	+				+0.3
1,451,489	+				+0.3
1,451,497	-				+0.4
1,451,497	-				-0.8
1,451,506	+				+0.1
1,451,534	+				+0.0
1,451,534	+				-0.2
1,451,542	-				-2.4
1,451,542	-				+0.5
1,451,542	-				-1.5
1,451,577	+				+0.9
1,451,579	+				-0.3
1,451,610	+				-1.4
1,451,615	+				+0.7
1,451,620	-				-0.3
1,451,627	+				+0.1
1,451,629	-				-0.6
1,451,635	-				-0.6
1,451,638	+				-1.3
1,451,653	-				+0.8
1,451,655	+				+1.1
1,451,667	-				-1.0
1,451,675	-				+0.3
1,451,687	+				+0.0
1,451,687	+				-0.7
1,451,695	-				+1.2
1,451,695	-				+1.3
1,451,695	-				-0.0
1,451,695	-				-1.0
1,451,695	-				+1.9
1,451,700	-				-1.7
1,451,711	-				-0.0
1,451,716	-				+0.3
1,451,716	-				-0.8
1,451,717	+				-1.0
1,451,719	-				+0.3
1,451,738	+				+1.1
1,451,763	-				-1.7
1,451,773	-				+1.0
1,451,790	+		GFF1423	0.12	-0.4
1,451,790	+		GFF1423	0.12	-0.1
1,451,790	+		GFF1423	0.12	-2.1
1,451,790	+		GFF1423	0.12	-0.7
1,451,798	-		GFF1423	0.12	+0.7
1,451,798	-		GFF1423	0.12	+0.0
1,451,798	-		GFF1423	0.12	-0.2
1,451,800	+		GFF1423	0.13	-0.2
1,451,800	+		GFF1423	0.13	-1.4
1,451,800	+		GFF1423	0.13	-0.1
1,451,803	-		GFF1423	0.13	+0.0
1,451,803	-		GFF1423	0.13	-1.7
1,451,803	-		GFF1423	0.13	+0.6
1,451,808	-		GFF1423	0.14	-0.3
1,451,808	-		GFF1423	0.14	-0.9
1,451,813	-		GFF1423	0.14	-0.5
1,451,819	+		GFF1423	0.15	-2.2
1,451,819	+		GFF1423	0.15	-0.2
1,451,819	+		GFF1423	0.15	-1.7
1,451,819	+		GFF1423	0.15	+1.1
1,451,827	-		GFF1423	0.16	-0.4
1,451,827	-		GFF1423	0.16	+0.3
1,451,827	-		GFF1423	0.16	+0.7
1,451,827	-		GFF1423	0.16	-0.1
1,451,827	-		GFF1423	0.16	-1.1
1,451,827	-		GFF1423	0.16	+0.2
1,451,846	+		GFF1423	0.18	-1.0
1,451,851	+		GFF1423	0.18	+0.6
1,451,851	+		GFF1423	0.18	-0.3
1,451,854	-		GFF1423	0.19	+0.3
1,451,859	-		GFF1423	0.19	+0.1
1,451,873	-		GFF1423	0.21	+0.0
1,451,878	-		GFF1423	0.22	-1.1
1,451,916	-		GFF1423	0.26	-0.2
1,451,920	-		GFF1423	0.26	-0.1
1,451,922	+		GFF1423	0.27	-1.2
1,451,925	-		GFF1423	0.27	-0.2
1,451,930	-		GFF1423	0.28	-0.9
1,451,942	+		GFF1423	0.29	-1.8
1,451,942	+		GFF1423	0.29	-0.9
1,451,947	+		GFF1423	0.29	-0.4
1,451,952	+		GFF1423	0.30	-1.4
1,451,967	+		GFF1423	0.32	-1.6
1,451,967	+		GFF1423	0.32	-0.8
1,451,970	-		GFF1423	0.32	-0.1
1,451,975	-		GFF1423	0.33	-1.8
1,451,975	-		GFF1423	0.33	-1.3
1,452,017	+		GFF1423	0.37	-2.8
1,452,018	-		GFF1423	0.38	+0.4
1,452,021	+		GFF1423	0.38	-1.6
1,452,024	-		GFF1423	0.38	+0.7
1,452,036	+		GFF1423	0.40	-0.8
1,452,038	+		GFF1423	0.40	-0.4
1,452,038	+		GFF1423	0.40	-0.7
1,452,038	+		GFF1423	0.40	-0.3
1,452,041	-		GFF1423	0.40	+0.6
1,452,046	-		GFF1423	0.41	+0.0
1,452,046	-		GFF1423	0.41	+1.3
1,452,056	+		GFF1423	0.42	-0.8
1,452,066	+		GFF1423	0.43	-0.2
1,452,076	+		GFF1423	0.44	-0.7
1,452,084	-		GFF1423	0.45	+0.4
1,452,090	-		GFF1423	0.46	+0.1
1,452,092	-		GFF1423	0.46	+0.0
1,452,094	-		GFF1423	0.46	+0.6
1,452,098	+		GFF1423	0.47	+0.6
1,452,106	-		GFF1423	0.48	-0.9
1,452,111	-		GFF1423	0.48	-0.2
1,452,141	+		GFF1423	0.52	-2.2
1,452,141	+		GFF1423	0.52	-0.9
1,452,154	+		GFF1423	0.53	+0.8
1,452,179	-		GFF1423	0.56	-1.3
1,452,185	+		GFF1423	0.57	-0.4
1,452,185	+		GFF1423	0.57	+0.0
1,452,193	-		GFF1423	0.58	-1.7
1,452,199	+		GFF1423	0.58	-0.6
1,452,200	+		GFF1423	0.58	+0.1
1,452,200	+		GFF1423	0.58	-0.6
1,452,203	-		GFF1423	0.59	-0.9
1,452,210	-		GFF1423	0.59	+0.4
1,452,232	-		GFF1423	0.62	-1.5
1,452,252	+		GFF1423	0.64	-0.7
1,452,259	-		GFF1423	0.65	-0.4
1,452,260	-		GFF1423	0.65	+0.2
1,452,266	-		GFF1423	0.66	-0.4
1,452,274	-		GFF1423	0.67	+0.7
1,452,274	-		GFF1423	0.67	+0.4
1,452,277	+		GFF1423	0.67	-0.8
1,452,277	+		GFF1423	0.67	+1.1
1,452,286	+		GFF1423	0.68	+1.6
1,452,291	+		GFF1423	0.69	-0.8
1,452,299	-		GFF1423	0.70	-1.5
1,452,299	-		GFF1423	0.70	+1.0
1,452,299	-		GFF1423	0.70	-0.7
1,452,309	-		GFF1423	0.71	+1.1
1,452,312	+		GFF1423	0.71	-0.0
1,452,323	+		GFF1423	0.72	-1.6
1,452,323	+		GFF1423	0.72	-1.4
1,452,325	+		GFF1423	0.73	+0.3
1,452,325	+		GFF1423	0.73	+1.5
1,452,325	+		GFF1423	0.73	-0.9
1,452,331	-		GFF1423	0.73	+0.1
1,452,369	-		GFF1423	0.78	+0.8
1,452,369	-		GFF1423	0.78	+0.1
1,452,374	-		GFF1423	0.78	-1.9
1,452,382	+		GFF1423	0.79	+0.4
1,452,390	-		GFF1423	0.80	-1.7
1,452,396	+		GFF1423	0.81	-0.2
1,452,404	-		GFF1423	0.82	-1.3
1,452,439	+		GFF1423	0.86	-1.8
1,452,439	-		GFF1423	0.86	-1.7
1,452,474	-		GFF1423	0.90	-0.4
1,452,486	+				-0.6
1,452,489	-				+0.0
1,452,490	-				+0.4
1,452,490	-				-1.6
1,452,501	-				-0.3
1,452,527	-				+0.3
1,452,527	-				+0.7
1,452,629	+				-2.6
1,452,629	+				+0.9
1,452,629	+				+0.9
1,452,630	+				+0.8
1,452,637	-				-0.3
1,452,638	-				+0.2
1,452,643	+				-0.8
1,452,812	-				-3.5
1,452,814	+				-1.7
1,452,825	+				-2.8
1,452,833	+				-2.0
1,452,833	-				-2.1
1,452,833	-				-1.3
1,452,842	+				-2.3
1,452,856	+				-3.9
1,452,906	-		GFF1424	0.12	-0.9
1,452,906	-		GFF1424	0.12	-2.1
1,452,906	-		GFF1424	0.12	-2.6
1,452,929	+		GFF1424	0.13	+0.0
1,452,935	+		GFF1424	0.14	-2.1
1,452,940	+		GFF1424	0.14	-1.8
1,452,943	-		GFF1424	0.14	-1.6
1,452,949	+		GFF1424	0.15	-0.4
1,452,966	+		GFF1424	0.15	-1.4
1,452,966	+		GFF1424	0.15	-2.2
1,452,969	-		GFF1424	0.16	-1.3
1,452,974	-		GFF1424	0.16	-1.9
1,453,027	+		GFF1424	0.19	-1.8
1,453,027	+		GFF1424	0.19	-2.5
1,453,033	-		GFF1424	0.19	-2.8
1,453,123	-		GFF1424	0.24	-2.6
1,453,135	+		GFF1424	0.25	-2.0
1,453,161	+		GFF1424	0.26	-1.8
1,453,179	-		GFF1424	0.27	+0.0
1,453,191	-		GFF1424	0.28	-2.8
1,453,201	+		GFF1424	0.28	-2.6
1,453,239	-		GFF1424	0.30	-1.6
1,453,243	-		GFF1424	0.30	+0.0
1,453,252	-		GFF1424	0.31	-2.4
1,453,253	+		GFF1424	0.31	-1.7
1,453,258	-		GFF1424	0.31	-2.4
1,453,258	-		GFF1424	0.31	-2.7
1,453,263	+		GFF1424	0.31	-2.4
1,453,268	+		GFF1424	0.32	-2.6
1,453,273	+		GFF1424	0.32	-2.5
1,453,276	-		GFF1424	0.32	-0.6
1,453,276	-		GFF1424	0.32	-2.6
1,453,276	-		GFF1424	0.32	-1.3
1,453,324	+		GFF1424	0.35	-1.7
1,453,343	-		GFF1424	0.36	-3.7
1,453,349	+		GFF1424	0.36	-1.8
1,453,350	+		GFF1424	0.36	-1.4
1,453,380	-		GFF1424	0.38	-2.4
1,453,388	-		GFF1424	0.38	-1.8
1,453,416	+		GFF1424	0.40	-4.1
1,453,416	+		GFF1424	0.40	-0.7
1,453,416	+		GFF1424	0.40	-0.6
1,453,416	+		GFF1424	0.40	-2.4
1,453,421	+		GFF1424	0.40	-1.7
1,453,424	-		GFF1424	0.40	-1.9
1,453,424	-		GFF1424	0.40	-2.8
1,453,434	+		GFF1424	0.41	-1.9
1,453,434	+		GFF1424	0.41	-2.0
1,453,439	+		GFF1424	0.41	-1.1
1,453,442	-		GFF1424	0.41	-1.7
1,453,442	-		GFF1424	0.41	-2.4
1,453,442	-		GFF1424	0.41	-1.8
1,453,442	-		GFF1424	0.41	-2.6
1,453,442	-		GFF1424	0.41	-2.4
1,453,442	-		GFF1424	0.41	-1.9
1,453,445	-		GFF1424	0.41	-2.4
1,453,455	-		GFF1424	0.42	-0.3
1,453,477	-		GFF1424	0.43	-2.6
1,453,487	+		GFF1424	0.44	-2.6
1,453,487	+		GFF1424	0.44	-2.7
1,453,488	+		GFF1424	0.44	-2.6
1,453,495	-		GFF1424	0.44	-1.1
1,453,495	-		GFF1424	0.44	-1.9
1,453,495	-		GFF1424	0.44	-3.2
1,453,495	-		GFF1424	0.44	-2.2
1,453,495	-		GFF1424	0.44	-3.3
1,453,513	+		GFF1424	0.45	-2.7
1,453,513	+		GFF1424	0.45	-2.9
1,453,518	+		GFF1424	0.45	-1.1
1,453,518	+		GFF1424	0.45	-3.2
1,453,518	+		GFF1424	0.45	-1.4
1,453,521	-		GFF1424	0.45	-2.1
1,453,523	+		GFF1424	0.45	-1.9
1,453,523	+		GFF1424	0.45	-2.8
1,453,523	+		GFF1424	0.45	-3.4
1,453,523	+		GFF1424	0.45	-2.2
1,453,523	+		GFF1424	0.45	-2.9
1,453,526	-		GFF1424	0.46	-0.9
1,453,531	-		GFF1424	0.46	-1.4
1,453,531	-		GFF1424	0.46	-1.9
1,453,531	-		GFF1424	0.46	-2.7
1,453,531	-		GFF1424	0.46	-3.4
1,453,531	-		GFF1424	0.46	-1.9
1,453,531	-		GFF1424	0.46	-2.4
1,453,531	-		GFF1424	0.46	-2.1
1,453,542	+		GFF1424	0.46	-0.7
1,453,547	+		GFF1424	0.47	-4.6
1,453,555	-		GFF1424	0.47	-2.4