Strain Fitness in Sphingobium sp. HT1-2 around GFF1377

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,399,342	+		GFF1375	0.60	+0.1
1,399,342	+		GFF1375	0.60	-2.1
1,399,344	+		GFF1375	0.60	-0.2
1,399,364	+		GFF1375	0.62	-2.1
1,399,365	-		GFF1375	0.63	-1.7
1,399,365	-		GFF1375	0.63	-0.2
1,399,372	-		GFF1375	0.63	-0.5
1,399,375	+		GFF1375	0.64	-0.2
1,399,393	+		GFF1375	0.66	-0.1
1,399,420	+		GFF1375	0.69	+0.6
1,399,438	-		GFF1375	0.71	-0.1
1,399,473	+		GFF1375	0.75	-2.1
1,399,473	+		GFF1375	0.75	-2.5
1,399,481	+		GFF1375	0.75	+1.3
1,399,481	+		GFF1375	0.75	+0.8
1,399,481	-		GFF1375	0.75	+0.6
1,399,489	-		GFF1375	0.76	+0.9
1,399,489	-		GFF1375	0.76	-1.2
1,399,500	+		GFF1375	0.78	+1.2
1,399,508	-		GFF1375	0.78	-1.7
1,399,508	-		GFF1375	0.78	-2.5
1,399,541	-		GFF1375	0.82	-0.2
1,399,589	+		GFF1375	0.88	-1.1
1,399,597	-		GFF1375	0.88	+0.4
1,399,624	-				+0.0
1,399,641	+				+0.4
1,399,641	+				-2.1
1,399,641	+				+0.4
1,399,641	+				+0.1
1,399,641	+				-0.9
1,399,641	+				-1.4
1,399,649	-				-0.4
1,399,649	-				+1.7
1,399,649	-				-2.0
1,399,649	-				-0.4
1,399,659	-				+0.2
1,399,660	+				+0.5
1,399,792	-				-1.3
1,399,799	+				+0.6
1,399,799	+				-0.6
1,399,799	+				+1.0
1,399,799	+				-0.3
1,399,799	+				-0.2
1,399,799	+				-0.6
1,399,799	+				-0.3
1,399,799	+				-1.4
1,399,799	+				-0.1
1,399,807	-				+0.1
1,399,807	-				+0.7
1,399,807	-				+0.5
1,399,807	-				-0.7
1,399,807	-				-1.3
1,399,807	-				-1.3
1,399,807	-				-1.2
1,399,818	+				-0.1
1,399,866	+		GFF1376	0.14	-0.5
1,399,869	-		GFF1376	0.14	-0.2
1,399,871	+		GFF1376	0.15	+0.1
1,399,884	-		GFF1376	0.18	-0.7
1,399,884	-		GFF1376	0.18	-0.4
1,399,895	+		GFF1376	0.21	+0.3
1,399,900	+		GFF1376	0.23	+0.8
1,399,900	+		GFF1376	0.23	+1.2
1,399,903	-		GFF1376	0.23	-1.3
1,399,908	-		GFF1376	0.25	+1.4
1,399,908	-		GFF1376	0.25	+0.9
1,399,936	-		GFF1376	0.32	+1.5
1,399,938	+		GFF1376	0.33	-0.3
1,399,944	+		GFF1376	0.34	-0.6
1,399,950	-		GFF1376	0.36	-0.4
1,399,960	+		GFF1376	0.38	-0.2
1,399,975	+		GFF1376	0.42	+1.0
1,400,004	-		GFF1376	0.50	-0.4
1,400,004	-		GFF1376	0.50	+1.0
1,400,004	-		GFF1376	0.50	+0.9
1,400,014	-		GFF1376	0.52	-1.4
1,400,050	-		GFF1376	0.62	-0.4
1,400,055	-		GFF1376	0.63	+0.5
1,400,084	+		GFF1376	0.71	+0.0
1,400,089	+		GFF1376	0.72	+0.2
1,400,097	-		GFF1376	0.74	+0.0
1,400,102	+		GFF1376	0.76	-0.8
1,400,103	+		GFF1376	0.76	+0.2
1,400,112	+		GFF1376	0.78	+1.6
1,400,114	+		GFF1376	0.79	-0.4
1,400,120	-		GFF1376	0.80	-1.4
1,400,122	-		GFF1376	0.81	-0.4
1,400,124	+		GFF1376	0.81	-1.9
1,400,134	+		GFF1376	0.84	-0.4
1,400,134	+		GFF1376	0.84	-1.2
1,400,142	-		GFF1376	0.86	+1.4
1,400,142	-		GFF1376	0.86	-0.4
1,400,142	-		GFF1376	0.86	+0.2
1,400,167	-				-2.2
1,400,255	+				-0.6
1,400,278	+				-0.1
1,400,286	-				+0.6
1,400,297	+				-0.5
1,400,305	+				-1.4
1,400,318	+				+1.2
1,400,318	+				-1.5
1,400,326	-				+1.1
1,400,359	+				-0.1
1,400,359	+				-0.2
1,400,359	+				-0.4
1,400,359	+				-0.6
1,400,366	+				-2.0
1,400,366	-				-1.3
1,400,367	-				-0.9
1,400,367	-				+0.3
1,400,374	-				-1.2
1,400,374	-				-1.0
1,400,389	+				-1.5
1,400,400	+				-0.5
1,400,405	+				+0.8
1,400,408	-				-1.2
1,400,413	-				-0.4
1,400,422	+				-0.6
1,400,422	+				-0.2
1,400,430	-				-0.6
1,400,435	-				-0.3
1,400,476	+		GFF1377	0.11	-0.8
1,400,486	-		GFF1377	0.12	-1.5
1,400,491	+		GFF1377	0.12	-0.7
1,400,491	-		GFF1377	0.12	-2.1
1,400,492	+		GFF1377	0.12	-1.0
1,400,540	+		GFF1377	0.16	+0.3
1,400,540	+		GFF1377	0.16	-1.9
1,400,548	-		GFF1377	0.17	-1.2
1,400,574	+		GFF1377	0.19	-1.6
1,400,578	-		GFF1377	0.19	-0.2
1,400,598	+		GFF1377	0.21	+0.4
1,400,598	+		GFF1377	0.21	+0.7
1,400,598	+		GFF1377	0.21	-0.5
1,400,606	-		GFF1377	0.22	+0.6
1,400,606	-		GFF1377	0.22	-0.8
1,400,606	-		GFF1377	0.22	-1.9
1,400,616	-		GFF1377	0.22	-0.4
1,400,616	-		GFF1377	0.22	+1.9
1,400,616	-		GFF1377	0.22	-1.0
1,400,624	+		GFF1377	0.23	-0.4
1,400,656	+		GFF1377	0.26	-1.8
1,400,657	+		GFF1377	0.26	+0.4
1,400,664	-		GFF1377	0.26	+1.3
1,400,678	+		GFF1377	0.27	-0.5
1,400,684	+		GFF1377	0.28	-0.2
1,400,684	+		GFF1377	0.28	-0.2
1,400,684	+		GFF1377	0.28	+0.2
1,400,688	+		GFF1377	0.28	-0.8
1,400,688	+		GFF1377	0.28	-0.3
1,400,692	-		GFF1377	0.28	-0.6
1,400,694	+		GFF1377	0.29	-2.4
1,400,694	+		GFF1377	0.29	-0.4
1,400,694	+		GFF1377	0.29	-0.3
1,400,694	+		GFF1377	0.29	+1.6
1,400,702	-		GFF1377	0.29	-0.7
1,400,702	-		GFF1377	0.29	-0.5
1,400,709	+		GFF1377	0.30	+0.7
1,400,709	+		GFF1377	0.30	+0.9
1,400,716	-		GFF1377	0.30	-0.8
1,400,717	-		GFF1377	0.30	-1.4
1,400,717	-		GFF1377	0.30	-0.9
1,400,722	-		GFF1377	0.31	+0.9
1,400,739	+		GFF1377	0.32	-2.1
1,400,747	-		GFF1377	0.33	+0.6
1,400,747	-		GFF1377	0.33	-0.5
1,400,747	-		GFF1377	0.33	-0.3
1,400,747	-		GFF1377	0.33	+0.1
1,400,747	-		GFF1377	0.33	-2.7
1,400,757	-		GFF1377	0.34	-0.9
1,400,757	-		GFF1377	0.34	-0.4
1,400,763	-		GFF1377	0.34	+0.4
1,400,789	+		GFF1377	0.36	+0.1
1,400,795	+		GFF1377	0.37	-0.8
1,400,795	+		GFF1377	0.37	+1.1
1,400,796	+		GFF1377	0.37	-0.3
1,400,836	-		GFF1377	0.40	-1.1
1,400,862	+		GFF1377	0.42	-0.3
1,400,865	-		GFF1377	0.42	-1.1
1,400,865	-		GFF1377	0.42	-0.2
1,400,870	-		GFF1377	0.43	-2.3
1,400,870	-		GFF1377	0.43	+0.0
1,400,870	-		GFF1377	0.43	+0.2
1,400,872	+		GFF1377	0.43	-0.7
1,400,895	+		GFF1377	0.45	-0.4
1,400,909	+		GFF1377	0.46	+1.3
1,400,909	+		GFF1377	0.46	+0.6
1,400,909	+		GFF1377	0.46	-0.2
1,400,909	+		GFF1377	0.46	-1.4
1,400,917	-		GFF1377	0.46	-0.3
1,400,917	-		GFF1377	0.46	+0.9
1,400,917	-		GFF1377	0.46	-1.5
1,400,919	+		GFF1377	0.46	-0.8
1,400,922	-		GFF1377	0.47	+0.4
1,400,922	-		GFF1377	0.47	-1.7
1,400,933	+		GFF1377	0.48	+0.0
1,400,939	+		GFF1377	0.48	-1.3
1,400,939	+		GFF1377	0.48	-1.3
1,400,939	+		GFF1377	0.48	-1.8
1,400,939	+		GFF1377	0.48	-0.1
1,400,941	-		GFF1377	0.48	-1.4
1,400,947	-		GFF1377	0.49	-1.3
1,400,950	-		GFF1377	0.49	+0.3
1,400,952	+		GFF1377	0.49	+0.7
1,400,955	-		GFF1377	0.49	+0.0
1,400,960	-		GFF1377	0.50	+1.1
1,401,010	+		GFF1377	0.54	-1.9
1,401,028	-		GFF1377	0.55	-0.7
1,401,032	+		GFF1377	0.56	+1.7
1,401,064	-		GFF1377	0.58	+0.7
1,401,124	+		GFF1377	0.63	+0.1
1,401,143	+		GFF1377	0.64	-0.6
1,401,143	+		GFF1377	0.64	+0.4
1,401,143	+		GFF1377	0.64	-0.4
1,401,143	+		GFF1377	0.64	-0.3
1,401,143	+		GFF1377	0.64	-1.8
1,401,151	-		GFF1377	0.65	-0.8
1,401,151	-		GFF1377	0.65	-1.4
1,401,151	-		GFF1377	0.65	-0.6
1,401,151	-		GFF1377	0.65	+0.2
1,401,151	-		GFF1377	0.65	-1.8
1,401,151	-		GFF1377	0.65	-0.9
1,401,151	-		GFF1377	0.65	+1.0
1,401,151	-		GFF1377	0.65	-0.6
1,401,153	+		GFF1377	0.65	+1.5
1,401,153	+		GFF1377	0.65	-0.4
1,401,153	+		GFF1377	0.65	-0.4
1,401,161	-		GFF1377	0.66	-1.9
1,401,161	-		GFF1377	0.66	+0.8
1,401,173	-		GFF1377	0.67	-1.2
1,401,199	-		GFF1377	0.69	-0.7
1,401,199	-		GFF1377	0.69	-0.0
1,401,210	-		GFF1377	0.70	-2.2
1,401,222	+		GFF1377	0.71	-1.3
1,401,222	+		GFF1377	0.71	+0.2
1,401,230	+		GFF1377	0.71	-1.3
1,401,230	+		GFF1377	0.71	-2.8
1,401,230	+		GFF1377	0.71	+0.4
1,401,238	-		GFF1377	0.72	-0.0
1,401,238	-		GFF1377	0.72	+0.1
1,401,238	-		GFF1377	0.72	-2.3
1,401,240	-		GFF1377	0.72	-1.0
1,401,241	+		GFF1377	0.72	-0.3
1,401,269	+		GFF1377	0.74	+0.0
1,401,285	-		GFF1377	0.76	-0.6
1,401,291	-		GFF1377	0.76	+1.3
1,401,315	+		GFF1377	0.78	-1.0
1,401,315	-		GFF1377	0.78	-0.5
1,401,315	-		GFF1377	0.78	-2.0
1,401,315	-		GFF1377	0.78	-0.7
1,401,315	-		GFF1377	0.78	+0.7
1,401,315	-		GFF1377	0.78	-1.7
1,401,318	+		GFF1377	0.78	-0.7
1,401,352	+		GFF1377	0.81	-0.8
1,401,352	+		GFF1377	0.81	+1.0
1,401,352	+		GFF1377	0.81	-2.2
1,401,352	+		GFF1377	0.81	+0.1
1,401,353	+		GFF1377	0.81	-0.2
1,401,362	+		GFF1377	0.82	-0.0
1,401,397	+		GFF1377	0.85	-0.6
1,401,397	+		GFF1377	0.85	-0.3
1,401,397	+		GFF1377	0.85	+0.2
1,401,432	-		GFF1377	0.87	-0.3
1,401,507	+				-1.5
1,401,507	+				-0.3
1,401,515	-				-1.6
1,401,533	+				+1.4
1,401,564	+				-1.4
1,401,566	+				-0.4
1,401,571	+				-3.7
1,401,576	+				+0.6
1,401,576	+				+0.8
1,401,579	-				+0.0
1,401,583	+				+1.3
1,401,584	-				+0.5
1,401,584	-				-2.1
1,401,584	-				-1.5
1,401,591	-				-0.5
1,401,591	-				+1.8
1,401,595	+				-0.6
1,401,629	+				+1.1
1,401,642	-				+0.2
1,401,652	+				-0.5
1,401,652	+				-0.7
1,401,652	-				-1.3
1,401,674	+		GFF1378	0.11	-1.6
1,401,743	-		GFF1378	0.20	+0.3
1,401,743	-		GFF1378	0.20	-0.2
1,401,753	+		GFF1378	0.21	+0.2
1,401,760	-		GFF1378	0.22	-0.4
1,401,771	-		GFF1378	0.24	-1.3
1,401,806	-		GFF1378	0.28	-0.7
1,401,806	-		GFF1378	0.28	+0.6
1,401,816	+		GFF1378	0.29	-1.6
1,401,820	+		GFF1378	0.30	-0.4
1,401,821	+		GFF1378	0.30	-0.7
1,401,821	+		GFF1378	0.30	-1.3
1,401,823	-		GFF1378	0.30	-2.6
1,401,828	-		GFF1378	0.31	+0.6
1,401,856	+		GFF1378	0.34	+0.4
1,401,856	+		GFF1378	0.34	-0.4
1,401,858	+		GFF1378	0.35	-0.8
1,401,866	-		GFF1378	0.36	-0.4
1,401,887	-		GFF1378	0.38	+0.2
1,401,894	+		GFF1378	0.39	-0.3
1,401,894	+		GFF1378	0.39	-1.5
1,401,894	+		GFF1378	0.39	-0.5
1,401,894	+		GFF1378	0.39	+1.6
1,401,895	+		GFF1378	0.39	-0.3
1,401,895	+		GFF1378	0.39	+0.0
1,401,902	-		GFF1378	0.40	-0.3
1,401,902	-		GFF1378	0.40	-1.1
1,401,902	-		GFF1378	0.40	-0.3
1,401,902	-		GFF1378	0.40	+0.5
1,401,902	-		GFF1378	0.40	-1.0
1,401,903	+		GFF1378	0.40	+0.2
1,401,903	+		GFF1378	0.40	-3.1
1,401,903	+		GFF1378	0.40	+0.5
1,401,903	-		GFF1378	0.40	-1.8
1,401,903	-		GFF1378	0.40	-0.6
1,401,903	-		GFF1378	0.40	-1.3
1,401,916	-		GFF1378	0.42	+0.3
1,401,931	+		GFF1378	0.44	-0.8
1,401,934	-		GFF1378	0.44	-1.3
1,401,943	-		GFF1378	0.46	+0.4
1,401,943	-		GFF1378	0.46	-1.2
1,401,945	+		GFF1378	0.46	-0.2
1,401,948	-		GFF1378	0.46	+0.4
1,401,953	-		GFF1378	0.47	+0.3
1,401,955	+		GFF1378	0.47	+0.4
1,401,962	+		GFF1378	0.48	-0.8
1,401,965	+		GFF1378	0.48	-1.2
1,401,987	+		GFF1378	0.51	-2.0
1,401,987	+		GFF1378	0.51	+0.5
1,401,992	+		GFF1378	0.52	-1.2
1,401,992	+		GFF1378	0.52	-1.0
1,401,992	+		GFF1378	0.52	-2.2
1,401,992	+		GFF1378	0.52	-1.2
1,401,992	+		GFF1378	0.52	-0.9
1,401,992	+		GFF1378	0.52	-1.1
1,401,998	+		GFF1378	0.53	+0.2
1,402,000	-		GFF1378	0.53	-0.0
1,402,000	-		GFF1378	0.53	-0.7
1,402,000	-		GFF1378	0.53	-0.3
1,402,000	-		GFF1378	0.53	+0.3
1,402,003	+		GFF1378	0.53	+0.9
1,402,008	+		GFF1378	0.54	-1.2
1,402,027	+		GFF1378	0.56	+1.0
1,402,030	+		GFF1378	0.57	-2.2
1,402,030	-		GFF1378	0.57	+0.4
1,402,032	-		GFF1378	0.57	-1.4
1,402,085	-		GFF1378	0.64	+0.8
1,402,085	-		GFF1378	0.64	-3.2
1,402,104	-		GFF1378	0.66	-0.4
1,402,108	+		GFF1378	0.67	-0.6
1,402,109	+		GFF1378	0.67	+0.4
1,402,109	+		GFF1378	0.67	+0.3
1,402,116	-		GFF1378	0.68	-0.5
1,402,117	-		GFF1378	0.68	+1.2
1,402,145	-		GFF1378	0.71	+0.8
1,402,148	-		GFF1378	0.72	-0.5
1,402,160	+		GFF1378	0.73	-0.2
1,402,198	+		GFF1378	0.78	-1.6
1,402,198	+		GFF1378	0.78	-0.0
1,402,208	+		GFF1378	0.79	-0.3
1,402,208	+		GFF1378	0.79	+0.3
1,402,208	+		GFF1378	0.79	-1.0
1,402,216	-		GFF1378	0.80	-0.3
1,402,230	+		GFF1378	0.82	+0.3
1,402,230	+		GFF1378	0.82	-1.8
1,402,237	+		GFF1378	0.83	+0.5
1,402,238	-		GFF1378	0.83	-1.8
1,402,238	-		GFF1378	0.83	-2.9
1,402,256	-		GFF1378	0.86	+0.2
1,402,265	+		GFF1378	0.87	+0.6
1,402,267	+		GFF1378	0.87	-1.1
1,402,267	+		GFF1378	0.87	+0.2
1,402,267	+		GFF1378	0.87	-2.2
1,402,273	-		GFF1378	0.88	+0.3
1,402,275	-		GFF1378	0.88	-0.7
1,402,275	-		GFF1378	0.88	-0.4
1,402,275	-		GFF1378	0.88	+0.9
1,402,301	-				-1.8
1,402,312	-				-1.5
1,402,340	+				-0.9
1,402,340	+				-1.2
1,402,343	-				-2.2
1,402,343	-				+0.2
1,402,345	+				+0.5
1,402,345	+				-1.4
1,402,345	+				-0.5
1,402,348	-				+1.2
1,402,353	-				+0.3
1,402,353	-				-2.3
1,402,357	+				-1.3
1,402,365	-				+0.0
1,402,375	-				-0.4
1,402,383	+				-0.6
1,402,391	-				-0.8
1,402,398	+				-0.9
1,402,420	+				-1.2
1,402,420	-				+0.1
1,402,420	-				-2.7
1,402,426	-				-0.0
1,402,428	-				-0.7
1,402,444	+				-1.1
1,402,444	+				+0.6
1,402,447	-				-0.7
1,402,447	-				+1.2
1,402,452	-				-2.1
1,402,452	-				+0.0
1,402,455	+				+0.4
1,402,476	+		GFF1379	0.11	+0.3
1,402,486	+		GFF1379	0.12	+0.3
1,402,505	-		GFF1379	0.14	-0.6
1,402,505	-		GFF1379	0.14	-0.5
1,402,507	+		GFF1379	0.15	-0.4
1,402,515	-		GFF1379	0.15	+0.5
1,402,516	-		GFF1379	0.16	-0.3
1,402,522	+		GFF1379	0.16	-1.1
1,402,522	+		GFF1379	0.16	-1.4
1,402,535	+		GFF1379	0.18	-0.0
1,402,535	+		GFF1379	0.18	+0.8
1,402,535	+		GFF1379	0.18	+0.8
1,402,541	+		GFF1379	0.18	+0.6
1,402,543	-		GFF1379	0.19	-0.6
1,402,549	-		GFF1379	0.19	-0.6
1,402,563	+		GFF1379	0.21	+0.6
1,402,563	+		GFF1379	0.21	+0.3