Strain Fitness in Sphingobium sp. HT1-2 around GFF1319

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,348,588	-				+1.6
1,348,594	+				-2.1
1,348,597	-				-0.3
1,348,608	+				+0.6
1,348,608	+				-1.0
1,348,608	+				-0.6
1,348,608	+				+0.1
1,348,608	+				-0.8
1,348,608	+				+0.5
1,348,608	+				+0.0
1,348,608	+				+0.1
1,348,616	-				-1.3
1,348,616	-				-0.6
1,348,616	-				-0.2
1,348,631	+				+0.5
1,348,631	+				-1.6
1,348,631	+				-0.0
1,348,670	-				+0.2
1,348,676	+				+0.7
1,348,676	+				+0.7
1,348,676	+				+0.1
1,348,682	+				-3.5
1,348,682	+				+0.1
1,348,682	+				+0.2
1,348,693	+				-0.0
1,348,701	-				-0.2
1,348,702	-				-0.8
1,348,703	+		GFF1318	0.10	-0.3
1,348,711	-		GFF1318	0.11	-1.3
1,348,731	+		GFF1318	0.13	+0.2
1,348,740	+		GFF1318	0.14	+0.5
1,348,740	+		GFF1318	0.14	+1.3
1,348,741	+		GFF1318	0.14	+0.2
1,348,741	+		GFF1318	0.14	-1.4
1,348,741	-		GFF1318	0.14	+0.8
1,348,748	-		GFF1318	0.15	+0.7
1,348,748	-		GFF1318	0.15	-0.4
1,348,749	-		GFF1318	0.15	-0.7
1,348,764	+		GFF1318	0.17	-0.2
1,348,764	+		GFF1318	0.17	+0.8
1,348,768	-		GFF1318	0.17	+0.1
1,348,772	-		GFF1318	0.18	-0.5
1,348,784	-		GFF1318	0.19	-1.6
1,348,791	-		GFF1318	0.20	-1.5
1,348,821	-		GFF1318	0.23	+0.6
1,348,823	+		GFF1318	0.23	+0.6
1,348,847	+		GFF1318	0.26	-0.4
1,348,855	-		GFF1318	0.27	-0.1
1,348,857	-		GFF1318	0.27	+1.1
1,348,914	-		GFF1318	0.33	-0.1
1,348,914	-		GFF1318	0.33	+0.0
1,348,914	-		GFF1318	0.33	+0.7
1,348,914	-		GFF1318	0.33	-1.0
1,348,919	+		GFF1318	0.34	+0.5
1,348,919	+		GFF1318	0.34	-0.7
1,348,927	-		GFF1318	0.35	+0.3
1,348,927	-		GFF1318	0.35	+0.2
1,348,932	-		GFF1318	0.35	-0.8
1,348,937	+		GFF1318	0.36	+1.2
1,348,937	+		GFF1318	0.36	-1.6
1,348,937	+		GFF1318	0.36	-0.4
1,348,937	+		GFF1318	0.36	-0.0
1,348,937	+		GFF1318	0.36	-0.4
1,348,937	+		GFF1318	0.36	-0.2
1,348,937	+		GFF1318	0.36	-0.1
1,348,937	+		GFF1318	0.36	-0.9
1,348,939	-		GFF1318	0.36	+0.1
1,348,945	-		GFF1318	0.37	-1.4
1,348,945	-		GFF1318	0.37	-0.2
1,348,945	-		GFF1318	0.37	+1.7
1,348,945	-		GFF1318	0.37	+0.4
1,348,945	-		GFF1318	0.37	-0.1
1,348,945	-		GFF1318	0.37	+0.3
1,348,945	-		GFF1318	0.37	-1.7
1,348,945	-		GFF1318	0.37	-0.3
1,348,945	-		GFF1318	0.37	+0.8
1,348,978	-		GFF1318	0.40	+0.5
1,348,986	-		GFF1318	0.41	-0.8
1,348,993	+		GFF1318	0.42	-1.0
1,349,003	+		GFF1318	0.43	+0.1
1,349,020	+		GFF1318	0.45	+0.3
1,349,028	-		GFF1318	0.46	+0.4
1,349,028	-		GFF1318	0.46	-2.0
1,349,028	-		GFF1318	0.46	-1.3
1,349,028	-		GFF1318	0.46	+0.9
1,349,032	-		GFF1318	0.46	+0.3
1,349,048	+		GFF1318	0.48	+1.0
1,349,065	-		GFF1318	0.50	-0.7
1,349,065	-		GFF1318	0.50	-0.0
1,349,068	+		GFF1318	0.50	+0.5
1,349,068	+		GFF1318	0.50	-0.8
1,349,072	+		GFF1318	0.50	-1.5
1,349,076	-		GFF1318	0.51	+0.7
1,349,085	-		GFF1318	0.52	+0.4
1,349,087	+		GFF1318	0.52	-0.0
1,349,087	+		GFF1318	0.52	+0.8
1,349,087	+		GFF1318	0.52	+0.1
1,349,088	-		GFF1318	0.52	+0.7
1,349,095	-		GFF1318	0.53	+0.8
1,349,095	-		GFF1318	0.53	+0.0
1,349,095	-		GFF1318	0.53	-0.1
1,349,095	-		GFF1318	0.53	+0.8
1,349,095	-		GFF1318	0.53	+0.1
1,349,095	-		GFF1318	0.53	-1.4
1,349,095	-		GFF1318	0.53	-1.2
1,349,095	-		GFF1318	0.53	+1.3
1,349,095	-		GFF1318	0.53	+1.0
1,349,117	+		GFF1318	0.55	-0.5
1,349,135	-		GFF1318	0.57	-0.5
1,349,136	+		GFF1318	0.57	+1.2
1,349,161	+		GFF1318	0.60	-0.4
1,349,171	+		GFF1318	0.61	-0.7
1,349,175	-		GFF1318	0.62	-1.4
1,349,180	-		GFF1318	0.62	-0.1
1,349,181	+		GFF1318	0.62	-0.7
1,349,195	+		GFF1318	0.64	-1.3
1,349,211	+		GFF1318	0.66	-1.0
1,349,214	-		GFF1318	0.66	-2.0
1,349,219	-		GFF1318	0.66	+0.9
1,349,230	+		GFF1318	0.68	-0.3
1,349,237	+		GFF1318	0.68	-0.7
1,349,242	+		GFF1318	0.69	+0.8
1,349,242	+		GFF1318	0.69	+0.0
1,349,276	+		GFF1318	0.73	-0.2
1,349,276	+		GFF1318	0.73	-0.0
1,349,276	+		GFF1318	0.73	-0.4
1,349,276	+		GFF1318	0.73	-1.7
1,349,276	+		GFF1318	0.73	-2.0
1,349,277	-		GFF1318	0.73	+0.5
1,349,282	-		GFF1318	0.73	+0.2
1,349,284	-		GFF1318	0.74	+0.4
1,349,284	-		GFF1318	0.74	+1.0
1,349,284	-		GFF1318	0.74	-0.6
1,349,323	+		GFF1318	0.78	-0.9
1,349,331	-		GFF1318	0.79	+0.8
1,349,331	-		GFF1318	0.79	-0.1
1,349,331	-		GFF1318	0.79	+1.5
1,349,333	+		GFF1318	0.79	-0.8
1,349,336	-		GFF1318	0.79	-2.4
1,349,341	-		GFF1318	0.80	+1.5
1,349,344	+		GFF1318	0.80	-0.1
1,349,351	-		GFF1318	0.81	+0.1
1,349,359	-		GFF1318	0.82	-0.3
1,349,361	-		GFF1318	0.82	+1.1
1,349,361	-		GFF1318	0.82	-1.9
1,349,361	-		GFF1318	0.82	+0.1
1,349,361	-		GFF1318	0.82	+1.0
1,349,361	-		GFF1318	0.82	-2.1
1,349,365	+		GFF1318	0.82	+0.4
1,349,381	-		GFF1318	0.84	-1.2
1,349,392	-		GFF1318	0.85	-2.1
1,349,409	+		GFF1318	0.87	+0.2
1,349,414	+		GFF1318	0.88	-0.3
1,349,417	-		GFF1318	0.88	-1.5
1,349,427	-		GFF1318	0.89	-1.7
1,349,438	-				-0.1
1,349,439	+				+0.6
1,349,462	+				-0.7
1,349,528	+				-0.2
1,349,536	+				-0.7
1,349,536	+				+1.0
1,349,624	+		GFF1319	0.10	-1.1
1,349,630	+		GFF1319	0.12	+0.4
1,349,659	-		GFF1319	0.19	+0.9
1,349,699	-		GFF1319	0.28	-0.1
1,349,702	+		GFF1319	0.29	+0.3
1,349,705	+		GFF1319	0.29	-2.1
1,349,710	+		GFF1319	0.31	+0.7
1,349,740	+		GFF1319	0.38	+0.3
1,349,740	+		GFF1319	0.38	+0.6
1,349,742	+		GFF1319	0.38	+1.1
1,349,748	-		GFF1319	0.39	-0.8
1,349,748	-		GFF1319	0.39	-0.4
1,349,748	-		GFF1319	0.39	-0.7
1,349,748	-		GFF1319	0.39	+0.6
1,349,759	+		GFF1319	0.42	-0.6
1,349,759	+		GFF1319	0.42	+0.3
1,349,759	+		GFF1319	0.42	-1.8
1,349,760	-		GFF1319	0.42	-0.6
1,349,767	-		GFF1319	0.44	-1.3
1,349,767	-		GFF1319	0.44	+0.8
1,349,767	-		GFF1319	0.44	-1.6
1,349,772	+		GFF1319	0.45	+0.2
1,349,772	+		GFF1319	0.45	-0.5
1,349,772	+		GFF1319	0.45	-2.7
1,349,772	+		GFF1319	0.45	+0.3
1,349,772	+		GFF1319	0.45	+0.4
1,349,780	-		GFF1319	0.47	-1.5
1,349,780	-		GFF1319	0.47	-1.1
1,349,780	-		GFF1319	0.47	-0.2
1,349,780	-		GFF1319	0.47	+0.7
1,349,780	-		GFF1319	0.47	+0.5
1,349,780	-		GFF1319	0.47	-1.6
1,349,785	-		GFF1319	0.48	+0.2
1,349,864	-		GFF1319	0.66	-0.6
1,349,864	-		GFF1319	0.66	-0.4
1,349,866	+		GFF1319	0.67	-0.6
1,349,866	+		GFF1319	0.67	+0.9
1,349,866	+		GFF1319	0.67	+0.6
1,349,874	-		GFF1319	0.69	-1.7
1,349,874	-		GFF1319	0.69	+0.3
1,349,874	-		GFF1319	0.69	-0.5
1,349,895	+		GFF1319	0.74	-1.3
1,349,895	+		GFF1319	0.74	-0.3
1,349,903	-		GFF1319	0.76	+0.0
1,349,903	-		GFF1319	0.76	-0.9
1,349,903	-		GFF1319	0.76	+2.0
1,349,919	+		GFF1319	0.79	-0.4
1,349,930	+		GFF1319	0.82	-0.3
1,349,930	+		GFF1319	0.82	+1.4
1,349,938	-		GFF1319	0.84	-0.0
1,349,938	-		GFF1319	0.84	-2.1
1,349,938	-		GFF1319	0.84	+0.6
1,349,938	-		GFF1319	0.84	+0.8
1,349,947	+		GFF1319	0.86	+1.5
1,349,947	+		GFF1319	0.86	-1.4
1,349,947	-		GFF1319	0.86	+0.6
1,349,952	+		GFF1319	0.87	-0.6
1,349,962	+		GFF1319	0.89	+0.2
1,349,967	+				-0.8
1,349,975	+				-2.5
1,349,975	-				+0.2
1,349,989	+				-1.3
1,349,990	+				+0.4
1,349,990	+				-1.0
1,349,990	+				+0.4
1,349,990	+				+0.7
1,349,998	-				+0.2
1,350,026	+				+0.3
1,350,026	+				-1.3
1,350,034	-				+0.7
1,350,034	-				-1.0
1,350,034	-				-1.8
1,350,034	-				-0.3
1,350,034	-				+1.0
1,350,039	-				-0.8
1,350,039	-				-0.4
1,350,039	-				+1.0
1,350,046	-				+0.4
1,350,079	-		GFF1320	0.17	+0.9
1,350,088	-		GFF1320	0.20	+0.7
1,350,103	-		GFF1320	0.25	+2.1
1,350,114	-		GFF1320	0.29	+0.3
1,350,124	+		GFF1320	0.32	-1.0
1,350,132	-		GFF1320	0.35	-1.1
1,350,136	+		GFF1320	0.36	+0.0
1,350,146	-		GFF1320	0.39	+0.4
1,350,146	-		GFF1320	0.39	-0.2
1,350,146	-		GFF1320	0.39	+1.2
1,350,148	+		GFF1320	0.40	+1.0
1,350,153	+		GFF1320	0.42	-0.8
1,350,156	-		GFF1320	0.43	-0.0
1,350,156	-		GFF1320	0.43	+0.2
1,350,171	+		GFF1320	0.48	+0.3
1,350,180	+		GFF1320	0.51	-0.0
1,350,193	-		GFF1320	0.55	-0.6
1,350,205	-		GFF1320	0.59	-0.9
1,350,254	-		GFF1320	0.75	-0.5
1,350,264	-		GFF1320	0.79	+0.2
1,350,269	-		GFF1320	0.80	-1.6
1,350,300	+				-1.4
1,350,300	+				-0.5
1,350,300	+				-1.6
1,350,300	+				+0.2
1,350,300	+				+1.1
1,350,307	-				-0.5
1,350,308	-				-0.1
1,350,308	-				-1.2
1,350,308	-				+0.3
1,350,308	-				+1.0
1,350,338	+				-0.3
1,350,339	-				+0.4
1,350,346	+				-0.2
1,350,352	-				+0.8
1,350,354	-				-1.1
1,350,356	+				-1.6
1,350,361	+		GFF1321	0.11	+0.8
1,350,366	+		GFF1321	0.12	+0.2
1,350,378	+		GFF1321	0.16	+0.7
1,350,379	-		GFF1321	0.16	+0.4
1,350,387	-		GFF1321	0.18	-0.1
1,350,387	-		GFF1321	0.18	+1.0
1,350,397	+		GFF1321	0.21	+1.2
1,350,397	+		GFF1321	0.21	-0.3
1,350,397	+		GFF1321	0.21	+0.2
1,350,397	+		GFF1321	0.21	+0.2
1,350,397	+		GFF1321	0.21	+1.2
1,350,397	+		GFF1321	0.21	+1.0
1,350,397	+		GFF1321	0.21	+0.6
1,350,402	+		GFF1321	0.23	-0.8
1,350,402	+		GFF1321	0.23	-0.6
1,350,402	+		GFF1321	0.23	-0.4
1,350,405	-		GFF1321	0.23	-0.4
1,350,405	-		GFF1321	0.23	-1.3
1,350,405	-		GFF1321	0.23	+1.2
1,350,405	-		GFF1321	0.23	-0.3
1,350,405	-		GFF1321	0.23	+2.3
1,350,410	-		GFF1321	0.25	-1.5
1,350,410	-		GFF1321	0.25	-0.3
1,350,410	-		GFF1321	0.25	+1.2
1,350,410	-		GFF1321	0.25	-0.4
1,350,416	+		GFF1321	0.27	-1.6
1,350,424	-		GFF1321	0.29	-1.3
1,350,442	-		GFF1321	0.34	-1.0
1,350,442	-		GFF1321	0.34	-0.9
1,350,480	+		GFF1321	0.45	-0.3
1,350,480	+		GFF1321	0.45	+0.2
1,350,480	+		GFF1321	0.45	+0.2
1,350,480	+		GFF1321	0.45	-1.3
1,350,480	+		GFF1321	0.45	-1.4
1,350,480	+		GFF1321	0.45	+0.7
1,350,480	+		GFF1321	0.45	+0.7
1,350,488	-		GFF1321	0.48	-0.3
1,350,488	-		GFF1321	0.48	-0.6
1,350,488	-		GFF1321	0.48	+0.7
1,350,488	-		GFF1321	0.48	+0.0
1,350,488	-		GFF1321	0.48	-1.4
1,350,488	-		GFF1321	0.48	-0.0
1,350,488	-		GFF1321	0.48	-0.7
1,350,490	+		GFF1321	0.48	+0.5
1,350,490	+		GFF1321	0.48	-0.1
1,350,490	+		GFF1321	0.48	-0.6
1,350,490	+		GFF1321	0.48	-0.3
1,350,490	+		GFF1321	0.48	-0.7
1,350,490	+		GFF1321	0.48	+0.1
1,350,490	+		GFF1321	0.48	-1.5
1,350,490	+		GFF1321	0.48	+0.3
1,350,490	+		GFF1321	0.48	+0.3
1,350,490	+		GFF1321	0.48	+1.3
1,350,490	+		GFF1321	0.48	+0.1
1,350,490	+		GFF1321	0.48	+0.3
1,350,490	+		GFF1321	0.48	-1.7
1,350,490	+		GFF1321	0.48	-0.1
1,350,490	+		GFF1321	0.48	+0.2
1,350,490	+		GFF1321	0.48	+0.7
1,350,490	+		GFF1321	0.48	-0.7
1,350,490	+		GFF1321	0.48	+1.4
1,350,498	-		GFF1321	0.50	+0.2
1,350,498	-		GFF1321	0.50	+0.5
1,350,498	-		GFF1321	0.50	+0.6
1,350,498	-		GFF1321	0.50	+0.1
1,350,498	-		GFF1321	0.50	-0.3
1,350,498	-		GFF1321	0.50	-0.5
1,350,498	-		GFF1321	0.50	-0.6
1,350,498	-		GFF1321	0.50	+0.1
1,350,498	-		GFF1321	0.50	-1.7
1,350,498	-		GFF1321	0.50	-1.3
1,350,498	-		GFF1321	0.50	-1.0
1,350,498	-		GFF1321	0.50	-0.3
1,350,498	-		GFF1321	0.50	-0.8
1,350,498	-		GFF1321	0.50	-1.4
1,350,498	-		GFF1321	0.50	+0.1
1,350,498	-		GFF1321	0.50	+0.8
1,350,498	-		GFF1321	0.50	+0.9
1,350,498	-		GFF1321	0.50	+0.5
1,350,498	-		GFF1321	0.50	-1.9
1,350,498	-		GFF1321	0.50	+0.8
1,350,513	-		GFF1321	0.55	+0.2
1,350,531	+		GFF1321	0.60	-1.0
1,350,531	+		GFF1321	0.60	+0.8
1,350,558	+		GFF1321	0.68	+0.4
1,350,567	-		GFF1321	0.70	-0.3
1,350,577	-		GFF1321	0.73	-0.3
1,350,577	-		GFF1321	0.73	-0.4
1,350,603	-		GFF1321	0.81	-0.1
1,350,623	+		GFF1321	0.87	+0.9
1,350,625	-		GFF1321	0.87	-0.9
1,350,634	+				+0.4
1,350,634	+				+0.6
1,350,634	+				+0.6
1,350,634	+				-1.3
1,350,634	+				+0.8
1,350,634	+				+0.5
1,350,634	+				-1.0
1,350,634	+				-0.1
1,350,635	-				+0.8
1,350,642	-				+0.1
1,350,642	-				-0.7
1,350,642	-				-1.7
1,350,642	-				+0.1
1,350,649	+				-1.4
1,350,649	+				+1.5
1,350,650	-				-0.4
1,350,657	-				+0.3
1,350,670	+				+1.6
1,350,670	+				-0.2
1,350,674	+				-0.2
1,350,674	+				-2.4
1,350,676	+				+0.7
1,350,676	+				-1.4
1,350,749	+		GFF1322	0.22	-0.6
1,350,781	-		GFF1322	0.31	-1.0
1,350,799	-		GFF1322	0.36	-1.1
1,350,800	-		GFF1322	0.36	-1.1
1,350,811	-		GFF1322	0.39	-1.9
1,350,820	-		GFF1322	0.41	-1.3
1,350,827	+		GFF1322	0.43	-0.4
1,350,828	+		GFF1322	0.43	-2.3
1,350,832	+		GFF1322	0.45	+0.2
1,350,832	+		GFF1322	0.45	-0.3
1,350,835	-		GFF1322	0.45	-0.1
1,350,840	-		GFF1322	0.47	-1.6
1,350,840	-		GFF1322	0.47	+0.1
1,350,855	+		GFF1322	0.51	-0.4
1,350,855	+		GFF1322	0.51	+0.7
1,350,865	+		GFF1322	0.53	+0.8
1,350,872	-		GFF1322	0.55	+0.2
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1,350,873	-		GFF1322	0.55	+0.1
1,350,873	-		GFF1322	0.55	-0.4
1,350,876	+		GFF1322	0.56	-1.1
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1,350,876	+		GFF1322	0.56	-0.6
1,350,876	+		GFF1322	0.56	+1.3
1,350,896	+		GFF1322	0.62	-1.5
1,350,896	+		GFF1322	0.62	-0.5
1,350,904	-		GFF1322	0.64	+0.3
1,350,904	-		GFF1322	0.64	-1.1
1,350,916	+		GFF1322	0.67	-0.5
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1,350,916	+		GFF1322	0.67	+0.3
1,350,924	-		GFF1322	0.69	-1.1
1,350,924	-		GFF1322	0.69	+0.2
1,350,924	-		GFF1322	0.69	+0.2
1,350,924	-		GFF1322	0.69	+0.6
1,350,926	-		GFF1322	0.70	+0.3
1,350,933	+		GFF1322	0.71	+0.5
1,350,933	+		GFF1322	0.71	+0.1
1,350,941	-		GFF1322	0.74	-1.0
1,350,941	-		GFF1322	0.74	-2.4
1,350,941	-		GFF1322	0.74	+0.8
1,350,945	+		GFF1322	0.75	-0.3
1,350,945	+		GFF1322	0.75	-0.4
1,350,950	+		GFF1322	0.76	-0.4
1,350,953	-		GFF1322	0.77	-0.1
1,350,953	-		GFF1322	0.77	+0.1
1,350,958	-		GFF1322	0.78	-0.0
1,350,958	-		GFF1322	0.78	-0.1
1,350,963	-		GFF1322	0.79	-1.5
1,350,966	+		GFF1322	0.80	+1.2
1,350,987	+		GFF1322	0.86	+0.3
1,350,987	+		GFF1322	0.86	-0.1
1,350,987	+		GFF1322	0.86	-0.7
1,350,987	+		GFF1322	0.86	-0.1
1,350,987	+		GFF1322	0.86	+0.7
1,350,987	+		GFF1322	0.86	-1.7
1,350,987	+		GFF1322	0.86	-0.0
1,350,987	+		GFF1322	0.86	-0.1
1,350,990	-		GFF1322	0.87	-2.5
1,350,990	-		GFF1322	0.87	+0.1
1,350,992	+		GFF1322	0.87	-1.5
1,350,992	+		GFF1322	0.87	+0.1
1,350,992	+		GFF1322	0.87	+0.8
1,350,992	+		GFF1322	0.87	+0.3
1,350,995	-		GFF1322	0.88	+1.1
1,350,995	-		GFF1322	0.88	-0.2
1,350,995	-		GFF1322	0.88	+0.1
1,350,995	-		GFF1322	0.88	+0.5
1,350,995	-		GFF1322	0.88	+1.6
1,350,995	-		GFF1322	0.88	+0.4
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1,351,000	-		GFF1322	0.89	+0.3
1,351,000	-		GFF1322	0.89	-0.6
1,351,000	-		GFF1322	0.89	+1.6
1,351,005	-				-2.5
1,351,005	-				-0.9
1,351,005	-				-0.3
1,351,005	-				+0.1