Strain Fitness in Sphingobium sp. HT1-2 around GFF1306

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,333,277	-				-0.4
1,333,277	-				+1.1
1,333,283	+				-0.1
1,333,283	+				-2.1
1,333,291	-				+0.4
1,333,291	-				+0.3
1,333,365	-				-0.1
1,333,365	-				-1.3
1,333,365	-				+0.2
1,333,372	-				+0.9
1,333,377	+				+0.1
1,333,377	+				-2.3
1,333,377	+				+0.8
1,333,377	+				-0.9
1,333,377	-				-0.4
1,333,385	-				-1.0
1,333,395	-				+0.3
1,333,439	+				-1.6
1,333,439	+				-0.7
1,333,439	+				-0.1
1,333,439	+				-0.5
1,333,439	+				-1.4
1,333,442	-				-1.6
1,333,444	+				-0.9
1,333,447	-				-0.2
1,333,447	-				+1.4
1,333,452	-				+0.0
1,333,504	+				+0.5
1,333,504	+				-1.2
1,333,512	-				+0.3
1,333,538	+				+0.1
1,333,538	+				-0.2
1,333,538	+				-0.9
1,333,538	+				-0.7
1,333,546	-				+0.7
1,333,546	-				-0.4
1,333,546	-				-2.3
1,333,546	-				+1.1
1,333,546	-				+0.0
1,333,546	-				+0.4
1,333,564	+				-0.5
1,333,572	-				-1.2
1,333,590	+				+0.7
1,333,628	+				-1.4
1,333,628	+				-0.6
1,333,636	-				-0.5
1,333,636	-				+1.0
1,333,662	+				-0.4
1,333,662	+				-0.0
1,333,663	+				-0.1
1,333,663	+				+0.2
1,333,663	+				+1.2
1,333,664	-				-0.3
1,333,669	+				-1.3
1,333,670	+				-1.2
1,333,670	+				-1.1
1,333,671	-				-0.2
1,333,672	-				+0.4
1,333,675	+				-1.1
1,333,677	-				-0.4
1,333,677	-				-0.1
1,333,677	-				+0.5
1,333,678	-				-0.6
1,333,678	-				+0.0
1,333,680	+				+0.1
1,333,680	+				-0.8
1,333,680	+				-0.7
1,333,680	+				-1.8
1,333,680	+				+0.9
1,333,680	-				-0.3
1,333,683	-				-0.1
1,333,688	-				+1.7
1,333,688	-				-0.8
1,333,688	-				-0.6
1,333,688	-				-0.7
1,333,688	-				+0.9
1,333,688	-				-1.7
1,333,730	+				+0.8
1,333,825	+				-1.1
1,333,827	-				+0.3
1,333,830	+				+0.1
1,333,830	+				-0.3
1,333,830	+				-1.3
1,333,831	-				-3.0
1,333,837	+				+0.0
1,333,837	+				+0.3
1,333,845	-				+0.9
1,333,845	-				-0.4
1,333,880	+				+1.4
1,333,900	+				-1.0
1,333,900	+				+0.7
1,333,900	+				+1.0
1,333,900	+				-1.0
1,333,900	+				-0.0
1,333,900	+				-0.4
1,333,900	+				+1.2
1,333,900	+				-0.1
1,333,900	+				-0.5
1,333,901	+				+1.1
1,333,901	+				-0.2
1,333,908	-				-0.3
1,333,908	-				-2.3
1,333,908	-				-1.1
1,333,926	-				-1.9
1,333,945	+				-2.3
1,333,945	+				-0.5
1,333,960	+				+1.0
1,333,960	+				-0.2
1,333,960	-				+0.1
1,333,960	-				+0.3
1,333,960	-				-1.1
1,333,960	-				-1.4
1,333,960	-				-0.0
1,333,965	+				+0.5
1,333,968	-				-1.9
1,333,977	-				-1.5
1,333,996	-				+1.7
1,334,004	+				-0.4
1,334,032	-				+0.6
1,334,032	-				-0.4
1,334,037	+				-0.0
1,334,043	+				-1.0
1,334,045	-				-0.1
1,334,063	+				-0.9
1,334,068	+				-1.9
1,334,071	-				-0.6
1,334,078	+				-0.3
1,334,083	+				+0.8
1,334,103	-		GFF1305	0.19	+1.5
1,334,110	+		GFF1305	0.25	+0.3
1,334,119	+		GFF1305	0.33	-1.1
1,334,124	+		GFF1305	0.37	-1.1
1,334,124	+		GFF1305	0.37	-1.5
1,334,124	+		GFF1305	0.37	+0.1
1,334,128	-		GFF1305	0.40	-0.3
1,334,143	+		GFF1305	0.53	+0.5
1,334,144	+		GFF1305	0.53	+0.1
1,334,151	-		GFF1305	0.59	+0.2
1,334,151	-		GFF1305	0.59	+0.4
1,334,155	+		GFF1305	0.62	+1.0
1,334,207	+				+0.6
1,334,207	+				-0.1
1,334,215	-				+1.1
1,334,243	-				-0.9
1,334,243	-				-0.7
1,334,250	+				-1.4
1,334,266	+				-1.5
1,334,274	-				-1.3
1,334,282	+				-0.3
1,334,282	+				+1.0
1,334,282	+				+0.1
1,334,290	-				+0.9
1,334,319	+		GFF1306	0.21	+0.1
1,334,319	+		GFF1306	0.21	-1.1
1,334,319	+		GFF1306	0.21	+0.9
1,334,319	+		GFF1306	0.21	-0.6
1,334,319	+		GFF1306	0.21	+0.4
1,334,327	-		GFF1306	0.25	+0.4
1,334,327	-		GFF1306	0.25	+0.8
1,334,329	+		GFF1306	0.26	+0.1
1,334,343	+		GFF1306	0.33	-0.3
1,334,343	+		GFF1306	0.33	+0.4
1,334,343	+		GFF1306	0.33	+0.9
1,334,351	-		GFF1306	0.37	+0.6
1,334,359	-		GFF1306	0.41	+0.6
1,334,359	-		GFF1306	0.41	-0.9
1,334,359	-		GFF1306	0.41	+1.2
1,334,368	+		GFF1306	0.45	-1.1
1,334,386	-		GFF1306	0.54	+0.1
1,334,387	+		GFF1306	0.55	-2.7
1,334,409	+		GFF1306	0.66	+0.3
1,334,413	-		GFF1306	0.68	-0.0
1,334,458	+				-0.3
1,334,474	-				+1.2
1,334,490	+				+0.3
1,334,490	+				+1.6
1,334,490	+				+0.3
1,334,490	+				+0.1
1,334,490	+				-1.3
1,334,490	+				+0.0
1,334,490	+				+1.0
1,334,490	+				-0.9
1,334,490	+				-0.7
1,334,490	+				-1.8
1,334,490	+				+0.3
1,334,490	+				+0.2
1,334,490	+				+0.9
1,334,490	+				+1.1
1,334,490	+				-0.9
1,334,490	+				-0.5
1,334,490	+				-1.2
1,334,490	+				-0.8
1,334,492	+				-0.2
1,334,495	+				-0.5
1,334,495	+				-1.2
1,334,498	-				+1.6
1,334,498	-				-1.8
1,334,498	-				-0.5
1,334,498	-				-0.1
1,334,498	-				+0.3
1,334,498	-				+0.3
1,334,498	-				-1.3
1,334,498	-				-0.6
1,334,498	-				+0.3
1,334,498	-				+0.3
1,334,498	-				-1.6
1,334,498	-				+0.6
1,334,498	-				-1.7
1,334,498	-				-1.4
1,334,498	-				-0.4
1,334,498	-				-2.2
1,334,498	-				-1.2
1,334,498	-				+0.1
1,334,498	-				+0.3
1,334,498	-				+0.2
1,334,498	-				+0.3
1,334,498	-				-1.0
1,334,498	-				-0.5
1,334,498	-				+0.5
1,334,498	-				-1.3
1,334,506	+				-0.3
1,334,509	-				-1.2
1,334,514	+				+0.7
1,334,514	+				-1.8
1,334,514	+				-0.9
1,334,514	+				-0.3
1,334,519	+				+0.3
1,334,522	-				+0.6
1,334,522	-				+0.5
1,334,526	+				-0.4
1,334,531	+				+0.9
1,334,600	+		GFF1307	0.17	-2.1
1,334,614	-		GFF1307	0.19	+1.1
1,334,634	-		GFF1307	0.22	-0.3
1,334,641	-		GFF1307	0.23	-0.6
1,334,647	-		GFF1307	0.24	-0.7
1,334,671	-		GFF1307	0.28	+0.0
1,334,718	-		GFF1307	0.35	+1.3
1,334,771	-		GFF1307	0.43	+0.9
1,334,771	-		GFF1307	0.43	-0.5
1,334,773	-		GFF1307	0.43	-1.1
1,334,807	+		GFF1307	0.49	-0.3
1,334,808	+		GFF1307	0.49	+0.7
1,334,808	+		GFF1307	0.49	+0.2
1,334,808	+		GFF1307	0.49	-0.1
1,334,809	+		GFF1307	0.49	-0.4
1,334,814	+		GFF1307	0.50	-1.4
1,334,814	+		GFF1307	0.50	+1.6
1,334,815	-		GFF1307	0.50	-0.5
1,334,816	-		GFF1307	0.50	-0.5
1,334,816	-		GFF1307	0.50	-1.3
1,334,816	-		GFF1307	0.50	-0.7
1,334,816	-		GFF1307	0.50	+0.6
1,334,818	+		GFF1307	0.50	-0.1
1,334,822	-		GFF1307	0.51	-0.1
1,334,823	+		GFF1307	0.51	-0.6
1,334,823	+		GFF1307	0.51	+0.8
1,334,826	-		GFF1307	0.52	-0.0
1,334,826	-		GFF1307	0.52	+0.0
1,334,831	-		GFF1307	0.52	-1.8
1,334,836	-		GFF1307	0.53	+0.6
1,334,845	-		GFF1307	0.55	+0.4
1,334,847	-		GFF1307	0.55	+0.3
1,334,847	-		GFF1307	0.55	+0.5
1,334,870	+		GFF1307	0.58	+0.8
1,334,870	+		GFF1307	0.58	+0.4
1,334,878	-		GFF1307	0.60	+0.3
1,334,905	+		GFF1307	0.64	+0.1
1,334,913	-		GFF1307	0.65	+0.7
1,334,971	+		GFF1307	0.74	-0.4
1,334,985	+		GFF1307	0.76	+0.3
1,334,988	-		GFF1307	0.77	-0.3
1,334,993	-		GFF1307	0.78	+0.5
1,335,004	+		GFF1307	0.79	+0.3
1,335,019	-		GFF1307	0.82	-0.4
1,335,029	-		GFF1307	0.83	+0.0
1,335,034	-		GFF1307	0.84	-1.5
1,335,058	-		GFF1307	0.88	-0.9
1,335,058	-		GFF1307	0.88	+0.8
1,335,091	+				-2.0
1,335,099	+				-1.3
1,335,099	+				+0.4
1,335,099	+				-1.9
1,335,107	-				-1.4
1,335,107	-				+0.0
1,335,113	+				+1.3
1,335,113	+				-1.0
1,335,118	+				-0.5
1,335,126	-				-1.6
1,335,126	-				-0.7
1,335,126	-				+0.4
1,335,126	-				+1.1
1,335,126	-				+1.4
1,335,138	+				-0.3
1,335,138	+				-0.3
1,335,138	+				+0.4
1,335,138	+				-1.3
1,335,144	-				+0.6
1,335,151	-				+0.1
1,335,151	-				-1.3
1,335,151	-				-0.1
1,335,163	-				-1.0
1,335,179	+				-1.8
1,335,179	+				-1.3
1,335,187	-				-0.2
1,335,187	-				-0.6
1,335,190	+				-1.4
1,335,212	+				-0.2
1,335,226	+				-0.6
1,335,227	-				+0.5
1,335,239	-				-0.5
1,335,242	-		GFF1308	0.11	+0.5
1,335,242	-		GFF1308	0.11	-0.0
1,335,242	-		GFF1308	0.11	+0.2
1,335,242	-		GFF1308	0.11	-0.8
1,335,266	+		GFF1308	0.21	+1.2
1,335,293	-		GFF1308	0.32	-0.4
1,335,293	-		GFF1308	0.32	-0.9
1,335,330	-		GFF1308	0.47	-1.3
1,335,344	+		GFF1308	0.53	-0.9
1,335,352	-		GFF1308	0.56	+0.4
1,335,354	-		GFF1308	0.57	-1.1
1,335,388	-		GFF1308	0.71	+1.0
1,335,400	-		GFF1308	0.76	+0.2
1,335,422	+		GFF1308	0.85	-0.2
1,335,427	+		GFF1308	0.87	-0.2
1,335,432	+		GFF1308	0.89	-0.6
1,335,438	+				-0.4
1,335,440	-				+1.0
1,335,457	+				-0.1
1,335,460	-				-0.6