Strain Fitness in Sphingobium sp. HT1-2 around GFF1279

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,307,221	+		GFF1278	0.44	-0.2
1,307,242	+		GFF1278	0.46	-1.4
1,307,242	+		GFF1278	0.46	-2.1
1,307,265	+		GFF1278	0.47	-0.7
1,307,265	-		GFF1278	0.47	-1.1
1,307,269	+		GFF1278	0.47	-1.6
1,307,269	+		GFF1278	0.47	+0.8
1,307,285	-		GFF1278	0.48	-0.6
1,307,321	+		GFF1278	0.50	+0.8
1,307,329	-		GFF1278	0.51	-0.3
1,307,335	+		GFF1278	0.51	-0.4
1,307,338	-		GFF1278	0.51	-1.2
1,307,343	+		GFF1278	0.52	-0.9
1,307,343	-		GFF1278	0.52	+0.1
1,307,343	-		GFF1278	0.52	-1.3
1,307,343	-		GFF1278	0.52	-0.4
1,307,356	+		GFF1278	0.52	-2.0
1,307,379	+		GFF1278	0.54	+0.5
1,307,387	-		GFF1278	0.54	-1.0
1,307,420	+		GFF1278	0.56	-1.5
1,307,423	-		GFF1278	0.56	+0.2
1,307,428	-		GFF1278	0.56	+0.3
1,307,430	+		GFF1278	0.57	-0.3
1,307,431	+		GFF1278	0.57	-0.6
1,307,433	-		GFF1278	0.57	+0.7
1,307,436	+		GFF1278	0.57	+1.1
1,307,436	+		GFF1278	0.57	-0.1
1,307,438	-		GFF1278	0.57	+0.2
1,307,438	-		GFF1278	0.57	+0.2
1,307,439	-		GFF1278	0.57	-0.8
1,307,444	-		GFF1278	0.57	-0.1
1,307,457	+		GFF1278	0.58	+0.2
1,307,457	+		GFF1278	0.58	+0.5
1,307,474	+		GFF1278	0.59	+1.1
1,307,487	-		GFF1278	0.60	-1.1
1,307,500	+		GFF1278	0.61	-1.5
1,307,500	+		GFF1278	0.61	+0.1
1,307,500	+		GFF1278	0.61	+0.6
1,307,508	-		GFF1278	0.61	+0.3
1,307,508	-		GFF1278	0.61	-0.5
1,307,508	-		GFF1278	0.61	+1.4
1,307,529	+		GFF1278	0.62	+1.2
1,307,573	+		GFF1278	0.65	+0.9
1,307,581	-		GFF1278	0.65	-1.1
1,307,588	+		GFF1278	0.66	-0.1
1,307,588	+		GFF1278	0.66	-1.5
1,307,588	-		GFF1278	0.66	-1.2
1,307,596	-		GFF1278	0.66	+0.5
1,307,596	-		GFF1278	0.66	-0.4
1,307,598	-		GFF1278	0.66	-0.1
1,307,611	-		GFF1278	0.67	-0.4
1,307,611	-		GFF1278	0.67	-1.4
1,307,619	-		GFF1278	0.68	-0.7
1,307,627	-		GFF1278	0.68	+1.3
1,307,641	-		GFF1278	0.69	+0.6
1,307,654	-		GFF1278	0.70	-0.5
1,307,654	-		GFF1278	0.70	-0.7
1,307,654	-		GFF1278	0.70	-1.1
1,307,654	-		GFF1278	0.70	-0.2
1,307,654	-		GFF1278	0.70	-0.0
1,307,659	-		GFF1278	0.70	-0.4
1,307,683	+		GFF1278	0.71	-2.5
1,307,683	+		GFF1278	0.71	-0.4
1,307,717	+		GFF1278	0.73	+0.3
1,307,722	+		GFF1278	0.74	+0.7
1,307,724	-		GFF1278	0.74	+0.3
1,307,724	-		GFF1278	0.74	+0.5
1,307,730	-		GFF1278	0.74	-0.6
1,307,730	-		GFF1278	0.74	-1.5
1,307,730	-		GFF1278	0.74	-1.0
1,307,730	-		GFF1278	0.74	+0.5
1,307,731	+		GFF1278	0.74	+0.2
1,307,732	+		GFF1278	0.74	+0.8
1,307,740	-		GFF1278	0.75	+1.0
1,307,740	-		GFF1278	0.75	-0.0
1,307,810	+		GFF1278	0.79	+0.5
1,307,813	-		GFF1278	0.79	+0.0
1,307,815	+		GFF1278	0.79	-2.1
1,307,817	+		GFF1278	0.79	+0.8
1,307,823	-		GFF1278	0.79	-0.2
1,307,843	+		GFF1278	0.81	-0.9
1,307,886	+		GFF1278	0.83	+0.5
1,307,887	-		GFF1278	0.83	+1.3
1,307,894	-		GFF1278	0.84	+0.1
1,307,930	-		GFF1278	0.86	-0.3
1,307,955	+		GFF1278	0.87	-0.7
1,307,975	+		GFF1278	0.88	-0.4
1,307,975	+		GFF1278	0.88	-1.1
1,307,975	+		GFF1278	0.88	+0.4
1,307,983	+		GFF1278	0.89	+0.2
1,307,983	-		GFF1278	0.89	-0.9
1,307,994	+		GFF1278	0.89	+0.3
1,308,026	-				-1.2
1,308,043	+				-0.6
1,308,046	+				-1.8
1,308,050	+				-0.0
1,308,051	-				-0.3
1,308,058	+				+0.7
1,308,065	+				-0.9
1,308,066	+				+1.1
1,308,066	+				-0.8
1,308,066	+				-1.8
1,308,066	+				-0.4
1,308,066	+				-2.5
1,308,071	+				-0.7
1,308,071	+				+0.6
1,308,073	-				-1.7
1,308,074	-				-0.2
1,308,074	-				-2.3
1,308,074	-				+0.4
1,308,079	-				-0.2
1,308,097	-				+0.2
1,308,099	+				+0.3
1,308,099	+				-0.4
1,308,130	+				+0.8
1,308,133	-				-1.6
1,308,138	+				-0.6
1,308,138	-				-3.0
1,308,146	+				+0.2
1,308,146	+				-1.8
1,308,151	+				-1.8
1,308,151	+				-0.9
1,308,152	+				-1.1
1,308,152	+				-0.3
1,308,159	-				+0.5
1,308,159	-				-1.1
1,308,159	-				-2.0
1,308,159	-				-1.0
1,308,159	-				+0.5
1,308,159	-				+0.6
1,308,159	-				-0.2
1,308,159	-				-0.6
1,308,164	-				+0.7
1,308,177	-				-0.2
1,308,202	+				-0.2
1,308,202	+				+0.7
1,308,210	-				-0.6
1,308,210	-				-0.3
1,308,228	+				+0.1
1,308,236	-				-1.1
1,308,255	-				-0.2
1,308,258	+				-0.2
1,308,282	-				+0.2
1,308,290	+		GFF1279	0.10	-0.0
1,308,306	+		GFF1279	0.11	-0.8
1,308,320	-		GFF1279	0.13	-1.0
1,308,349	-		GFF1279	0.15	-0.4
1,308,352	+		GFF1279	0.15	+0.3
1,308,361	-		GFF1279	0.16	-0.1
1,308,365	+		GFF1279	0.16	+0.1
1,308,365	+		GFF1279	0.16	-0.8
1,308,375	+		GFF1279	0.17	-0.0
1,308,375	+		GFF1279	0.17	-1.8
1,308,383	-		GFF1279	0.18	-0.7
1,308,383	-		GFF1279	0.18	-1.3
1,308,383	-		GFF1279	0.18	-2.7
1,308,402	+		GFF1279	0.20	-2.7
1,308,419	+		GFF1279	0.21	-0.9
1,308,419	+		GFF1279	0.21	-0.1
1,308,425	-		GFF1279	0.22	+0.7
1,308,425	-		GFF1279	0.22	+0.7
1,308,425	-		GFF1279	0.22	-0.2
1,308,440	+		GFF1279	0.23	-0.5
1,308,440	+		GFF1279	0.23	-0.7
1,308,448	-		GFF1279	0.24	+0.5
1,308,448	-		GFF1279	0.24	+0.0
1,308,448	-		GFF1279	0.24	-1.6
1,308,448	-		GFF1279	0.24	+0.1
1,308,448	-		GFF1279	0.24	-0.5
1,308,448	-		GFF1279	0.24	-1.0
1,308,469	-		GFF1279	0.25	-0.4
1,308,479	-		GFF1279	0.26	+0.0
1,308,497	+		GFF1279	0.28	+1.4
1,308,497	+		GFF1279	0.28	+1.0
1,308,497	+		GFF1279	0.28	-0.4
1,308,497	+		GFF1279	0.28	-0.2
1,308,505	-		GFF1279	0.28	-0.7
1,308,514	+		GFF1279	0.29	+0.8
1,308,522	-		GFF1279	0.30	+1.0
1,308,522	-		GFF1279	0.30	-0.3
1,308,522	-		GFF1279	0.30	-0.2
1,308,533	+		GFF1279	0.31	+0.4
1,308,541	-		GFF1279	0.31	+0.2
1,308,549	-		GFF1279	0.32	-0.3
1,308,581	+		GFF1279	0.35	+0.0
1,308,605	-		GFF1279	0.37	+0.5
1,308,606	+		GFF1279	0.37	+0.2
1,308,614	-		GFF1279	0.38	-1.8
1,308,614	-		GFF1279	0.38	-0.1
1,308,657	-		GFF1279	0.41	-0.2
1,308,657	-		GFF1279	0.41	-0.9
1,308,658	+		GFF1279	0.41	-0.0
1,308,666	-		GFF1279	0.42	-1.7
1,308,694	-		GFF1279	0.45	+0.4
1,308,702	+		GFF1279	0.45	-1.7
1,308,709	-		GFF1279	0.46	-0.7
1,308,710	-		GFF1279	0.46	-0.5
1,308,731	+		GFF1279	0.48	-2.1
1,308,731	+		GFF1279	0.48	+0.0
1,308,731	+		GFF1279	0.48	-0.7
1,308,731	+		GFF1279	0.48	-1.0
1,308,731	+		GFF1279	0.48	-0.2
1,308,739	-		GFF1279	0.48	+0.6
1,308,739	-		GFF1279	0.48	+0.0
1,308,753	+		GFF1279	0.50	-0.6
1,308,753	+		GFF1279	0.50	-1.1
1,308,759	+		GFF1279	0.50	-0.1
1,308,759	+		GFF1279	0.50	-0.1
1,308,761	-		GFF1279	0.50	+0.9
1,308,761	-		GFF1279	0.50	-0.2
1,308,763	+		GFF1279	0.50	-0.1
1,308,766	+		GFF1279	0.51	-0.2
1,308,767	-		GFF1279	0.51	+0.4
1,308,767	-		GFF1279	0.51	-0.1
1,308,774	-		GFF1279	0.51	+0.1
1,308,779	+		GFF1279	0.52	-0.0
1,308,779	+		GFF1279	0.52	+0.4
1,308,779	+		GFF1279	0.52	+1.4
1,308,779	+		GFF1279	0.52	-0.7
1,308,782	-		GFF1279	0.52	-0.3
1,308,784	+		GFF1279	0.52	+1.3
1,308,787	-		GFF1279	0.52	+0.3
1,308,789	+		GFF1279	0.53	+0.8
1,308,792	-		GFF1279	0.53	-0.4
1,308,797	-		GFF1279	0.53	-0.1
1,308,797	-		GFF1279	0.53	-0.1
1,308,797	-		GFF1279	0.53	+0.4
1,308,846	+		GFF1279	0.57	-0.2
1,308,897	+		GFF1279	0.62	-0.3
1,308,897	+		GFF1279	0.62	+0.1
1,308,897	+		GFF1279	0.62	-0.4
1,308,905	-		GFF1279	0.62	+1.0
1,308,912	+		GFF1279	0.63	+0.8
1,308,917	+		GFF1279	0.64	-1.0
1,308,917	+		GFF1279	0.64	-1.6
1,308,917	+		GFF1279	0.64	+0.5
1,308,922	+		GFF1279	0.64	-0.6
1,308,922	+		GFF1279	0.64	-2.1
1,308,922	+		GFF1279	0.64	-1.1
1,308,922	+		GFF1279	0.64	-0.5
1,308,922	+		GFF1279	0.64	-1.2
1,308,922	+		GFF1279	0.64	-0.3
1,308,927	+		GFF1279	0.64	-0.1
1,308,930	-		GFF1279	0.65	+1.4
1,308,930	-		GFF1279	0.65	+1.4
1,308,930	-		GFF1279	0.65	-1.0
1,308,935	-		GFF1279	0.65	+2.4
1,308,935	-		GFF1279	0.65	-2.7
1,308,935	-		GFF1279	0.65	+0.7
1,308,940	+		GFF1279	0.65	-3.1
1,308,954	+		GFF1279	0.67	-1.7
1,308,955	+		GFF1279	0.67	-1.0
1,308,958	-		GFF1279	0.67	+0.4
1,308,966	+		GFF1279	0.68	+1.0
1,308,966	+		GFF1279	0.68	-1.6
1,308,973	+		GFF1279	0.68	+1.3
1,309,009	+		GFF1279	0.71	-0.9
1,309,018	+		GFF1279	0.72	+1.3
1,309,018	-		GFF1279	0.72	-1.7
1,309,018	-		GFF1279	0.72	+1.3
1,309,029	+		GFF1279	0.73	-0.3
1,309,034	+		GFF1279	0.73	-1.2
1,309,042	-		GFF1279	0.74	+0.1
1,309,042	-		GFF1279	0.74	-0.0
1,309,042	-		GFF1279	0.74	-0.1
1,309,047	+		GFF1279	0.75	-0.5
1,309,081	-		GFF1279	0.77	+0.8
1,309,092	+		GFF1279	0.78	-1.6
1,309,092	+		GFF1279	0.78	+0.5
1,309,100	-		GFF1279	0.79	+0.8
1,309,110	+		GFF1279	0.80	+0.7
1,309,110	+		GFF1279	0.80	-0.4
1,309,118	-		GFF1279	0.81	-3.5
1,309,125	+		GFF1279	0.81	-1.1
1,309,128	-		GFF1279	0.82	-1.0
1,309,154	+		GFF1279	0.84	-0.9
1,309,175	+		GFF1279	0.86	-0.2
1,309,182	-		GFF1279	0.86	-0.9
1,309,221	-		GFF1279	0.89	+0.4
1,309,233	+				-0.6
1,309,248	-				+0.1
1,309,294	+				-0.0
1,309,294	+				-0.3
1,309,294	+				-1.1
1,309,294	+				+0.3
1,309,294	+				-0.0
1,309,294	+				-1.5
1,309,294	+				+0.2
1,309,294	+				-0.6
1,309,294	+				+0.1
1,309,294	+				-0.9
1,309,302	-				-0.3
1,309,302	-				+0.3
1,309,302	-				+0.3
1,309,302	-				+0.7
1,309,302	-				-0.2
1,309,302	-				-0.3
1,309,302	-				-0.6
1,309,302	-				+1.0
1,309,324	-				+0.3
1,309,354	+				-0.7
1,309,354	+				-0.0
1,309,354	+				-0.2
1,309,362	-				+0.5
1,309,362	-				-0.1
1,309,362	-				-0.7
1,309,362	-				+0.4
1,309,367	-				-0.2
1,309,372	+				-1.0
1,309,372	+				+0.7
1,309,380	-				-1.1
1,309,380	-				-0.2
1,309,380	-				-1.6
1,309,387	+				+0.6
1,309,412	-		GFF1280	0.15	-0.6
1,309,416	-		GFF1280	0.16	-0.4
1,309,444	+		GFF1280	0.22	-2.9
1,309,456	+		GFF1280	0.25	+1.0
1,309,463	+		GFF1280	0.26	+1.0
1,309,463	+		GFF1280	0.26	-1.2
1,309,463	+		GFF1280	0.26	-1.5
1,309,468	+		GFF1280	0.27	+0.0
1,309,471	-		GFF1280	0.28	+0.7
1,309,471	-		GFF1280	0.28	-0.6
1,309,471	-		GFF1280	0.28	-1.9
1,309,471	-		GFF1280	0.28	+1.2
1,309,471	-		GFF1280	0.28	-0.8
1,309,476	-		GFF1280	0.29	-0.9
1,309,520	-		GFF1280	0.39	-0.2
1,309,520	-		GFF1280	0.39	+0.4
1,309,530	+		GFF1280	0.41	+0.2
1,309,541	+		GFF1280	0.43	-1.5
1,309,549	-		GFF1280	0.45	+0.2
1,309,549	-		GFF1280	0.45	-0.9
1,309,553	+		GFF1280	0.46	+0.3
1,309,554	-		GFF1280	0.46	-0.5
1,309,560	-		GFF1280	0.47	-0.8
1,309,574	+		GFF1280	0.50	+0.4
1,309,588	+		GFF1280	0.54	-2.0
1,309,588	+		GFF1280	0.54	+1.2
1,309,588	+		GFF1280	0.54	-2.2
1,309,588	-		GFF1280	0.54	-1.6
1,309,598	-		GFF1280	0.56	+0.5
1,309,637	-		GFF1280	0.64	-1.3
1,309,639	+		GFF1280	0.65	-0.0
1,309,640	+		GFF1280	0.65	-0.8
1,309,694	+		GFF1280	0.77	-1.8
1,309,714	+		GFF1280	0.81	+0.5
1,309,715	-		GFF1280	0.81	+0.1
1,309,745	-		GFF1280	0.88	+0.1
1,309,745	-		GFF1280	0.88	-1.9
1,309,746	+		GFF1280	0.88	-0.5
1,309,747	-		GFF1280	0.88	+1.2
1,309,763	+				+0.2
1,309,773	+				+0.3
1,309,786	+				-2.1
1,309,794	-				+0.9
1,309,802	-				+0.3
1,309,802	-				+0.5
1,309,802	-				+1.6
1,309,804	+				-0.0
1,309,812	-				-0.9
1,309,850	-				-1.4
1,309,873	+				+1.5
1,309,875	+				+0.8
1,309,879	+				+0.7
1,309,881	-				+0.9
1,309,885	+				+0.5
1,309,891	+				-1.5
1,309,894	-				+0.4
1,309,937	-				-2.6
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