Strain Fitness in Sphingobium sp. HT1-2 around GFF126

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF125 and GFF126 are separated by 22 nucleotidesGFF126 and GFF127 are separated by 106 nucleotides GFF125 - TonB-dependent receptor, at 118,965 to 121,421 GFF125 GFF126 - hypothetical protein, at 121,444 to 121,560 GFF126 GFF127 - Transcriptional regulator, Xre family, at 121,667 to 123,082 GFF127 Position (kb) 121 122Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 120.446 kb on - strand, within GFF125at 120.446 kb on - strand, within GFF125at 120.453 kb on + strand, within GFF125at 120.453 kb on + strand, within GFF125at 120.460 kb on + strand, within GFF125at 120.461 kb on - strand, within GFF125at 120.469 kb on + strand, within GFF125at 120.477 kb on - strand, within GFF125at 120.479 kb on + strand, within GFF125at 120.479 kb on + strand, within GFF125at 120.479 kb on + strand, within GFF125at 120.479 kb on + strand, within GFF125at 120.482 kb on - strand, within GFF125at 120.486 kb on - strand, within GFF125at 120.516 kb on + strand, within GFF125at 120.522 kb on + strand, within GFF125at 120.532 kb on - strand, within GFF125at 120.534 kb on + strand, within GFF125at 120.534 kb on + strand, within GFF125at 120.541 kb on + strand, within GFF125at 120.542 kb on - strand, within GFF125at 120.561 kb on - strand, within GFF125at 120.587 kb on - strand, within GFF125at 120.598 kb on - strand, within GFF125at 120.602 kb on - strand, within GFF125at 120.602 kb on - strand, within GFF125at 120.609 kb on + strand, within GFF125at 120.609 kb on + strand, within GFF125at 120.609 kb on + strand, within GFF125at 120.609 kb on + strand, within GFF125at 120.609 kb on + strand, within GFF125at 120.610 kb on + strand, within GFF125at 120.613 kb on - strand, within GFF125at 120.617 kb on - strand, within GFF125at 120.617 kb on - strand, within GFF125at 120.617 kb on - strand, within GFF125at 120.617 kb on - strand, within GFF125at 120.617 kb on - strand, within GFF125at 120.617 kb on - strand, within GFF125at 120.618 kb on - strand, within GFF125at 120.618 kb on - strand, within GFF125at 120.631 kb on + strand, within GFF125at 120.631 kb on - strand, within GFF125at 120.631 kb on - strand, within GFF125at 120.639 kb on - strand, within GFF125at 120.639 kb on - strand, within GFF125at 120.652 kb on - strand, within GFF125at 120.652 kb on - strand, within GFF125at 120.741 kb on + strand, within GFF125at 120.763 kb on - strand, within GFF125at 120.770 kb on + strand, within GFF125at 120.772 kb on + strand, within GFF125at 120.777 kb on + strand, within GFF125at 120.777 kb on + strand, within GFF125at 120.798 kb on - strand, within GFF125at 120.799 kb on + strand, within GFF125at 120.799 kb on + strand, within GFF125at 120.799 kb on + strand, within GFF125at 120.807 kb on - strand, within GFF125at 120.807 kb on - strand, within GFF125at 120.813 kb on + strand, within GFF125at 120.814 kb on + strand, within GFF125at 120.814 kb on + strand, within GFF125at 120.814 kb on + strand, within GFF125at 120.814 kb on + strand, within GFF125at 120.814 kb on + strand, within GFF125at 120.814 kb on + strand, within GFF125at 120.822 kb on - strand, within GFF125at 120.822 kb on - strand, within GFF125at 120.884 kb on + strand, within GFF125at 120.884 kb on + strand, within GFF125at 120.889 kb on + strand, within GFF125at 120.892 kb on - strand, within GFF125at 120.892 kb on - strand, within GFF125at 120.894 kb on + strand, within GFF125at 120.894 kb on + strand, within GFF125at 120.906 kb on + strand, within GFF125at 120.911 kb on + strand, within GFF125at 120.911 kb on + strand, within GFF125at 120.914 kb on - strand, within GFF125at 120.914 kb on - strand, within GFF125at 120.933 kb on + strand, within GFF125at 120.954 kb on + strand, within GFF125at 120.972 kb on + strand, within GFF125at 120.972 kb on + strand, within GFF125at 120.980 kb on - strand, within GFF125at 120.981 kb on + strand, within GFF125at 120.990 kb on - strand, within GFF125at 120.990 kb on - strand, within GFF125at 120.995 kb on - strand, within GFF125at 120.995 kb on - strand, within GFF125at 121.034 kb on + strand, within GFF125at 121.039 kb on + strand, within GFF125at 121.039 kb on + strand, within GFF125at 121.039 kb on + strand, within GFF125at 121.039 kb on - strand, within GFF125at 121.042 kb on - strand, within GFF125at 121.046 kb on + strand, within GFF125at 121.046 kb on + strand, within GFF125at 121.054 kb on - strand, within GFF125at 121.054 kb on - strand, within GFF125at 121.054 kb on - strand, within GFF125at 121.091 kb on + strand, within GFF125at 121.105 kb on + strand, within GFF125at 121.108 kb on - strand, within GFF125at 121.121 kb on + strand, within GFF125at 121.121 kb on + strand, within GFF125at 121.143 kb on + strand, within GFF125at 121.161 kb on + strand, within GFF125at 121.166 kb on + strand, within GFF125at 121.184 kb on + strandat 121.216 kb on - strandat 121.216 kb on - strandat 121.243 kb on + strandat 121.243 kb on + strandat 121.243 kb on + strandat 121.243 kb on + strandat 121.243 kb on + strandat 121.249 kb on + strandat 121.249 kb on + strandat 121.249 kb on + strandat 121.251 kb on - strandat 121.251 kb on - strandat 121.251 kb on - strandat 121.251 kb on - strandat 121.251 kb on - strandat 121.257 kb on - strandat 121.257 kb on - strandat 121.257 kb on - strandat 121.257 kb on - strandat 121.280 kb on - strandat 121.290 kb on + strandat 121.301 kb on - strandat 121.317 kb on - strandat 121.324 kb on - strandat 121.326 kb on + strandat 121.363 kb on - strandat 121.378 kb on + strandat 121.381 kb on + strandat 121.381 kb on + strandat 121.381 kb on + strandat 121.381 kb on + strandat 121.389 kb on - strandat 121.391 kb on + strandat 121.399 kb on - strandat 121.426 kb on - strandat 121.433 kb on - strandat 121.449 kb on + strandat 121.460 kb on + strand, within GFF126at 121.486 kb on + strand, within GFF126at 121.486 kb on + strand, within GFF126at 121.486 kb on + strand, within GFF126at 121.486 kb on + strand, within GFF126at 121.486 kb on + strand, within GFF126at 121.491 kb on + strand, within GFF126at 121.494 kb on + strand, within GFF126at 121.494 kb on - strand, within GFF126at 121.494 kb on - strand, within GFF126at 121.494 kb on - strand, within GFF126at 121.557 kb on - strandat 121.557 kb on - strandat 121.682 kb on - strandat 121.708 kb on - strandat 121.747 kb on + strandat 121.747 kb on + strandat 121.747 kb on + strandat 121.754 kb on + strandat 121.754 kb on + strandat 121.754 kb on + strandat 121.754 kb on + strandat 121.755 kb on - strandat 121.762 kb on - strandat 121.762 kb on - strandat 121.762 kb on - strandat 121.762 kb on - strandat 121.762 kb on - strandat 121.762 kb on - strandat 121.762 kb on - strandat 121.762 kb on - strandat 121.767 kb on - strandat 121.767 kb on - strandat 121.771 kb on + strandat 121.772 kb on - strandat 121.824 kb on - strand, within GFF127at 121.824 kb on - strand, within GFF127at 121.865 kb on + strand, within GFF127at 121.865 kb on + strand, within GFF127at 121.865 kb on + strand, within GFF127at 121.865 kb on + strand, within GFF127at 121.865 kb on + strand, within GFF127at 121.865 kb on + strand, within GFF127at 121.865 kb on + strand, within GFF127at 121.868 kb on - strand, within GFF127at 121.870 kb on + strand, within GFF127at 121.873 kb on - strand, within GFF127at 121.873 kb on - strand, within GFF127at 121.873 kb on - strand, within GFF127at 121.873 kb on - strand, within GFF127at 121.873 kb on - strand, within GFF127at 121.873 kb on - strand, within GFF127at 121.873 kb on - strand, within GFF127at 121.873 kb on - strand, within GFF127at 121.873 kb on - strand, within GFF127at 121.893 kb on + strand, within GFF127at 121.913 kb on + strand, within GFF127at 121.922 kb on - strand, within GFF127at 121.922 kb on - strand, within GFF127at 121.934 kb on + strand, within GFF127at 121.948 kb on - strand, within GFF127at 121.961 kb on + strand, within GFF127at 121.965 kb on + strand, within GFF127at 122.006 kb on - strand, within GFF127at 122.015 kb on + strand, within GFF127at 122.021 kb on - strand, within GFF127at 122.023 kb on - strand, within GFF127at 122.049 kb on + strand, within GFF127at 122.064 kb on + strand, within GFF127at 122.072 kb on - strand, within GFF127at 122.105 kb on + strand, within GFF127at 122.126 kb on + strand, within GFF127at 122.131 kb on + strand, within GFF127at 122.131 kb on + strand, within GFF127at 122.131 kb on + strand, within GFF127at 122.131 kb on + strand, within GFF127at 122.131 kb on + strand, within GFF127at 122.131 kb on + strand, within GFF127at 122.139 kb on - strand, within GFF127at 122.139 kb on - strand, within GFF127at 122.163 kb on - strand, within GFF127at 122.163 kb on - strand, within GFF127at 122.163 kb on - strand, within GFF127at 122.168 kb on - strand, within GFF127at 122.168 kb on - strand, within GFF127at 122.178 kb on - strand, within GFF127at 122.178 kb on - strand, within GFF127at 122.190 kb on - strand, within GFF127at 122.198 kb on - strand, within GFF127at 122.198 kb on - strand, within GFF127at 122.198 kb on - strand, within GFF127at 122.198 kb on - strand, within GFF127at 122.212 kb on - strand, within GFF127at 122.241 kb on - strand, within GFF127at 122.246 kb on + strand, within GFF127at 122.247 kb on + strand, within GFF127at 122.253 kb on + strand, within GFF127at 122.255 kb on + strand, within GFF127at 122.255 kb on + strand, within GFF127at 122.261 kb on - strand, within GFF127at 122.268 kb on - strand, within GFF127at 122.295 kb on - strand, within GFF127at 122.310 kb on + strand, within GFF127at 122.313 kb on - strand, within GFF127at 122.313 kb on - strand, within GFF127at 122.313 kb on - strand, within GFF127at 122.324 kb on - strand, within GFF127at 122.328 kb on - strand, within GFF127at 122.331 kb on + strand, within GFF127at 122.331 kb on + strand, within GFF127at 122.331 kb on + strand, within GFF127at 122.334 kb on - strand, within GFF127at 122.341 kb on + strand, within GFF127at 122.348 kb on + strand, within GFF127at 122.364 kb on - strand, within GFF127at 122.373 kb on - strand, within GFF127at 122.373 kb on - strand, within GFF127at 122.388 kb on - strand, within GFF127at 122.391 kb on + strand, within GFF127at 122.391 kb on + strand, within GFF127at 122.451 kb on - strand, within GFF127at 122.471 kb on + strand, within GFF127at 122.495 kb on + strand, within GFF127at 122.523 kb on + strand, within GFF127at 122.523 kb on + strand, within GFF127at 122.541 kb on - strand, within GFF127at 122.551 kb on - strand, within GFF127at 122.560 kb on + strand, within GFF127

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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120,446 - GFF125 0.60 -0.0
120,446 - GFF125 0.60 -1.1
120,453 + GFF125 0.61 +0.3
120,453 + GFF125 0.61 -0.4
120,460 + GFF125 0.61 -1.3
120,461 - GFF125 0.61 -0.6
120,469 + GFF125 0.61 -1.3
120,477 - GFF125 0.62 -0.1
120,479 + GFF125 0.62 -0.8
120,479 + GFF125 0.62 +0.1
120,479 + GFF125 0.62 -1.3
120,479 + GFF125 0.62 -1.4
120,482 - GFF125 0.62 -0.3
120,486 - GFF125 0.62 -0.9
120,516 + GFF125 0.63 +0.5
120,522 + GFF125 0.63 +0.4
120,532 - GFF125 0.64 +0.5
120,534 + GFF125 0.64 -0.8
120,534 + GFF125 0.64 -1.3
120,541 + GFF125 0.64 -1.9
120,542 - GFF125 0.64 +0.8
120,561 - GFF125 0.65 -3.4
120,587 - GFF125 0.66 +0.0
120,598 - GFF125 0.66 -2.2
120,602 - GFF125 0.67 -0.3
120,602 - GFF125 0.67 -1.3
120,609 + GFF125 0.67 -0.2
120,609 + GFF125 0.67 -1.6
120,609 + GFF125 0.67 -0.1
120,609 + GFF125 0.67 +0.2
120,609 + GFF125 0.67 +1.2
120,610 + GFF125 0.67 +0.7
120,613 - GFF125 0.67 -1.1
120,617 - GFF125 0.67 -1.4
120,617 - GFF125 0.67 -1.1
120,617 - GFF125 0.67 -1.4
120,617 - GFF125 0.67 -1.3
120,617 - GFF125 0.67 -1.1
120,617 - GFF125 0.67 -1.3
120,618 - GFF125 0.67 -0.2
120,618 - GFF125 0.67 -1.4
120,631 + GFF125 0.68 +0.4
120,631 - GFF125 0.68 -1.4
120,631 - GFF125 0.68 -0.3
120,639 - GFF125 0.68 -1.5
120,639 - GFF125 0.68 -1.5
120,652 - GFF125 0.69 -2.3
120,652 - GFF125 0.69 -0.9
120,741 + GFF125 0.72 -1.2
120,763 - GFF125 0.73 -1.1
120,770 + GFF125 0.73 -1.1
120,772 + GFF125 0.74 -0.3
120,777 + GFF125 0.74 -1.0
120,777 + GFF125 0.74 -1.4
120,798 - GFF125 0.75 +0.2
120,799 + GFF125 0.75 -3.0
120,799 + GFF125 0.75 -1.3
120,799 + GFF125 0.75 +0.2
120,807 - GFF125 0.75 -0.7
120,807 - GFF125 0.75 -0.9
120,813 + GFF125 0.75 -0.8
120,814 + GFF125 0.75 -1.3
120,814 + GFF125 0.75 -0.6
120,814 + GFF125 0.75 +0.9
120,814 + GFF125 0.75 -1.0
120,814 + GFF125 0.75 -0.4
120,814 + GFF125 0.75 +1.8
120,822 - GFF125 0.76 +0.6
120,822 - GFF125 0.76 -0.2
120,884 + GFF125 0.78 +0.4
120,884 + GFF125 0.78 -0.8
120,889 + GFF125 0.78 +0.5
120,892 - GFF125 0.78 -1.5
120,892 - GFF125 0.78 +0.2
120,894 + GFF125 0.79 -1.0
120,894 + GFF125 0.79 -0.2
120,906 + GFF125 0.79 -0.7
120,911 + GFF125 0.79 -1.7
120,911 + GFF125 0.79 -1.0
120,914 - GFF125 0.79 -0.4
120,914 - GFF125 0.79 +2.1
120,933 + GFF125 0.80 +0.7
120,954 + GFF125 0.81 -0.1
120,972 + GFF125 0.82 -0.5
120,972 + GFF125 0.82 -0.1
120,980 - GFF125 0.82 +0.1
120,981 + GFF125 0.82 -0.4
120,990 - GFF125 0.82 -2.2
120,990 - GFF125 0.82 -1.8
120,995 - GFF125 0.83 -1.2
120,995 - GFF125 0.83 -2.0
121,034 + GFF125 0.84 +0.3
121,039 + GFF125 0.84 -1.3
121,039 + GFF125 0.84 +0.1
121,039 + GFF125 0.84 -0.5
121,039 - GFF125 0.84 +0.5
121,042 - GFF125 0.85 -0.0
121,046 + GFF125 0.85 -0.1
121,046 + GFF125 0.85 +1.1
121,054 - GFF125 0.85 +1.5
121,054 - GFF125 0.85 -1.0
121,054 - GFF125 0.85 +0.0
121,091 + GFF125 0.87 +1.1
121,105 + GFF125 0.87 +0.2
121,108 - GFF125 0.87 -1.6
121,121 + GFF125 0.88 -0.3
121,121 + GFF125 0.88 -0.9
121,143 + GFF125 0.89 +0.8
121,161 + GFF125 0.89 -0.5
121,166 + GFF125 0.90 -0.6
121,184 + +0.9
121,216 - -0.8
121,216 - -1.5
121,243 + -0.0
121,243 + -0.5
121,243 + -0.5
121,243 + -2.4
121,243 + -0.9
121,249 + +0.4
121,249 + +0.6
121,249 + +0.3
121,251 - -0.4
121,251 - +1.0
121,251 - -0.7
121,251 - -2.3
121,251 - -0.2
121,257 - -1.7
121,257 - -1.0
121,257 - -2.5
121,257 - -0.1
121,280 - -2.2
121,290 + +0.7
121,301 - +1.6
121,317 - -0.4
121,324 - +1.1
121,326 + -0.9
121,363 - -0.6
121,378 + -0.1
121,381 + +0.6
121,381 + -0.0
121,381 + -0.3
121,381 + -0.1
121,389 - -0.4
121,391 + -1.3
121,399 - +0.3
121,426 - -1.8
121,433 - -0.1
121,449 + +0.7
121,460 + GFF126 0.14 -0.6
121,486 + GFF126 0.36 -2.5
121,486 + GFF126 0.36 +0.2
121,486 + GFF126 0.36 +0.4
121,486 + GFF126 0.36 -1.0
121,486 + GFF126 0.36 -1.5
121,491 + GFF126 0.40 -0.9
121,494 + GFF126 0.43 -1.0
121,494 - GFF126 0.43 +0.8
121,494 - GFF126 0.43 +0.3
121,494 - GFF126 0.43 -0.5
121,557 - -0.7
121,557 - -0.4
121,682 - +0.3
121,708 - +0.7
121,747 + -0.6
121,747 + -2.7
121,747 + -1.9
121,754 + -1.4
121,754 + -2.0
121,754 + -1.2
121,754 + -1.5
121,755 - -0.4
121,762 - -0.0
121,762 - +0.1
121,762 - -0.6
121,762 - -0.5
121,762 - -0.6
121,762 - -0.6
121,762 - -0.2
121,762 - +0.1
121,767 - +0.2
121,767 - -0.5
121,771 + -0.3
121,772 - -0.6
121,824 - GFF127 0.11 +0.2
121,824 - GFF127 0.11 -0.0
121,865 + GFF127 0.14 +0.9
121,865 + GFF127 0.14 -0.7
121,865 + GFF127 0.14 -2.3
121,865 + GFF127 0.14 -2.7
121,865 + GFF127 0.14 +1.1
121,865 + GFF127 0.14 -1.1
121,865 + GFF127 0.14 +1.3
121,868 - GFF127 0.14 +1.2
121,870 + GFF127 0.14 -0.4
121,873 - GFF127 0.15 -0.6
121,873 - GFF127 0.15 -0.5
121,873 - GFF127 0.15 +0.7
121,873 - GFF127 0.15 -0.6
121,873 - GFF127 0.15 -0.7
121,873 - GFF127 0.15 +0.2
121,873 - GFF127 0.15 -1.3
121,873 - GFF127 0.15 +0.6
121,873 - GFF127 0.15 +1.0
121,893 + GFF127 0.16 -1.8
121,913 + GFF127 0.17 -0.1
121,922 - GFF127 0.18 +0.4
121,922 - GFF127 0.18 -2.8
121,934 + GFF127 0.19 +0.3
121,948 - GFF127 0.20 -0.1
121,961 + GFF127 0.21 -1.2
121,965 + GFF127 0.21 -1.9
122,006 - GFF127 0.24 -0.4
122,015 + GFF127 0.25 -0.4
122,021 - GFF127 0.25 -1.1
122,023 - GFF127 0.25 +0.6
122,049 + GFF127 0.27 -2.5
122,064 + GFF127 0.28 -1.1
122,072 - GFF127 0.29 -0.4
122,105 + GFF127 0.31 -0.2
122,126 + GFF127 0.32 -1.5
122,131 + GFF127 0.33 -0.2
122,131 + GFF127 0.33 -0.1
122,131 + GFF127 0.33 +0.7
122,131 + GFF127 0.33 -0.1
122,131 + GFF127 0.33 -3.1
122,131 + GFF127 0.33 +0.6
122,139 - GFF127 0.33 +0.6
122,139 - GFF127 0.33 +0.3
122,163 - GFF127 0.35 +1.4
122,163 - GFF127 0.35 -1.3
122,163 - GFF127 0.35 +1.4
122,168 - GFF127 0.35 +0.3
122,168 - GFF127 0.35 -0.4
122,178 - GFF127 0.36 -1.3
122,178 - GFF127 0.36 -1.0
122,190 - GFF127 0.37 +1.2
122,198 - GFF127 0.38 -0.9
122,198 - GFF127 0.38 -0.7
122,198 - GFF127 0.38 -0.2
122,198 - GFF127 0.38 +0.1
122,212 - GFF127 0.38 +0.8
122,241 - GFF127 0.41 +0.4
122,246 + GFF127 0.41 +0.3
122,247 + GFF127 0.41 +0.8
122,253 + GFF127 0.41 -0.6
122,255 + GFF127 0.42 +0.2
122,255 + GFF127 0.42 -1.0
122,261 - GFF127 0.42 -0.8
122,268 - GFF127 0.42 -0.5
122,295 - GFF127 0.44 +0.1
122,310 + GFF127 0.45 -1.4
122,313 - GFF127 0.46 -0.9
122,313 - GFF127 0.46 +1.0
122,313 - GFF127 0.46 +0.4
122,324 - GFF127 0.46 -1.0
122,328 - GFF127 0.47 -1.4
122,331 + GFF127 0.47 -0.6
122,331 + GFF127 0.47 -1.6
122,331 + GFF127 0.47 -0.6
122,334 - GFF127 0.47 +0.8
122,341 + GFF127 0.48 -0.1
122,348 + GFF127 0.48 -1.4
122,364 - GFF127 0.49 -1.8
122,373 - GFF127 0.50 -1.9
122,373 - GFF127 0.50 +0.7
122,388 - GFF127 0.51 +1.6
122,391 + GFF127 0.51 -1.4
122,391 + GFF127 0.51 -0.7
122,451 - GFF127 0.55 +0.3
122,471 + GFF127 0.57 -0.9
122,495 + GFF127 0.58 -0.7
122,523 + GFF127 0.60 +0.3
122,523 + GFF127 0.60 +2.3
122,541 - GFF127 0.62 -0.0
122,551 - GFF127 0.62 -0.1
122,560 + GFF127 0.63 -0.4

Or see this region's nucleotide sequence