Strain Fitness in Sphingobium sp. HT1-2 around GFF1206

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,221,915	-		GFF1205	0.47	-0.7
1,221,915	-		GFF1205	0.47	-0.4
1,221,915	-		GFF1205	0.47	+0.6
1,221,935	+		GFF1205	0.49	-1.3
1,221,935	+		GFF1205	0.49	-1.0
1,221,938	-		GFF1205	0.49	+0.2
1,221,940	+		GFF1205	0.49	+0.9
1,221,940	+		GFF1205	0.49	-0.6
1,221,940	+		GFF1205	0.49	-1.5
1,221,943	-		GFF1205	0.49	-1.8
1,221,944	+		GFF1205	0.49	+0.0
1,221,969	-		GFF1205	0.51	-0.1
1,222,003	+		GFF1205	0.53	-0.6
1,222,022	+		GFF1205	0.54	-0.2
1,222,044	+		GFF1205	0.56	-2.8
1,222,044	+		GFF1205	0.56	-0.9
1,222,044	+		GFF1205	0.56	-0.4
1,222,044	+		GFF1205	0.56	-1.3
1,222,044	+		GFF1205	0.56	-0.2
1,222,044	+		GFF1205	0.56	+0.0
1,222,045	-		GFF1205	0.56	+0.2
1,222,052	-		GFF1205	0.56	-1.2
1,222,052	-		GFF1205	0.56	+0.3
1,222,052	-		GFF1205	0.56	-1.5
1,222,052	-		GFF1205	0.56	+0.1
1,222,052	-		GFF1205	0.56	-1.4
1,222,056	+		GFF1205	0.56	-1.2
1,222,064	-		GFF1205	0.57	-0.3
1,222,075	+		GFF1205	0.58	+0.8
1,222,075	+		GFF1205	0.58	-0.4
1,222,075	+		GFF1205	0.58	-1.9
1,222,075	+		GFF1205	0.58	+0.2
1,222,075	+		GFF1205	0.58	+0.8
1,222,075	+		GFF1205	0.58	+0.5
1,222,075	+		GFF1205	0.58	+0.3
1,222,075	+		GFF1205	0.58	-0.4
1,222,075	+		GFF1205	0.58	+0.6
1,222,075	+		GFF1205	0.58	-0.3
1,222,075	+		GFF1205	0.58	+0.3
1,222,075	+		GFF1205	0.58	-1.7
1,222,075	+		GFF1205	0.58	-1.3
1,222,075	+		GFF1205	0.58	-1.2
1,222,075	+		GFF1205	0.58	-2.5
1,222,075	+		GFF1205	0.58	+0.0
1,222,075	+		GFF1205	0.58	-1.6
1,222,075	+		GFF1205	0.58	-0.2
1,222,075	+		GFF1205	0.58	+0.3
1,222,082	+		GFF1205	0.58	+1.2
1,222,083	-		GFF1205	0.58	+0.1
1,222,083	-		GFF1205	0.58	+1.2
1,222,083	-		GFF1205	0.58	+0.1
1,222,083	-		GFF1205	0.58	+1.2
1,222,083	-		GFF1205	0.58	-0.1
1,222,083	-		GFF1205	0.58	-1.5
1,222,083	-		GFF1205	0.58	-1.5
1,222,083	-		GFF1205	0.58	-0.4
1,222,083	-		GFF1205	0.58	-2.6
1,222,083	-		GFF1205	0.58	-1.0
1,222,083	-		GFF1205	0.58	+0.6
1,222,083	-		GFF1205	0.58	+0.4
1,222,083	-		GFF1205	0.58	+1.0
1,222,137	+		GFF1205	0.62	-1.3
1,222,137	+		GFF1205	0.62	-0.2
1,222,137	+		GFF1205	0.62	+0.9
1,222,137	+		GFF1205	0.62	+1.0
1,222,137	+		GFF1205	0.62	+2.2
1,222,137	+		GFF1205	0.62	-1.3
1,222,145	-		GFF1205	0.62	-1.8
1,222,145	-		GFF1205	0.62	-1.0
1,222,145	-		GFF1205	0.62	+1.0
1,222,145	-		GFF1205	0.62	+0.1
1,222,147	+		GFF1205	0.62	+1.3
1,222,147	+		GFF1205	0.62	-0.7
1,222,147	+		GFF1205	0.62	+1.0
1,222,147	+		GFF1205	0.62	+0.8
1,222,147	+		GFF1205	0.62	+0.3
1,222,147	+		GFF1205	0.62	+0.1
1,222,147	+		GFF1205	0.62	-0.5
1,222,147	+		GFF1205	0.62	-0.1
1,222,147	+		GFF1205	0.62	+0.9
1,222,147	+		GFF1205	0.62	-1.0
1,222,147	+		GFF1205	0.62	-1.4
1,222,155	+		GFF1205	0.63	+0.3
1,222,155	-		GFF1205	0.63	-0.7
1,222,155	-		GFF1205	0.63	-1.3
1,222,155	-		GFF1205	0.63	-2.4
1,222,155	-		GFF1205	0.63	+0.3
1,222,163	+		GFF1205	0.63	+0.2
1,222,163	+		GFF1205	0.63	-0.9
1,222,175	-		GFF1205	0.64	-0.1
1,222,205	+		GFF1205	0.66	-1.0
1,222,213	-		GFF1205	0.66	-0.9
1,222,213	-		GFF1205	0.66	-2.7
1,222,266	+		GFF1205	0.70	-0.7
1,222,268	+		GFF1205	0.70	-0.0
1,222,268	+		GFF1205	0.70	-0.2
1,222,276	-		GFF1205	0.70	+0.0
1,222,276	-		GFF1205	0.70	-0.6
1,222,276	-		GFF1205	0.70	-0.0
1,222,311	-		GFF1205	0.73	-0.7
1,222,312	-		GFF1205	0.73	+1.0
1,222,312	-		GFF1205	0.73	+1.1
1,222,344	+		GFF1205	0.75	-0.7
1,222,344	+		GFF1205	0.75	+0.1
1,222,352	-		GFF1205	0.75	-0.7
1,222,360	-		GFF1205	0.76	-1.0
1,222,366	+		GFF1205	0.76	+0.1
1,222,384	-		GFF1205	0.77	+0.8
1,222,411	+		GFF1205	0.79	-1.4
1,222,421	+		GFF1205	0.80	-0.3
1,222,424	-		GFF1205	0.80	-2.6
1,222,430	-		GFF1205	0.80	+0.2
1,222,470	-		GFF1205	0.83	-0.6
1,222,474	+		GFF1205	0.83	-0.7
1,222,484	+		GFF1205	0.84	-2.3
1,222,484	+		GFF1205	0.84	+0.4
1,222,485	+		GFF1205	0.84	-2.2
1,222,490	+		GFF1205	0.84	-1.8
1,222,490	+		GFF1205	0.84	+0.3
1,222,498	-		GFF1205	0.85	-0.4
1,222,498	-		GFF1205	0.85	-0.5
1,222,520	-		GFF1205	0.86	-0.3
1,222,545	+		GFF1205	0.88	+0.5
1,222,553	-		GFF1205	0.88	-2.2
1,222,581	+				-0.7
1,222,588	+				+1.8
1,222,601	-				-0.8
1,222,647	+				-1.5
1,222,661	+				+0.2
1,222,669	-				+0.3
1,222,681	+				+0.3
1,222,689	-				-1.0
1,222,691	+				-1.7
1,222,703	+				-0.3
1,222,703	+				-0.4
1,222,703	-				-1.5
1,222,710	-				+0.3
1,222,711	-				+0.3
1,222,712	+				-0.6
1,222,735	-				-1.0
1,222,742	-				-0.2
1,222,760	+				+0.0
1,222,773	-				-1.0
1,222,773	-				-0.5
1,222,778	+				+0.4
1,222,778	+				+0.6
1,222,778	+				-1.7
1,222,781	-				+0.3
1,222,781	-				+0.2
1,222,786	-				+0.1
1,222,790	-				+1.0
1,222,796	-				+0.6
1,222,796	-				-0.8
1,222,814	+				-0.4
1,222,814	+				-1.5
1,222,830	-				-0.2
1,222,830	-				+0.1
1,222,830	-				-1.5
1,222,842	+				-0.8
1,222,850	-				-2.2
1,222,852	-				-0.4
1,222,859	+				-0.5
1,222,864	+				+0.0
1,222,872	-				+1.0
1,222,929	-				-0.2
1,223,035	+				+0.3
1,223,043	-				+0.4
1,223,059	-				+0.2
1,223,069	+		GFF1206	0.10	-0.4
1,223,069	+		GFF1206	0.10	+0.2
1,223,069	+		GFF1206	0.10	-3.3
1,223,069	+		GFF1206	0.10	-1.5
1,223,069	+		GFF1206	0.10	-0.3
1,223,079	+		GFF1206	0.11	-0.7
1,223,082	-		GFF1206	0.11	-0.0
1,223,087	-		GFF1206	0.11	+0.5
1,223,087	-		GFF1206	0.11	-0.4
1,223,113	+		GFF1206	0.13	-0.8
1,223,149	+		GFF1206	0.15	+0.2
1,223,149	+		GFF1206	0.15	-0.0
1,223,152	+		GFF1206	0.16	-0.6
1,223,190	+		GFF1206	0.18	+1.1
1,223,198	-		GFF1206	0.19	-1.4
1,223,209	-		GFF1206	0.19	-1.3
1,223,224	-		GFF1206	0.20	-0.4
1,223,224	-		GFF1206	0.20	-0.7
1,223,305	+		GFF1206	0.26	+0.3
1,223,305	+		GFF1206	0.26	+0.6
1,223,305	+		GFF1206	0.26	+0.4
1,223,305	+		GFF1206	0.26	-1.9
1,223,313	-		GFF1206	0.26	+0.4
1,223,313	-		GFF1206	0.26	+2.2
1,223,313	-		GFF1206	0.26	+1.1
1,223,313	-		GFF1206	0.26	+0.8
1,223,313	-		GFF1206	0.26	-0.4
1,223,313	-		GFF1206	0.26	+0.1
1,223,313	-		GFF1206	0.26	-2.3
1,223,324	+		GFF1206	0.27	-0.2
1,223,360	+		GFF1206	0.29	-1.1
1,223,360	+		GFF1206	0.29	+0.0
1,223,360	+		GFF1206	0.29	-1.3
1,223,360	+		GFF1206	0.29	-1.1
1,223,360	+		GFF1206	0.29	+0.9
1,223,360	+		GFF1206	0.29	-0.8
1,223,360	+		GFF1206	0.29	-1.0
1,223,360	+		GFF1206	0.29	+0.5
1,223,360	+		GFF1206	0.29	+0.1
1,223,365	+		GFF1206	0.29	+0.4
1,223,368	-		GFF1206	0.30	+0.5
1,223,368	-		GFF1206	0.30	-0.8
1,223,368	-		GFF1206	0.30	+1.7
1,223,368	-		GFF1206	0.30	-0.7
1,223,368	-		GFF1206	0.30	+1.4
1,223,370	+		GFF1206	0.30	+0.3
1,223,373	-		GFF1206	0.30	-0.4
1,223,373	-		GFF1206	0.30	-1.8
1,223,378	-		GFF1206	0.30	-0.9
1,223,378	-		GFF1206	0.30	+0.2
1,223,378	-		GFF1206	0.30	-0.2
1,223,385	+		GFF1206	0.31	-0.2
1,223,390	+		GFF1206	0.31	+0.0
1,223,407	+		GFF1206	0.32	-1.8
1,223,409	-		GFF1206	0.32	-0.2
1,223,415	-		GFF1206	0.33	+0.5
1,223,433	+		GFF1206	0.34	-1.2
1,223,441	-		GFF1206	0.34	+0.9
1,223,455	+		GFF1206	0.35	-1.7
1,223,459	-		GFF1206	0.36	-2.1
1,223,463	-		GFF1206	0.36	+0.9
1,223,483	+		GFF1206	0.37	+0.9
1,223,485	-		GFF1206	0.37	-2.8
1,223,488	+		GFF1206	0.37	-0.8
1,223,491	-		GFF1206	0.38	-0.2
1,223,542	+		GFF1206	0.41	-0.5
1,223,546	+		GFF1206	0.41	-1.2
1,223,554	-		GFF1206	0.42	+0.5
1,223,559	-		GFF1206	0.42	+0.4
1,223,577	+		GFF1206	0.43	-1.5
1,223,577	+		GFF1206	0.43	-1.2
1,223,577	+		GFF1206	0.43	-1.6
1,223,577	+		GFF1206	0.43	-1.4
1,223,577	+		GFF1206	0.43	+1.0
1,223,584	-		GFF1206	0.44	+1.0
1,223,584	-		GFF1206	0.44	-0.2
1,223,585	+		GFF1206	0.44	+0.2
1,223,585	+		GFF1206	0.44	+0.1
1,223,593	-		GFF1206	0.44	-0.3
1,223,600	+		GFF1206	0.45	-0.2
1,223,600	+		GFF1206	0.45	-0.1
1,223,613	-		GFF1206	0.46	-1.5
1,223,643	+		GFF1206	0.48	-0.7
1,223,671	-		GFF1206	0.49	+0.1
1,223,740	-		GFF1206	0.54	-1.0
1,223,762	+		GFF1206	0.55	-2.3
1,223,763	+		GFF1206	0.55	+0.5
1,223,786	+		GFF1206	0.57	-2.0
1,223,786	-		GFF1206	0.57	+1.4
1,223,794	+		GFF1206	0.57	+0.8
1,223,794	+		GFF1206	0.57	+0.7
1,223,794	+		GFF1206	0.57	-0.9
1,223,794	+		GFF1206	0.57	-0.2
1,223,794	+		GFF1206	0.57	+1.1
1,223,794	+		GFF1206	0.57	-1.4
1,223,802	-		GFF1206	0.58	-0.8
1,223,802	-		GFF1206	0.58	-0.7
1,223,802	-		GFF1206	0.58	-0.7
1,223,802	-		GFF1206	0.58	-0.9
1,223,802	-		GFF1206	0.58	-0.4
1,223,802	-		GFF1206	0.58	+0.7
1,223,802	-		GFF1206	0.58	+0.5
1,223,802	-		GFF1206	0.58	+0.1
1,223,808	-		GFF1206	0.58	+0.9
1,223,813	-		GFF1206	0.59	+0.2
1,223,825	-		GFF1206	0.59	+0.2
1,223,837	+		GFF1206	0.60	-0.7
1,223,845	-		GFF1206	0.61	-2.4
1,223,845	-		GFF1206	0.61	-0.2
1,223,845	-		GFF1206	0.61	-0.4
1,223,861	+		GFF1206	0.62	+1.3
1,223,861	+		GFF1206	0.62	-0.0
1,223,869	-		GFF1206	0.62	-0.6
1,223,869	-		GFF1206	0.62	+0.8
1,223,869	-		GFF1206	0.62	+1.4
1,223,889	-		GFF1206	0.64	-0.0
1,223,895	-		GFF1206	0.64	-0.0
1,223,895	-		GFF1206	0.64	+0.0
1,223,926	+		GFF1206	0.66	-0.1
1,223,947	+		GFF1206	0.67	-0.4
1,223,989	-		GFF1206	0.70	+0.2
1,223,991	-		GFF1206	0.70	+0.0
1,223,993	+		GFF1206	0.70	-0.3
1,224,003	+		GFF1206	0.71	-2.0
1,224,009	-		GFF1206	0.71	-0.7
1,224,009	-		GFF1206	0.71	-1.0
1,224,029	+		GFF1206	0.73	-0.2
1,224,029	+		GFF1206	0.73	-0.3
1,224,037	-		GFF1206	0.73	-0.1
1,224,059	+		GFF1206	0.75	+1.6
1,224,059	+		GFF1206	0.75	-0.3
1,224,059	+		GFF1206	0.75	-0.8
1,224,059	+		GFF1206	0.75	-0.5
1,224,059	+		GFF1206	0.75	+0.9
1,224,059	+		GFF1206	0.75	+0.1
1,224,064	+		GFF1206	0.75	-0.6
1,224,067	-		GFF1206	0.75	-0.7
1,224,067	-		GFF1206	0.75	-0.1
1,224,067	-		GFF1206	0.75	-0.0
1,224,067	-		GFF1206	0.75	-2.4
1,224,067	-		GFF1206	0.75	-0.4
1,224,072	-		GFF1206	0.75	-2.6
1,224,072	-		GFF1206	0.75	-0.6
1,224,072	-		GFF1206	0.75	-1.4
1,224,072	-		GFF1206	0.75	+0.2
1,224,072	-		GFF1206	0.75	-1.0
1,224,107	-		GFF1206	0.78	-0.1
1,224,107	-		GFF1206	0.78	+0.6
1,224,107	-		GFF1206	0.78	+0.9
1,224,119	+		GFF1206	0.78	+1.1
1,224,119	+		GFF1206	0.78	+1.3
1,224,127	-		GFF1206	0.79	+0.2
1,224,167	-		GFF1206	0.82	-0.0
1,224,168	-		GFF1206	0.82	+1.1
1,224,182	-		GFF1206	0.83	-1.5
1,224,194	+		GFF1206	0.83	-0.1
1,224,202	-		GFF1206	0.84	+0.4
1,224,202	-		GFF1206	0.84	+0.2
1,224,202	-		GFF1206	0.84	-1.4
1,224,207	-		GFF1206	0.84	+0.7
1,224,207	-		GFF1206	0.84	-2.7
1,224,237	+		GFF1206	0.86	-0.5
1,224,245	-		GFF1206	0.87	-2.7
1,224,247	+		GFF1206	0.87	-0.5
1,224,247	+		GFF1206	0.87	-0.2
1,224,249	+		GFF1206	0.87	+0.7
1,224,250	-		GFF1206	0.87	-0.8
1,224,255	-		GFF1206	0.87	+1.7
1,224,255	-		GFF1206	0.87	-0.1
1,224,259	+		GFF1206	0.88	-0.0
1,224,259	+		GFF1206	0.88	-0.9
1,224,260	+		GFF1206	0.88	-0.4
1,224,267	-		GFF1206	0.88	-1.3
1,224,267	-		GFF1206	0.88	-0.5
1,224,286	-		GFF1206	0.89	-0.9
1,224,286	-		GFF1206	0.89	-0.9
1,224,286	-		GFF1206	0.89	-1.2
1,224,322	+				+0.9
1,224,322	+				-1.4
1,224,322	+				-0.2
1,224,322	+				+0.2
1,224,322	+				+0.0
1,224,322	+				-0.8
1,224,322	+				-0.5
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1,224,330	-				+0.4
1,224,330	-				-1.3
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1,224,330	-				-1.7
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1,224,340	-				-1.3
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1,224,351	-				-2.4
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1,224,468	-				+0.5
1,224,470	-				-2.0
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1,224,528	+				+1.6
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1,224,602	-				+0.7
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1,225,428	-		GFF1207	0.25	-0.2
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