Strain Fitness in Sphingobium sp. HT1-2 around GFF1205

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,220,195	+		GFF1204	0.19	+0.6
1,220,198	-		GFF1204	0.19	-1.0
1,220,198	-		GFF1204	0.19	-0.9
1,220,201	+		GFF1204	0.19	+0.8
1,220,218	+		GFF1204	0.21	-3.3
1,220,218	+		GFF1204	0.21	+0.0
1,220,218	+		GFF1204	0.21	+0.6
1,220,226	-		GFF1204	0.21	+0.2
1,220,226	-		GFF1204	0.21	-0.3
1,220,226	-		GFF1204	0.21	+0.1
1,220,226	-		GFF1204	0.21	-0.8
1,220,235	+		GFF1204	0.22	-0.8
1,220,253	-		GFF1204	0.24	+0.6
1,220,315	-		GFF1204	0.30	+0.4
1,220,341	+		GFF1204	0.32	-2.0
1,220,341	+		GFF1204	0.32	-0.1
1,220,345	+		GFF1204	0.33	+0.2
1,220,345	+		GFF1204	0.33	+0.4
1,220,345	+		GFF1204	0.33	-0.8
1,220,345	+		GFF1204	0.33	-1.4
1,220,377	+		GFF1204	0.35	-2.8
1,220,377	+		GFF1204	0.35	-0.1
1,220,385	-		GFF1204	0.36	+0.5
1,220,385	-		GFF1204	0.36	-0.2
1,220,440	+		GFF1204	0.41	+0.9
1,220,443	-		GFF1204	0.42	-0.2
1,220,484	-		GFF1204	0.45	+0.4
1,220,500	+		GFF1204	0.47	-2.8
1,220,513	-		GFF1204	0.48	+0.6
1,220,513	-		GFF1204	0.48	+0.2
1,220,517	+		GFF1204	0.48	+0.1
1,220,525	-		GFF1204	0.49	+0.7
1,220,540	+		GFF1204	0.51	+0.2
1,220,589	-		GFF1204	0.55	-2.4
1,220,591	+		GFF1204	0.55	-1.3
1,220,591	+		GFF1204	0.55	-0.4
1,220,617	+		GFF1204	0.58	-1.4
1,220,644	+		GFF1204	0.60	-2.2
1,220,649	+		GFF1204	0.61	+0.7
1,220,684	+		GFF1204	0.64	-0.3
1,220,685	+		GFF1204	0.64	-0.8
1,220,686	-		GFF1204	0.64	+1.2
1,220,690	+		GFF1204	0.64	-0.5
1,220,690	-		GFF1204	0.64	+0.9
1,220,693	-		GFF1204	0.65	-1.7
1,220,695	+		GFF1204	0.65	-2.0
1,220,700	+		GFF1204	0.65	-0.3
1,220,708	-		GFF1204	0.66	-0.2
1,220,715	-		GFF1204	0.67	+0.2
1,220,747	+		GFF1204	0.70	+0.0
1,220,784	+		GFF1204	0.73	-0.5
1,220,854	+		GFF1204	0.80	-1.3
1,220,873	+		GFF1204	0.81	-0.6
1,220,883	-		GFF1204	0.82	-0.7
1,220,932	+		GFF1204	0.87	-0.1
1,220,932	+		GFF1204	0.87	-0.5
1,220,978	-				-0.1
1,220,979	+				-0.6
1,220,979	+				-0.5
1,220,980	+				+0.2
1,220,980	+				+1.8
1,220,980	+				-1.4
1,220,987	-				-1.3
1,220,987	-				-0.5
1,220,987	-				-0.5
1,220,987	-				-1.8
1,221,002	+				+0.4
1,221,002	+				-2.4
1,221,032	-				+0.7
1,221,085	+				-0.5
1,221,086	+				-0.3
1,221,086	+				-0.4
1,221,094	-				-1.2
1,221,176	-				+1.2
1,221,184	-				-0.6
1,221,235	-				-0.2
1,221,240	-				-0.0
1,221,277	+				-0.0
1,221,281	-				+0.6
1,221,291	-				-2.7
1,221,292	+				+0.8
1,221,313	+				+0.7
1,221,315	-				-0.0
1,221,333	-				+0.8
1,221,336	+		GFF1205	0.10	-0.9
1,221,342	+		GFF1205	0.10	+0.7
1,221,342	+		GFF1205	0.10	-0.3
1,221,350	-		GFF1205	0.11	+0.2
1,221,381	-		GFF1205	0.13	-0.3
1,221,384	+		GFF1205	0.13	-0.2
1,221,388	-		GFF1205	0.13	+0.0
1,221,408	-		GFF1205	0.15	-0.7
1,221,436	+		GFF1205	0.17	+0.8
1,221,436	+		GFF1205	0.17	-1.8
1,221,436	+		GFF1205	0.17	-1.0
1,221,436	+		GFF1205	0.17	+0.7
1,221,436	+		GFF1205	0.17	+0.0
1,221,436	+		GFF1205	0.17	-0.8
1,221,436	+		GFF1205	0.17	+0.6
1,221,436	+		GFF1205	0.17	-2.4
1,221,436	+		GFF1205	0.17	-0.1
1,221,444	-		GFF1205	0.17	+1.2
1,221,444	-		GFF1205	0.17	+1.9
1,221,444	-		GFF1205	0.17	+0.2
1,221,444	-		GFF1205	0.17	-0.9
1,221,444	-		GFF1205	0.17	-0.7
1,221,444	-		GFF1205	0.17	-1.5
1,221,444	-		GFF1205	0.17	-1.8
1,221,444	-		GFF1205	0.17	+0.2
1,221,463	+		GFF1205	0.18	-0.5
1,221,463	+		GFF1205	0.18	+0.2
1,221,463	+		GFF1205	0.18	-0.1
1,221,463	+		GFF1205	0.18	-1.4
1,221,463	+		GFF1205	0.18	+0.2
1,221,463	+		GFF1205	0.18	+0.1
1,221,463	+		GFF1205	0.18	-0.8
1,221,463	+		GFF1205	0.18	+0.0
1,221,463	+		GFF1205	0.18	-2.2
1,221,463	+		GFF1205	0.18	-0.8
1,221,463	+		GFF1205	0.18	-0.8
1,221,463	+		GFF1205	0.18	-0.4
1,221,463	+		GFF1205	0.18	+1.2
1,221,463	+		GFF1205	0.18	-0.5
1,221,463	+		GFF1205	0.18	+0.1
1,221,471	-		GFF1205	0.19	-0.6
1,221,471	-		GFF1205	0.19	+1.0
1,221,471	-		GFF1205	0.19	+0.4
1,221,471	-		GFF1205	0.19	-1.2
1,221,471	-		GFF1205	0.19	+0.2
1,221,471	-		GFF1205	0.19	+0.4
1,221,471	-		GFF1205	0.19	-1.1
1,221,471	-		GFF1205	0.19	-2.4
1,221,492	-		GFF1205	0.20	-0.4
1,221,494	-		GFF1205	0.20	+0.8
1,221,500	-		GFF1205	0.21	+0.5
1,221,500	-		GFF1205	0.21	-0.8
1,221,507	-		GFF1205	0.21	+0.6
1,221,507	-		GFF1205	0.21	+0.8
1,221,507	-		GFF1205	0.21	-1.4
1,221,510	+		GFF1205	0.21	+0.9
1,221,517	-		GFF1205	0.22	+0.2
1,221,518	-		GFF1205	0.22	-0.3
1,221,518	-		GFF1205	0.22	-0.2
1,221,525	-		GFF1205	0.22	+0.7
1,221,525	-		GFF1205	0.22	-0.3
1,221,525	-		GFF1205	0.22	+0.0
1,221,538	+		GFF1205	0.23	-0.9
1,221,538	+		GFF1205	0.23	+0.2
1,221,546	+		GFF1205	0.24	+0.7
1,221,546	+		GFF1205	0.24	-1.7
1,221,554	-		GFF1205	0.24	+0.1
1,221,554	-		GFF1205	0.24	-1.4
1,221,554	-		GFF1205	0.24	-1.5
1,221,554	-		GFF1205	0.24	-0.3
1,221,557	+		GFF1205	0.24	+1.6
1,221,564	-		GFF1205	0.25	-0.3
1,221,565	+		GFF1205	0.25	-0.0
1,221,565	-		GFF1205	0.25	-0.2
1,221,573	-		GFF1205	0.25	+0.9
1,221,599	+		GFF1205	0.27	-0.7
1,221,607	-		GFF1205	0.27	+1.4
1,221,617	+		GFF1205	0.28	+0.6
1,221,625	-		GFF1205	0.29	-0.7
1,221,625	-		GFF1205	0.29	-0.3
1,221,625	-		GFF1205	0.29	+0.2
1,221,635	-		GFF1205	0.29	+1.3
1,221,644	+		GFF1205	0.30	-0.9
1,221,649	+		GFF1205	0.30	-0.3
1,221,677	-		GFF1205	0.32	+0.5
1,221,677	-		GFF1205	0.32	+0.5
1,221,677	-		GFF1205	0.32	-0.3
1,221,701	-		GFF1205	0.34	-1.3
1,221,703	+		GFF1205	0.34	+0.4
1,221,703	+		GFF1205	0.34	-2.1
1,221,711	-		GFF1205	0.34	-1.7
1,221,725	+		GFF1205	0.35	+0.1
1,221,755	+		GFF1205	0.37	+0.7
1,221,758	-		GFF1205	0.37	+1.2
1,221,763	-		GFF1205	0.38	+0.1
1,221,763	-		GFF1205	0.38	+0.6
1,221,819	+		GFF1205	0.41	-1.4
1,221,825	-		GFF1205	0.41	+0.8
1,221,827	-		GFF1205	0.42	-0.3
1,221,834	+		GFF1205	0.42	-0.4
1,221,842	-		GFF1205	0.43	-0.5
1,221,842	-		GFF1205	0.43	+0.2
1,221,842	-		GFF1205	0.43	+0.2
1,221,844	+		GFF1205	0.43	-0.4
1,221,844	+		GFF1205	0.43	-0.3
1,221,844	+		GFF1205	0.43	-0.6
1,221,844	+		GFF1205	0.43	+0.3
1,221,844	+		GFF1205	0.43	+1.6
1,221,844	+		GFF1205	0.43	+0.2
1,221,847	-		GFF1205	0.43	+0.6
1,221,847	-		GFF1205	0.43	-0.2
1,221,847	-		GFF1205	0.43	+0.1
1,221,852	-		GFF1205	0.43	-1.4
1,221,852	-		GFF1205	0.43	-0.4
1,221,852	-		GFF1205	0.43	-0.5
1,221,852	-		GFF1205	0.43	-1.3
1,221,852	-		GFF1205	0.43	-0.4
1,221,852	-		GFF1205	0.43	-2.2
1,221,852	-		GFF1205	0.43	+1.1
1,221,852	-		GFF1205	0.43	-0.7
1,221,852	-		GFF1205	0.43	-0.5
1,221,852	-		GFF1205	0.43	-0.6
1,221,852	-		GFF1205	0.43	-0.8
1,221,852	-		GFF1205	0.43	-0.5
1,221,854	+		GFF1205	0.43	+1.2
1,221,869	+		GFF1205	0.44	-2.0
1,221,869	+		GFF1205	0.44	-0.7
1,221,869	+		GFF1205	0.44	+0.1
1,221,874	+		GFF1205	0.45	+1.2
1,221,882	-		GFF1205	0.45	-2.1
1,221,885	-		GFF1205	0.45	-0.3
1,221,885	-		GFF1205	0.45	-0.3
1,221,887	+		GFF1205	0.45	-0.6
1,221,887	+		GFF1205	0.45	+1.3
1,221,887	+		GFF1205	0.45	-0.7
1,221,887	+		GFF1205	0.45	-0.6
1,221,895	-		GFF1205	0.46	-0.9
1,221,895	-		GFF1205	0.46	+0.1
1,221,902	+		GFF1205	0.46	-0.3
1,221,902	+		GFF1205	0.46	+0.0
1,221,905	-		GFF1205	0.47	+1.0
1,221,907	+		GFF1205	0.47	+0.3
1,221,915	-		GFF1205	0.47	-0.7
1,221,915	-		GFF1205	0.47	-0.4
1,221,915	-		GFF1205	0.47	+0.6
1,221,935	+		GFF1205	0.49	-1.3
1,221,935	+		GFF1205	0.49	-1.0
1,221,938	-		GFF1205	0.49	+0.2
1,221,940	+		GFF1205	0.49	+0.9
1,221,940	+		GFF1205	0.49	-0.6
1,221,940	+		GFF1205	0.49	-1.5
1,221,943	-		GFF1205	0.49	-1.8
1,221,944	+		GFF1205	0.49	+0.0
1,221,969	-		GFF1205	0.51	-0.1
1,222,003	+		GFF1205	0.53	-0.6
1,222,022	+		GFF1205	0.54	-0.2
1,222,044	+		GFF1205	0.56	-2.8
1,222,044	+		GFF1205	0.56	-0.9
1,222,044	+		GFF1205	0.56	-0.4
1,222,044	+		GFF1205	0.56	-1.3
1,222,044	+		GFF1205	0.56	-0.2
1,222,044	+		GFF1205	0.56	+0.0
1,222,045	-		GFF1205	0.56	+0.2
1,222,052	-		GFF1205	0.56	-1.2
1,222,052	-		GFF1205	0.56	+0.3
1,222,052	-		GFF1205	0.56	-1.5
1,222,052	-		GFF1205	0.56	+0.1
1,222,052	-		GFF1205	0.56	-1.4
1,222,056	+		GFF1205	0.56	-1.2
1,222,064	-		GFF1205	0.57	-0.3
1,222,075	+		GFF1205	0.58	+0.8
1,222,075	+		GFF1205	0.58	-0.4
1,222,075	+		GFF1205	0.58	-1.9
1,222,075	+		GFF1205	0.58	+0.2
1,222,075	+		GFF1205	0.58	+0.8
1,222,075	+		GFF1205	0.58	+0.5
1,222,075	+		GFF1205	0.58	+0.3
1,222,075	+		GFF1205	0.58	-0.4
1,222,075	+		GFF1205	0.58	+0.6
1,222,075	+		GFF1205	0.58	-0.3
1,222,075	+		GFF1205	0.58	+0.3
1,222,075	+		GFF1205	0.58	-1.7
1,222,075	+		GFF1205	0.58	-1.3
1,222,075	+		GFF1205	0.58	-1.2
1,222,075	+		GFF1205	0.58	-2.5
1,222,075	+		GFF1205	0.58	+0.0
1,222,075	+		GFF1205	0.58	-1.6
1,222,075	+		GFF1205	0.58	-0.2
1,222,075	+		GFF1205	0.58	+0.3
1,222,082	+		GFF1205	0.58	+1.2
1,222,083	-		GFF1205	0.58	+0.1
1,222,083	-		GFF1205	0.58	+1.2
1,222,083	-		GFF1205	0.58	+0.1
1,222,083	-		GFF1205	0.58	+1.2
1,222,083	-		GFF1205	0.58	-0.1
1,222,083	-		GFF1205	0.58	-1.5
1,222,083	-		GFF1205	0.58	-1.5
1,222,083	-		GFF1205	0.58	-0.4
1,222,083	-		GFF1205	0.58	-2.6
1,222,083	-		GFF1205	0.58	-1.0
1,222,083	-		GFF1205	0.58	+0.6
1,222,083	-		GFF1205	0.58	+0.4
1,222,083	-		GFF1205	0.58	+1.0
1,222,137	+		GFF1205	0.62	-1.3
1,222,137	+		GFF1205	0.62	-0.2
1,222,137	+		GFF1205	0.62	+0.9
1,222,137	+		GFF1205	0.62	+1.0
1,222,137	+		GFF1205	0.62	+2.2
1,222,137	+		GFF1205	0.62	-1.3
1,222,145	-		GFF1205	0.62	-1.8
1,222,145	-		GFF1205	0.62	-1.0
1,222,145	-		GFF1205	0.62	+1.0
1,222,145	-		GFF1205	0.62	+0.1
1,222,147	+		GFF1205	0.62	+1.3
1,222,147	+		GFF1205	0.62	-0.7
1,222,147	+		GFF1205	0.62	+1.0
1,222,147	+		GFF1205	0.62	+0.8
1,222,147	+		GFF1205	0.62	+0.3
1,222,147	+		GFF1205	0.62	+0.1
1,222,147	+		GFF1205	0.62	-0.5
1,222,147	+		GFF1205	0.62	-0.1
1,222,147	+		GFF1205	0.62	+0.9
1,222,147	+		GFF1205	0.62	-1.0
1,222,147	+		GFF1205	0.62	-1.4
1,222,155	+		GFF1205	0.63	+0.3
1,222,155	-		GFF1205	0.63	-0.7
1,222,155	-		GFF1205	0.63	-1.3
1,222,155	-		GFF1205	0.63	-2.4
1,222,155	-		GFF1205	0.63	+0.3
1,222,163	+		GFF1205	0.63	+0.2
1,222,163	+		GFF1205	0.63	-0.9
1,222,175	-		GFF1205	0.64	-0.1
1,222,205	+		GFF1205	0.66	-1.0
1,222,213	-		GFF1205	0.66	-0.9
1,222,213	-		GFF1205	0.66	-2.7
1,222,266	+		GFF1205	0.70	-0.7
1,222,268	+		GFF1205	0.70	-0.0
1,222,268	+		GFF1205	0.70	-0.2
1,222,276	-		GFF1205	0.70	+0.0
1,222,276	-		GFF1205	0.70	-0.6
1,222,276	-		GFF1205	0.70	-0.0
1,222,311	-		GFF1205	0.73	-0.7
1,222,312	-		GFF1205	0.73	+1.0
1,222,312	-		GFF1205	0.73	+1.1
1,222,344	+		GFF1205	0.75	-0.7
1,222,344	+		GFF1205	0.75	+0.1
1,222,352	-		GFF1205	0.75	-0.7
1,222,360	-		GFF1205	0.76	-1.0
1,222,366	+		GFF1205	0.76	+0.1
1,222,384	-		GFF1205	0.77	+0.8
1,222,411	+		GFF1205	0.79	-1.4
1,222,421	+		GFF1205	0.80	-0.3
1,222,424	-		GFF1205	0.80	-2.6
1,222,430	-		GFF1205	0.80	+0.2
1,222,470	-		GFF1205	0.83	-0.6
1,222,474	+		GFF1205	0.83	-0.7
1,222,484	+		GFF1205	0.84	-2.3
1,222,484	+		GFF1205	0.84	+0.4
1,222,485	+		GFF1205	0.84	-2.2
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