Strain Fitness in Sphingobium sp. HT1-2 around GFF120

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
112,155	-				-0.2
112,155	-				+1.3
112,626	-		GFF119	0.64	+0.7
112,964	+				-0.7
112,972	-				-0.8
112,974	-				+0.3
112,979	-				-0.1
113,011	+				-1.0
113,036	-				+0.2
113,063	+				+0.1
113,081	-				-1.5
113,103	-				-2.4
113,117	+				-1.1
113,125	-				-1.5
113,140	+				-2.1
113,150	+				-2.2
113,150	+				-2.4
113,158	-				-0.5
113,184	+				-1.0
113,215	+				-0.6
113,223	-				-1.9
113,239	+				-1.5
113,247	-				-2.4
113,267	+		GFF120	0.10	-2.6
113,275	-		GFF120	0.11	-1.8
113,279	+		GFF120	0.11	-2.2
113,300	+		GFF120	0.12	-3.2
113,345	+		GFF120	0.15	-1.4
113,350	+		GFF120	0.16	-1.6
113,350	+		GFF120	0.16	-1.5
113,352	+		GFF120	0.16	-3.0
113,353	-		GFF120	0.16	-1.5
113,353	-		GFF120	0.16	+0.2
113,358	-		GFF120	0.16	-1.7
113,375	-		GFF120	0.17	-0.3
113,379	+		GFF120	0.18	-1.7
113,379	+		GFF120	0.18	-0.3
113,380	-		GFF120	0.18	-0.3
113,382	-		GFF120	0.18	-1.2
113,387	-		GFF120	0.18	-1.2
113,387	-		GFF120	0.18	-0.4
113,387	-		GFF120	0.18	-0.9
113,387	-		GFF120	0.18	+0.3
113,387	-		GFF120	0.18	+0.3
113,387	-		GFF120	0.18	-0.9
113,387	-		GFF120	0.18	-0.8
113,387	-		GFF120	0.18	-1.3
113,389	+		GFF120	0.18	-1.5
113,407	+		GFF120	0.19	-1.6
113,407	+		GFF120	0.19	-1.0
113,415	-		GFF120	0.20	+0.3
113,417	+		GFF120	0.20	-2.0
113,417	+		GFF120	0.20	+0.0
113,417	+		GFF120	0.20	-1.5
113,417	+		GFF120	0.20	-0.9
113,417	+		GFF120	0.20	-0.3
113,417	+		GFF120	0.20	-0.7
113,417	+		GFF120	0.20	-1.0
113,417	+		GFF120	0.20	-0.9
113,417	+		GFF120	0.20	-1.2
113,417	+		GFF120	0.20	-0.8
113,417	+		GFF120	0.20	-1.9
113,417	+		GFF120	0.20	-0.8
113,417	+		GFF120	0.20	-1.2
113,417	+		GFF120	0.20	-2.1
113,420	-		GFF120	0.20	-3.1
113,425	-		GFF120	0.21	-2.3
113,425	-		GFF120	0.21	-2.7
113,425	-		GFF120	0.21	-1.8
113,425	-		GFF120	0.21	+0.7
113,425	-		GFF120	0.21	-1.3
113,425	-		GFF120	0.21	-0.5
113,425	-		GFF120	0.21	-0.7
113,425	-		GFF120	0.21	-1.2
113,425	-		GFF120	0.21	-1.2
113,432	-		GFF120	0.21	-1.8
113,450	+		GFF120	0.22	-0.9
113,458	-		GFF120	0.23	-0.3
113,488	+		GFF120	0.25	-1.3
113,527	+		GFF120	0.27	-1.9
113,527	+		GFF120	0.27	-2.5
113,527	+		GFF120	0.27	-1.3
113,527	+		GFF120	0.27	-0.9
113,527	+		GFF120	0.27	-0.5
113,535	-		GFF120	0.28	-0.3
113,535	-		GFF120	0.28	-1.5
113,535	-		GFF120	0.28	-1.2
113,549	+		GFF120	0.29	+0.3
113,550	-		GFF120	0.29	-1.7
113,552	+		GFF120	0.29	-2.4
113,577	+		GFF120	0.31	-2.4
113,577	+		GFF120	0.31	+0.1
113,584	-		GFF120	0.31	-2.9
113,638	-		GFF120	0.35	-1.5
113,649	-		GFF120	0.36	-0.9
113,670	+		GFF120	0.37	-1.6
113,686	+		GFF120	0.38	-1.8
113,741	-		GFF120	0.42	-2.3
113,816	+		GFF120	0.47	-1.0
113,894	+		GFF120	0.52	-1.0
113,894	+		GFF120	0.52	+0.3
113,894	+		GFF120	0.52	-2.5
113,896	+		GFF120	0.52	-1.7
113,902	-		GFF120	0.52	+1.1
113,902	-		GFF120	0.52	-0.4
113,902	-		GFF120	0.52	-1.2
113,902	-		GFF120	0.52	-0.3
113,902	-		GFF120	0.52	-2.4
113,931	+		GFF120	0.54	-0.5
113,947	+		GFF120	0.55	-0.3
113,955	-		GFF120	0.56	-0.3
114,049	+		GFF120	0.62	-3.7
114,069	+		GFF120	0.64	-1.2
114,080	-		GFF120	0.64	-0.5
114,082	-		GFF120	0.64	-2.4
114,087	-		GFF120	0.65	-1.3
114,090	-		GFF120	0.65	-1.6
114,165	+		GFF120	0.70	-1.6
114,176	+		GFF120	0.71	+0.3
114,184	+		GFF120	0.71	-2.2
114,202	-		GFF120	0.72	-0.2
114,202	-		GFF120	0.72	-1.0
114,202	-		GFF120	0.72	-0.0
114,203	+		GFF120	0.73	-1.6
114,229	+		GFF120	0.74	+0.5
114,236	-		GFF120	0.75	-1.5
114,261	+		GFF120	0.76	+0.7
114,275	+		GFF120	0.77	-1.5
114,278	+		GFF120	0.78	+0.3
114,288	-		GFF120	0.78	-2.0
114,308	-		GFF120	0.80	-2.0
114,313	-		GFF120	0.80	-1.5
114,321	-		GFF120	0.80	-1.5
114,330	+		GFF120	0.81	-0.9
114,330	+		GFF120	0.81	-1.2
114,338	-		GFF120	0.82	-0.0
114,347	+		GFF120	0.82	-1.3
114,347	+		GFF120	0.82	-1.9
114,347	+		GFF120	0.82	-2.1
114,347	+		GFF120	0.82	-2.1
114,347	+		GFF120	0.82	+0.3
114,347	+		GFF120	0.82	-1.3
114,355	-		GFF120	0.83	-1.4
114,355	-		GFF120	0.83	-0.9
114,355	-		GFF120	0.83	-2.0
114,363	+		GFF120	0.83	-2.6
114,365	-		GFF120	0.83	+0.2
114,383	-		GFF120	0.85	-0.0
114,383	-		GFF120	0.85	-1.2
114,391	-		GFF120	0.85	-1.1
114,394	+		GFF120	0.85	-1.2
114,412	+		GFF120	0.86	-1.8
114,412	+		GFF120	0.86	-0.3
114,419	+		GFF120	0.87	-2.0
114,426	-		GFF120	0.87	-0.2
114,467	+				-1.5
114,495	-				-1.6
114,496	+				-2.2
114,496	-				-0.9
114,504	-				-0.3
114,504	-				+0.5
114,504	-				-0.3
114,506	+				-0.3
114,511	+				+0.8
114,514	-				-0.7
114,514	-				-1.9
114,519	-				-1.4
114,546	-				-0.6
114,590	+				-1.0
114,616	+				+0.7
114,653	+				-0.9
114,655	+				-1.5
114,668	-				-0.9
114,698	+				+0.2
114,698	+				+0.3
114,698	+				+1.1
114,706	-				+0.3
114,715	+				+0.1
114,723	-				+0.1
114,725	-				+0.4
114,860	-				-0.0
114,860	-				+1.5
114,974	+		GFF121	0.12	-0.0
114,974	+		GFF121	0.12	-0.4
114,982	-		GFF121	0.13	-0.4
114,999	+		GFF121	0.14	-0.8
114,999	+		GFF121	0.14	+0.1
115,002	+		GFF121	0.14	+1.8
115,007	-		GFF121	0.14	+1.5
115,007	-		GFF121	0.14	+1.0
115,032	+		GFF121	0.16	+0.4
115,032	-		GFF121	0.16	-0.3
115,040	-		GFF121	0.17	+1.9
115,054	+		GFF121	0.18	+0.4
115,054	+		GFF121	0.18	+0.5
115,062	-		GFF121	0.18	-3.0
115,064	+		GFF121	0.19	-1.0
115,067	-		GFF121	0.19	+0.4
115,069	+		GFF121	0.19	+0.4
115,079	+		GFF121	0.20	-2.0
115,079	+		GFF121	0.20	+1.4
115,094	+		GFF121	0.21	-0.6
115,102	-		GFF121	0.21	+0.1
115,103	+		GFF121	0.22	-0.3
115,103	+		GFF121	0.22	+1.8
115,103	+		GFF121	0.22	-0.9
115,103	+		GFF121	0.22	+1.1
115,104	+		GFF121	0.22	+1.0
115,111	-		GFF121	0.22	+0.9
115,111	-		GFF121	0.22	-0.7
115,134	+		GFF121	0.24	+0.7
115,135	-		GFF121	0.24	+2.9
115,140	-		GFF121	0.24	+0.3
115,208	+		GFF121	0.29	+0.2
115,213	+		GFF121	0.30	+1.6
115,227	-		GFF121	0.31	-0.7
115,256	+		GFF121	0.33	+1.1
115,257	-		GFF121	0.33	+0.3
115,258	-		GFF121	0.33	-1.2
115,264	+		GFF121	0.33	+1.1
115,265	-		GFF121	0.34	+0.5
115,272	-		GFF121	0.34	-0.8
115,272	-		GFF121	0.34	-0.2
115,290	-		GFF121	0.35	-0.7
115,293	+		GFF121	0.36	-0.9
115,320	-		GFF121	0.38	+0.1
115,330	-		GFF121	0.38	-0.3
115,369	+		GFF121	0.41	-0.7
115,369	+		GFF121	0.41	-1.5
115,387	+		GFF121	0.43	-0.2
115,395	-		GFF121	0.43	-1.2
115,409	+		GFF121	0.44	-0.4
115,529	+		GFF121	0.53	-0.1
115,597	-		GFF121	0.58	-0.0