Strain Fitness in Sphingobium sp. HT1-2 around GFF1198

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,210,329	+		GFF1197	0.22	-0.6
1,210,329	-		GFF1197	0.22	-0.5
1,210,329	-		GFF1197	0.22	-0.8
1,210,331	+		GFF1197	0.22	-1.5
1,210,331	+		GFF1197	0.22	-0.1
1,210,331	+		GFF1197	0.22	-1.5
1,210,331	+		GFF1197	0.22	-1.4
1,210,339	-		GFF1197	0.23	-1.1
1,210,339	-		GFF1197	0.23	-2.3
1,210,432	+		GFF1197	0.30	-0.1
1,210,440	-		GFF1197	0.31	-0.6
1,210,445	-		GFF1197	0.31	-0.3
1,210,451	+		GFF1197	0.32	+0.3
1,210,485	-		GFF1197	0.35	-0.3
1,210,507	-		GFF1197	0.36	-0.8
1,210,520	-		GFF1197	0.37	-0.0
1,210,567	+		GFF1197	0.41	-0.7
1,210,567	+		GFF1197	0.41	-1.1
1,210,567	+		GFF1197	0.41	-0.3
1,210,567	+		GFF1197	0.41	-0.6
1,210,567	+		GFF1197	0.41	+1.4
1,210,575	-		GFF1197	0.42	+0.3
1,210,575	-		GFF1197	0.42	+0.3
1,210,575	-		GFF1197	0.42	-1.3
1,210,575	-		GFF1197	0.42	-1.6
1,210,575	-		GFF1197	0.42	-0.5
1,210,577	+		GFF1197	0.42	-0.7
1,210,577	+		GFF1197	0.42	+0.6
1,210,577	+		GFF1197	0.42	+0.0
1,210,584	+		GFF1197	0.42	-0.8
1,210,585	-		GFF1197	0.43	-1.4
1,210,585	-		GFF1197	0.43	-0.4
1,210,585	-		GFF1197	0.43	-0.1
1,210,585	-		GFF1197	0.43	-0.1
1,210,585	-		GFF1197	0.43	+1.0
1,210,587	+		GFF1197	0.43	-0.6
1,210,597	-		GFF1197	0.43	-1.4
1,210,665	+		GFF1197	0.49	+0.6
1,210,665	+		GFF1197	0.49	+0.4
1,210,665	+		GFF1197	0.49	-2.7
1,210,690	-		GFF1197	0.51	-1.7
1,210,700	+		GFF1197	0.52	-1.1
1,210,709	+		GFF1197	0.52	-0.2
1,210,715	+		GFF1197	0.53	-0.1
1,210,715	+		GFF1197	0.53	+0.2
1,210,715	+		GFF1197	0.53	+0.2
1,210,715	+		GFF1197	0.53	-0.1
1,210,716	+		GFF1197	0.53	+0.3
1,210,716	-		GFF1197	0.53	-1.8
1,210,716	-		GFF1197	0.53	+1.3
1,210,725	+		GFF1197	0.54	+0.4
1,210,733	-		GFF1197	0.54	+0.4
1,210,797	-		GFF1197	0.59	-0.8
1,210,807	+		GFF1197	0.60	-0.3
1,210,815	-		GFF1197	0.61	-1.7
1,210,821	+		GFF1197	0.61	+0.2
1,210,821	+		GFF1197	0.61	-0.8
1,210,821	+		GFF1197	0.61	-0.9
1,210,838	+		GFF1197	0.63	-0.9
1,210,840	+		GFF1197	0.63	+0.9
1,210,848	+		GFF1197	0.64	+1.2
1,210,848	-		GFF1197	0.64	+0.4
1,210,848	-		GFF1197	0.64	-1.3
1,210,856	-		GFF1197	0.64	+0.5
1,210,856	-		GFF1197	0.64	+0.3
1,210,861	-		GFF1197	0.65	+0.4
1,210,868	+		GFF1197	0.65	-0.2
1,210,868	+		GFF1197	0.65	+0.9
1,210,868	+		GFF1197	0.65	-0.6
1,210,868	+		GFF1197	0.65	+0.3
1,210,876	-		GFF1197	0.66	-0.2
1,210,878	-		GFF1197	0.66	+0.3
1,210,896	+		GFF1197	0.67	-0.5
1,210,896	+		GFF1197	0.67	-0.3
1,210,896	+		GFF1197	0.67	-0.0
1,210,904	-		GFF1197	0.68	+0.4
1,210,904	-		GFF1197	0.68	-0.9
1,210,904	-		GFF1197	0.68	-0.3
1,210,904	-		GFF1197	0.68	-3.2
1,210,904	-		GFF1197	0.68	-2.0
1,210,938	-		GFF1197	0.71	+0.2
1,210,961	+		GFF1197	0.73	+0.6
1,210,961	+		GFF1197	0.73	+0.8
1,210,961	+		GFF1197	0.73	-0.8
1,210,961	+		GFF1197	0.73	+0.2
1,210,961	+		GFF1197	0.73	-3.0
1,210,961	+		GFF1197	0.73	-0.6
1,210,969	-		GFF1197	0.73	-1.3
1,210,969	-		GFF1197	0.73	-1.9
1,210,969	-		GFF1197	0.73	+1.2
1,210,969	-		GFF1197	0.73	-0.1
1,210,970	-		GFF1197	0.73	-0.2
1,210,971	+		GFF1197	0.73	+0.7
1,210,974	-		GFF1197	0.74	-1.0
1,211,017	+		GFF1197	0.77	-1.6
1,211,021	-		GFF1197	0.77	+0.2
1,211,025	-		GFF1197	0.78	-0.2
1,211,025	-		GFF1197	0.78	+0.9
1,211,043	-		GFF1197	0.79	+0.1
1,211,074	-		GFF1197	0.82	-1.3
1,211,093	+		GFF1197	0.83	+0.1
1,211,094	+		GFF1197	0.83	+0.1
1,211,094	+		GFF1197	0.83	-3.0
1,211,096	+		GFF1197	0.83	-0.3
1,211,109	+		GFF1197	0.84	+0.4
1,211,159	+		GFF1197	0.88	+0.8
1,211,168	+		GFF1197	0.89	-0.3
1,211,176	-		GFF1197	0.90	-1.8
1,211,176	-		GFF1197	0.90	-0.4
1,211,176	-		GFF1197	0.90	+0.0
1,211,195	+				+1.0
1,211,203	+				-0.6
1,211,206	+				-1.7
1,211,211	-				-1.5
1,211,211	-				+0.1
1,211,211	-				+0.9
1,211,211	-				-1.5
1,211,225	+				+1.0
1,211,235	+				+0.2
1,211,240	+				+0.3
1,211,313	-				+0.2
1,211,315	+				+0.3
1,211,324	-				-0.8
1,211,327	+				-2.0
1,211,338	+				-0.4
1,211,338	+				+0.4
1,211,346	-				-0.2
1,211,355	+				+0.7
1,211,360	+				-2.0
1,211,360	+				-0.1
1,211,360	+				+1.0
1,211,360	+				-2.0
1,211,360	+				-0.0
1,211,360	+				-1.6
1,211,360	+				-0.4
1,211,360	+				+0.7
1,211,360	+				-0.2
1,211,360	+				-1.6
1,211,360	+				-1.6
1,211,360	+				-0.1
1,211,360	+				-0.5
1,211,360	+				-1.0
1,211,360	+				+1.1
1,211,360	+				-0.4
1,211,360	+				-1.5
1,211,361	-				-0.0
1,211,363	-				-0.6
1,211,368	-				+1.5
1,211,368	-				+0.4
1,211,368	-				-0.9
1,211,368	-				-1.6
1,211,368	-				-0.2
1,211,368	-				+0.5
1,211,368	-				-0.7
1,211,368	-				-2.1
1,211,368	-				+0.2
1,211,368	-				-1.1
1,211,368	-				+1.1
1,211,368	-				-1.0
1,211,368	-				-0.3
1,211,381	+				-0.6
1,211,413	+				+0.8
1,211,423	-				+0.0
1,211,436	+		GFF1198	0.11	-0.3
1,211,444	-		GFF1198	0.11	-1.7
1,211,446	+		GFF1198	0.12	-0.4
1,211,449	-		GFF1198	0.12	+0.6
1,211,457	+		GFF1198	0.12	+0.9
1,211,462	+		GFF1198	0.13	+1.0
1,211,470	-		GFF1198	0.14	-1.6
1,211,477	-		GFF1198	0.14	+0.6
1,211,479	+		GFF1198	0.14	-0.7
1,211,479	+		GFF1198	0.14	-0.3
1,211,482	-		GFF1198	0.15	+0.3
1,211,487	-		GFF1198	0.15	+0.6
1,211,496	+		GFF1198	0.16	+0.4
1,211,501	+		GFF1198	0.16	+0.7
1,211,543	+		GFF1198	0.20	-0.9
1,211,554	+		GFF1198	0.21	+0.3
1,211,559	+		GFF1198	0.21	-0.4
1,211,559	+		GFF1198	0.21	-1.8
1,211,562	-		GFF1198	0.21	+1.3
1,211,562	-		GFF1198	0.21	+0.7
1,211,564	+		GFF1198	0.21	+0.2
1,211,567	-		GFF1198	0.22	+1.3
1,211,567	-		GFF1198	0.22	-1.4
1,211,567	-		GFF1198	0.22	-2.4
1,211,567	-		GFF1198	0.22	-0.6
1,211,567	-		GFF1198	0.22	+1.5
1,211,567	-		GFF1198	0.22	-0.9
1,211,591	+		GFF1198	0.24	+1.2
1,211,604	-		GFF1198	0.25	+0.8
1,211,609	+		GFF1198	0.25	-2.3
1,211,623	+		GFF1198	0.26	-0.2
1,211,625	-		GFF1198	0.26	-0.1
1,211,631	-		GFF1198	0.27	+0.3
1,211,643	+		GFF1198	0.28	+0.9
1,211,643	+		GFF1198	0.28	-0.4
1,211,651	-		GFF1198	0.29	-0.3
1,211,684	-		GFF1198	0.31	-0.2
1,211,699	+		GFF1198	0.33	+0.6
1,211,700	-		GFF1198	0.33	+0.4
1,211,704	+		GFF1198	0.33	+2.0
1,211,707	-		GFF1198	0.33	+0.9
1,211,707	-		GFF1198	0.33	+1.1
1,211,715	+		GFF1198	0.34	-0.6
1,211,715	+		GFF1198	0.34	-1.2
1,211,715	+		GFF1198	0.34	-0.2
1,211,715	+		GFF1198	0.34	+1.0
1,211,723	-		GFF1198	0.35	+1.0
1,211,729	-		GFF1198	0.35	-1.9
1,211,741	+		GFF1198	0.36	-1.9
1,211,749	-		GFF1198	0.37	-0.7
1,211,749	-		GFF1198	0.37	-1.4
1,211,769	-		GFF1198	0.38	+0.0
1,211,769	-		GFF1198	0.38	+0.2
1,211,789	+		GFF1198	0.40	-1.5
1,211,846	-		GFF1198	0.45	+1.7
1,211,851	-		GFF1198	0.45	+0.1
1,211,857	+		GFF1198	0.46	-0.1
1,211,857	+		GFF1198	0.46	+1.4
1,211,857	+		GFF1198	0.46	-0.0
1,211,857	+		GFF1198	0.46	+0.3
1,211,865	+		GFF1198	0.46	-1.1
1,211,865	-		GFF1198	0.46	+0.1
1,211,865	-		GFF1198	0.46	-1.7
1,211,865	-		GFF1198	0.46	-1.6
1,211,865	-		GFF1198	0.46	-2.4
1,211,865	-		GFF1198	0.46	-0.7
1,211,865	-		GFF1198	0.46	-1.2
1,211,870	+		GFF1198	0.47	-0.4
1,211,880	+		GFF1198	0.48	-1.4
1,211,880	+		GFF1198	0.48	-0.4
1,211,888	-		GFF1198	0.48	-0.9
1,211,889	-		GFF1198	0.48	-1.5
1,211,966	-		GFF1198	0.55	+0.3
1,211,969	+		GFF1198	0.55	-0.1
1,211,969	+		GFF1198	0.55	+1.1
1,211,975	-		GFF1198	0.56	+0.3
1,211,976	-		GFF1198	0.56	+0.7
1,211,977	-		GFF1198	0.56	-1.6
1,211,982	-		GFF1198	0.56	-1.3
1,212,015	-		GFF1198	0.59	-0.2
1,212,025	+		GFF1198	0.60	+0.7
1,212,033	-		GFF1198	0.60	-1.4
1,212,035	+		GFF1198	0.61	-1.6
1,212,043	-		GFF1198	0.61	-0.8
1,212,046	+		GFF1198	0.61	-0.6
1,212,051	+		GFF1198	0.62	-2.2
1,212,051	+		GFF1198	0.62	-2.0
1,212,059	-		GFF1198	0.63	-0.4
1,212,059	-		GFF1198	0.63	+0.2
1,212,059	-		GFF1198	0.63	+0.7
1,212,065	+		GFF1198	0.63	+0.4
1,212,093	-		GFF1198	0.65	-0.0
1,212,099	+		GFF1198	0.66	+0.6
1,212,099	+		GFF1198	0.66	+0.6
1,212,111	+		GFF1198	0.67	+0.8
1,212,112	-		GFF1198	0.67	-1.5
1,212,132	+		GFF1198	0.69	-0.0
1,212,143	+		GFF1198	0.69	+0.8
1,212,143	+		GFF1198	0.69	+1.2
1,212,143	+		GFF1198	0.69	-0.6
1,212,143	+		GFF1198	0.69	-1.7
1,212,143	+		GFF1198	0.69	-1.1
1,212,143	+		GFF1198	0.69	+0.9
1,212,151	-		GFF1198	0.70	-1.2
1,212,171	-		GFF1198	0.72	+0.3
1,212,196	-		GFF1198	0.74	-1.0
1,212,196	-		GFF1198	0.74	-0.5
1,212,196	-		GFF1198	0.74	-0.5
1,212,207	-		GFF1198	0.75	-0.3
1,212,253	+		GFF1198	0.79	-1.0
1,212,261	-		GFF1198	0.79	-0.9
1,212,262	-		GFF1198	0.79	-0.8
1,212,284	+		GFF1198	0.81	-1.1
1,212,287	+		GFF1198	0.81	-0.5
1,212,287	-		GFF1198	0.81	-0.2
1,212,304	+		GFF1198	0.83	-0.9
1,212,304	+		GFF1198	0.83	+0.6
1,212,308	-		GFF1198	0.83	-1.4
1,212,312	-		GFF1198	0.84	-1.7
1,212,337	-		GFF1198	0.86	-0.9
1,212,338	+		GFF1198	0.86	+0.7
1,212,342	-		GFF1198	0.86	+0.6
1,212,357	-		GFF1198	0.87	-1.6
1,212,363	+		GFF1198	0.88	+0.6
1,212,372	-		GFF1198	0.89	-0.4
1,212,387	-		GFF1198	0.90	-0.9
1,212,447	+				-2.2
1,212,461	+				-1.0
1,212,462	+				-0.3
1,212,462	+				+1.0
1,212,474	-				-1.3
1,212,479	-				-0.3
1,212,523	+				-1.2
1,212,523	+				-2.0
1,212,528	+				+0.9
1,212,528	+				-1.1
1,212,534	-				+2.3
1,212,536	-				-0.6
1,212,536	-				-0.4
1,212,536	-				+0.6
1,212,542	+				-0.3
1,212,550	-				+0.4
1,212,550	-				+1.2
1,212,557	+				+0.7
1,212,563	+				+0.2
1,212,568	+				-0.5
1,212,573	+				+0.5
1,212,578	+				+0.2
1,212,581	-				-0.0
1,212,581	-				-1.2
1,212,581	-				-0.5
1,212,581	-				-1.0
1,212,586	-				+0.1
1,212,586	-				+0.2
1,212,586	-				-1.4
1,212,586	-				+0.3
1,212,591	-				-2.4
1,212,606	+				-0.5
1,212,631	-		GFF1199	0.10	-0.0
1,212,637	+		GFF1199	0.11	+0.9
1,212,648	+		GFF1199	0.12	+0.4
1,212,654	-		GFF1199	0.12	-1.0
1,212,671	+		GFF1199	0.14	-1.1
1,212,672	+		GFF1199	0.14	+0.3
1,212,718	+		GFF1199	0.18	+0.2
1,212,726	-		GFF1199	0.19	+0.2
1,212,731	-		GFF1199	0.19	+0.1
1,212,748	+		GFF1199	0.21	-0.4
1,212,786	+		GFF1199	0.25	+1.2
1,212,794	-		GFF1199	0.25	+0.1
1,212,816	+		GFF1199	0.27	+0.7
1,212,836	+		GFF1199	0.29	+0.2
1,212,841	+		GFF1199	0.30	+0.3
1,212,846	-		GFF1199	0.30	+1.9
1,212,854	+		GFF1199	0.31	+0.1
1,212,854	+		GFF1199	0.31	+0.7
1,212,854	+		GFF1199	0.31	-0.1
1,212,854	+		GFF1199	0.31	+0.0
1,212,859	+		GFF1199	0.32	+1.0
1,212,861	+		GFF1199	0.32	-1.4
1,212,861	+		GFF1199	0.32	-0.6
1,212,861	+		GFF1199	0.32	-1.4
1,212,861	+		GFF1199	0.32	-1.5
1,212,862	-		GFF1199	0.32	-0.4
1,212,862	-		GFF1199	0.32	-1.0
1,212,869	-		GFF1199	0.32	-1.8
1,212,869	-		GFF1199	0.32	-1.3
1,212,869	-		GFF1199	0.32	+0.1
1,212,871	+		GFF1199	0.33	-0.7
1,212,871	+		GFF1199	0.33	-1.9
1,212,871	+		GFF1199	0.33	-0.0
1,212,871	+		GFF1199	0.33	+1.3
1,212,876	+		GFF1199	0.33	+0.7
1,212,876	+		GFF1199	0.33	-1.1
1,212,882	+		GFF1199	0.34	-0.1
1,212,900	+		GFF1199	0.35	-0.7
1,212,909	+		GFF1199	0.36	-2.1
1,212,909	+		GFF1199	0.36	+0.2
1,212,909	+		GFF1199	0.36	-2.5
1,212,917	-		GFF1199	0.37	+1.1
1,212,923	+		GFF1199	0.38	-0.7
1,212,968	-		GFF1199	0.42	-1.1
1,212,973	-		GFF1199	0.42	-0.7
1,213,029	-		GFF1199	0.48	+1.3
1,213,057	+		GFF1199	0.50	-1.4
1,213,057	+		GFF1199	0.50	+0.1
1,213,057	+		GFF1199	0.50	+0.7
1,213,057	+		GFF1199	0.50	-0.6
1,213,057	+		GFF1199	0.50	+0.1
1,213,060	-		GFF1199	0.51	+0.6
1,213,065	-		GFF1199	0.51	-0.7
1,213,065	-		GFF1199	0.51	-0.8
1,213,065	-		GFF1199	0.51	-1.2
1,213,070	-		GFF1199	0.51	+0.3
1,213,078	+		GFF1199	0.52	-0.0
1,213,093	+		GFF1199	0.54	-0.6
1,213,093	+		GFF1199	0.54	+0.4
1,213,093	+		GFF1199	0.54	-1.1
1,213,093	+		GFF1199	0.54	+0.2
1,213,095	-		GFF1199	0.54	-0.2
1,213,096	-		GFF1199	0.54	-0.0
1,213,098	+		GFF1199	0.54	+0.5
1,213,103	+		GFF1199	0.55	-1.0
1,213,109	+		GFF1199	0.55	-0.3
1,213,110	-		GFF1199	0.55	-0.7
1,213,111	-		GFF1199	0.55	+1.4
1,213,111	-		GFF1199	0.55	-1.4
1,213,115	+		GFF1199	0.56	-0.1
1,213,117	-		GFF1199	0.56	+0.6
1,213,117	-		GFF1199	0.56	-0.8
1,213,123	-		GFF1199	0.56	+0.3
1,213,124	-		GFF1199	0.57	-2.0
1,213,126	+		GFF1199	0.57	+0.1
1,213,126	+		GFF1199	0.57	-1.4
1,213,134	-		GFF1199	0.58	+0.2
1,213,162	-		GFF1199	0.60	-0.1
1,213,179	-		GFF1199	0.62	-0.4
1,213,194	+		GFF1199	0.63	-0.3
1,213,197	-		GFF1199	0.63	-0.8
1,213,234	+		GFF1199	0.67	+0.7
1,213,239	+		GFF1199	0.67	-1.8
1,213,252	+		GFF1199	0.69	-1.8
1,213,289	+		GFF1199	0.72	-0.6
1,213,290	+		GFF1199	0.72	+1.1
1,213,303	+		GFF1199	0.73	+0.7
1,213,303	+		GFF1199	0.73	-1.1
1,213,307	+		GFF1199	0.74	+0.9
1,213,322	-		GFF1199	0.75	-0.7
1,213,344	-		GFF1199	0.77	-0.2
1,213,353	+		GFF1199	0.78	+0.7
1,213,353	+		GFF1199	0.78	-1.0
1,213,353	+		GFF1199	0.78	-2.2
1,213,353	+		GFF1199	0.78	-2.5
1,213,361	-		GFF1199	0.79	-0.8
1,213,366	-		GFF1199	0.79	-0.8
1,213,369	+		GFF1199	0.80	-0.6
1,213,377	-		GFF1199	0.80	+0.9
1,213,388	-		GFF1199	0.81	-0.3
1,213,404	+		GFF1199	0.83	+1.2
1,213,423	-		GFF1199	0.85	-0.2
1,213,446	+		GFF1199	0.87	-0.1
1,213,453	+		GFF1199	0.88	-0.0
1,213,455	-		GFF1199	0.88	+0.3
1,213,458	+		GFF1199	0.88	-1.0
1,213,458	+		GFF1199	0.88	-0.3
1,213,461	-		GFF1199	0.88	-0.4
1,213,466	-		GFF1199	0.89	-0.0
1,213,466	-		GFF1199	0.89	+0.0
1,213,473	+		GFF1199	0.90	+0.6
1,213,483	+				-1.2
1,213,483	+				-1.2
1,213,486	-				-1.0
1,213,486	-				-1.8
1,213,488	+				-0.7
1,213,488	+				-2.3
1,213,488	+				-2.6
1,213,488	+				-0.5
1,213,488	+				-0.9
1,213,488	+				+1.7
1,213,491	-				+0.3
1,213,491	-				-0.8
1,213,494	+				-1.0
1,213,496	-				-1.9
1,213,496	-				-0.1
1,213,496	-				+0.5
1,213,496	-				-1.3
1,213,496	-				+1.2
1,213,496	-				-1.1
1,213,496	-				-0.7
1,213,496	-				-0.4
1,213,496	-				-0.2
1,213,496	-				-1.8
1,213,503	+				+1.0
1,213,503	+				-1.5
1,213,505	+				-0.7