Strain Fitness in Sphingobium sp. HT1-2 around GFF1150

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,155,824	+				-0.9
1,155,824	+				-2.0
1,155,824	+				-2.8
1,155,824	+				-1.6
1,155,824	+				-2.3
1,155,824	+				-2.0
1,155,829	+		GFF1149	0.10	-0.8
1,155,832	-		GFF1149	0.10	-2.0
1,155,832	-		GFF1149	0.10	-1.8
1,155,832	-		GFF1149	0.10	-2.3
1,155,832	-		GFF1149	0.10	-2.4
1,155,832	-		GFF1149	0.10	-1.6
1,155,832	-		GFF1149	0.10	-1.0
1,155,832	-		GFF1149	0.10	-2.7
1,155,836	+		GFF1149	0.11	-2.7
1,155,838	-		GFF1149	0.11	-2.2
1,155,868	+		GFF1149	0.14	-2.6
1,155,876	-		GFF1149	0.14	-2.9
1,155,890	-		GFF1149	0.16	-1.3
1,155,895	-		GFF1149	0.16	-2.2
1,155,910	-		GFF1149	0.17	-2.1
1,155,916	-		GFF1149	0.18	-0.3
1,155,916	-		GFF1149	0.18	-2.6
1,155,916	-		GFF1149	0.18	-2.1
1,155,923	+		GFF1149	0.19	-2.2
1,155,923	+		GFF1149	0.19	-3.0
1,155,946	+		GFF1149	0.21	-0.6
1,155,946	+		GFF1149	0.21	-2.3
1,155,946	+		GFF1149	0.21	-2.8
1,155,946	+		GFF1149	0.21	-2.0
1,155,946	+		GFF1149	0.21	-2.9
1,155,946	+		GFF1149	0.21	-1.6
1,155,951	+		GFF1149	0.21	-2.5
1,155,954	-		GFF1149	0.21	-1.6
1,155,954	-		GFF1149	0.21	-2.1
1,155,954	-		GFF1149	0.21	-3.1
1,155,954	-		GFF1149	0.21	-1.1
1,155,961	+		GFF1149	0.22	-2.2
1,155,969	-		GFF1149	0.23	-3.9
1,155,987	+		GFF1149	0.24	-3.0
1,156,005	-		GFF1149	0.26	-2.9
1,156,017	-		GFF1149	0.27	-2.2
1,156,017	-		GFF1149	0.27	-1.7
1,156,019	+		GFF1149	0.27	-0.4
1,156,024	+		GFF1149	0.28	-0.6
1,156,036	-		GFF1149	0.29	-3.4
1,156,036	-		GFF1149	0.29	-3.0
1,156,037	-		GFF1149	0.29	-1.4
1,156,086	-		GFF1149	0.33	-2.2
1,156,123	-		GFF1149	0.37	-0.9
1,156,125	-		GFF1149	0.37	-2.7
1,156,164	+		GFF1149	0.40	-3.1
1,156,170	-		GFF1149	0.41	-1.7
1,156,172	-		GFF1149	0.41	-2.4
1,156,189	+		GFF1149	0.43	+0.4
1,156,194	+		GFF1149	0.43	-3.1
1,156,202	-		GFF1149	0.44	-1.1
1,156,220	-		GFF1149	0.46	-1.3
1,156,241	+		GFF1149	0.47	-3.5
1,156,268	+		GFF1149	0.50	-1.9
1,156,281	-		GFF1149	0.51	-1.4
1,156,284	+		GFF1149	0.51	-1.5
1,156,293	+		GFF1149	0.52	-1.2
1,156,293	+		GFF1149	0.52	-1.7
1,156,296	-		GFF1149	0.52	-2.5
1,156,301	-		GFF1149	0.53	+0.3
1,156,301	-		GFF1149	0.53	-1.9
1,156,353	+		GFF1149	0.58	-2.9
1,156,394	-		GFF1149	0.61	-1.8
1,156,449	+		GFF1149	0.66	-1.6
1,156,458	-		GFF1149	0.67	-2.9
1,156,463	-		GFF1149	0.68	-2.1
1,156,467	+		GFF1149	0.68	-2.6
1,156,475	-		GFF1149	0.69	-1.9
1,156,487	-		GFF1149	0.70	-1.4
1,156,530	-		GFF1149	0.74	-2.6
1,156,546	+		GFF1149	0.75	-2.3
1,156,551	+		GFF1149	0.76	-2.2
1,156,552	+		GFF1149	0.76	-1.4
1,156,577	+		GFF1149	0.78	-2.4
1,156,614	-		GFF1149	0.81	-1.9
1,156,669	+		GFF1149	0.86	-2.2
1,156,674	+		GFF1149	0.87	-1.5
1,156,677	-		GFF1149	0.87	-2.9
1,156,679	+		GFF1149	0.87	-3.1
1,156,679	-		GFF1149	0.87	-1.7
1,156,732	-				-1.5
1,156,777	-				-2.1
1,156,777	-				-1.7
1,156,777	-				-1.8
1,156,782	-				-1.4
1,156,782	-				-0.7
1,156,782	-				-0.4
1,156,787	-				-1.5
1,156,807	-				-0.3
1,156,837	-				-3.2
1,156,873	+				-2.7
1,156,927	-		GFF1150	0.11	+0.6
1,156,952	+		GFF1150	0.13	-1.7
1,156,952	+		GFF1150	0.13	-1.8
1,156,953	+		GFF1150	0.13	-3.2
1,156,953	+		GFF1150	0.13	-1.9
1,156,957	+		GFF1150	0.14	-1.6
1,156,960	-		GFF1150	0.14	-2.2
1,156,981	-		GFF1150	0.16	-1.6
1,157,072	+		GFF1150	0.26	-1.4
1,157,072	+		GFF1150	0.26	-1.3
1,157,080	-		GFF1150	0.26	-1.3
1,157,082	+		GFF1150	0.27	-2.5
1,157,087	+		GFF1150	0.27	-1.9
1,157,121	-		GFF1150	0.31	-0.4
1,157,123	-		GFF1150	0.31	+0.9
1,157,132	+		GFF1150	0.32	-1.5
1,157,135	-		GFF1150	0.32	-0.1
1,157,154	-		GFF1150	0.34	-1.7
1,157,161	-		GFF1150	0.35	-1.0
1,157,172	+		GFF1150	0.36	-2.2
1,157,180	+		GFF1150	0.37	-2.8
1,157,180	-		GFF1150	0.37	+0.2
1,157,180	-		GFF1150	0.37	+0.8
1,157,185	-		GFF1150	0.37	-0.5
1,157,193	+		GFF1150	0.38	-1.5
1,157,193	+		GFF1150	0.38	-2.1
1,157,224	-		GFF1150	0.41	+0.6
1,157,260	-		GFF1150	0.45	-1.4
1,157,260	-		GFF1150	0.45	+0.9
1,157,273	+		GFF1150	0.46	-1.4
1,157,283	+		GFF1150	0.47	-0.7
1,157,286	-		GFF1150	0.47	-1.6
1,157,289	+		GFF1150	0.48	-1.0
1,157,290	-		GFF1150	0.48	+0.9
1,157,308	+		GFF1150	0.50	-2.4
1,157,315	+		GFF1150	0.50	-1.5
1,157,315	+		GFF1150	0.50	-2.1
1,157,315	+		GFF1150	0.50	-1.9
1,157,323	-		GFF1150	0.51	+0.6
1,157,323	-		GFF1150	0.51	-1.5
1,157,323	-		GFF1150	0.51	-1.3
1,157,323	-		GFF1150	0.51	-0.7
1,157,330	-		GFF1150	0.52	-0.6
1,157,359	+		GFF1150	0.55	-1.9
1,157,390	+		GFF1150	0.58	-1.5
1,157,398	-		GFF1150	0.59	-1.1
1,157,398	-		GFF1150	0.59	-0.5
1,157,445	+		GFF1150	0.64	-2.6
1,157,445	+		GFF1150	0.64	-2.5
1,157,445	+		GFF1150	0.64	-0.4
1,157,445	+		GFF1150	0.64	-1.9
1,157,445	+		GFF1150	0.64	-1.4
1,157,453	-		GFF1150	0.65	-0.9
1,157,453	-		GFF1150	0.65	-2.8
1,157,453	-		GFF1150	0.65	-0.8
1,157,453	-		GFF1150	0.65	-1.2
1,157,453	-		GFF1150	0.65	+0.6
1,157,465	-		GFF1150	0.66	-3.4
1,157,481	-		GFF1150	0.67	-0.1
1,157,528	+		GFF1150	0.72	-2.8
1,157,528	+		GFF1150	0.72	-2.2
1,157,551	-		GFF1150	0.75	+0.1
1,157,565	+		GFF1150	0.76	-1.9
1,157,565	+		GFF1150	0.76	-2.5
1,157,565	+		GFF1150	0.76	-1.4
1,157,573	-		GFF1150	0.77	-1.5
1,157,573	-		GFF1150	0.77	+0.8
1,157,573	-		GFF1150	0.77	+0.2
1,157,573	-		GFF1150	0.77	+0.2
1,157,573	-		GFF1150	0.77	-1.2
1,157,580	-		GFF1150	0.78	-2.1
1,157,645	+		GFF1150	0.84	-2.1
1,157,652	+		GFF1150	0.85	-1.3
1,157,702	+				-1.8
1,157,714	+				-2.1
1,157,714	+				-2.7
1,157,714	+				-1.8
1,157,720	+				-2.1
1,157,722	-				+1.1
1,157,722	-				-0.9
1,157,722	-				-1.3
1,157,722	-				+0.2
1,157,733	+				-2.9
1,157,779	+				-2.1
1,157,827	+		GFF1151	0.22	-3.6
1,157,897	+		GFF1151	0.73	-0.3
1,157,897	+		GFF1151	0.73	-0.7
1,157,908	+		GFF1151	0.81	+0.3
1,157,928	+				-0.4
1,157,928	+				+0.2
1,157,928	+				-1.7
1,157,944	+				+1.2
1,157,944	+				+0.6
1,157,952	-				+0.9
1,157,972	+				-0.9
1,157,972	+				-0.4
1,157,972	+				-0.3
1,157,977	+				+0.9
1,157,978	-				-1.7