Strain Fitness in Sphingobium sp. HT1-2 around GFF115

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF114 and GFF115 are separated by 134 nucleotidesGFF115 and GFF116 are separated by 31 nucleotides GFF114 - hypothetical protein, at 105,143 to 106,021 GFF114 GFF115 - DNA topoisomerase I (EC 5.99.1.2), at 106,156 to 108,738 GFF115 GFF116 - Uncharacterized ABC1 family protein XCC_1720, at 108,770 to 110,254 GFF116 Position (kb) 106 107 108 109Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 105.184 kb on - strandat 105.184 kb on - strandat 105.221 kb on + strandat 105.259 kb on + strand, within GFF114at 105.260 kb on + strand, within GFF114at 105.260 kb on + strand, within GFF114at 105.260 kb on + strand, within GFF114at 105.260 kb on + strand, within GFF114at 105.260 kb on + strand, within GFF114at 105.276 kb on + strand, within GFF114at 105.286 kb on + strand, within GFF114at 105.287 kb on - strand, within GFF114at 105.292 kb on - strand, within GFF114at 105.329 kb on + strand, within GFF114at 105.329 kb on + strand, within GFF114at 105.334 kb on + strand, within GFF114at 105.337 kb on - strand, within GFF114at 105.337 kb on - strand, within GFF114at 105.350 kb on - strand, within GFF114at 105.350 kb on - strand, within GFF114at 105.367 kb on - strand, within GFF114at 105.367 kb on - strand, within GFF114at 105.400 kb on + strand, within GFF114at 105.425 kb on + strand, within GFF114at 105.440 kb on + strand, within GFF114at 105.453 kb on + strand, within GFF114at 105.476 kb on + strand, within GFF114at 105.491 kb on + strand, within GFF114at 105.491 kb on + strand, within GFF114at 105.512 kb on + strand, within GFF114at 105.512 kb on + strand, within GFF114at 105.512 kb on + strand, within GFF114at 105.512 kb on + strand, within GFF114at 105.512 kb on + strand, within GFF114at 105.520 kb on - strand, within GFF114at 105.520 kb on - strand, within GFF114at 105.520 kb on - strand, within GFF114at 105.526 kb on - strand, within GFF114at 105.555 kb on - strand, within GFF114at 105.555 kb on - strand, within GFF114at 105.555 kb on - strand, within GFF114at 105.601 kb on - strand, within GFF114at 105.603 kb on + strand, within GFF114at 105.603 kb on + strand, within GFF114at 105.611 kb on - strand, within GFF114at 105.631 kb on + strand, within GFF114at 105.639 kb on + strand, within GFF114at 105.639 kb on - strand, within GFF114at 105.656 kb on + strand, within GFF114at 105.669 kb on + strand, within GFF114at 105.669 kb on + strand, within GFF114at 105.669 kb on + strand, within GFF114at 105.677 kb on - strand, within GFF114at 105.677 kb on - strand, within GFF114at 105.681 kb on + strand, within GFF114at 105.682 kb on + strand, within GFF114at 105.689 kb on + strand, within GFF114at 105.689 kb on + strand, within GFF114at 105.689 kb on + strand, within GFF114at 105.697 kb on - strand, within GFF114at 105.697 kb on - strand, within GFF114at 105.699 kb on - strand, within GFF114at 105.710 kb on - strand, within GFF114at 105.715 kb on - strand, within GFF114at 105.722 kb on + strand, within GFF114at 105.735 kb on - strand, within GFF114at 105.737 kb on - strand, within GFF114at 105.739 kb on - strand, within GFF114at 105.739 kb on - strand, within GFF114at 105.749 kb on + strand, within GFF114at 105.749 kb on + strand, within GFF114at 105.770 kb on + strand, within GFF114at 105.778 kb on - strand, within GFF114at 105.788 kb on - strand, within GFF114at 105.793 kb on - strand, within GFF114at 105.798 kb on - strand, within GFF114at 105.825 kb on + strand, within GFF114at 105.835 kb on + strand, within GFF114at 105.865 kb on - strand, within GFF114at 105.914 kb on - strand, within GFF114at 105.916 kb on + strand, within GFF114at 105.919 kb on - strand, within GFF114at 105.932 kb on - strand, within GFF114at 105.973 kb on + strandat 105.981 kb on - strandat 105.982 kb on - strandat 105.982 kb on - strandat 106.031 kb on - strandat 106.101 kb on + strandat 106.118 kb on + strandat 106.128 kb on - strandat 108.377 kb on + strand, within GFF115at 108.428 kb on + strand, within GFF115at 108.475 kb on - strand, within GFF115at 108.626 kb on - strandat 108.733 kb on + strandat 108.741 kb on - strandat 108.773 kb on + strandat 108.894 kb on - strandat 108.898 kb on - strandat 108.984 kb on - strand, within GFF116at 108.992 kb on + strand, within GFF116at 108.992 kb on + strand, within GFF116at 109.026 kb on + strand, within GFF116at 109.027 kb on - strand, within GFF116at 109.034 kb on - strand, within GFF116at 109.034 kb on - strand, within GFF116at 109.034 kb on - strand, within GFF116at 109.036 kb on + strand, within GFF116at 109.044 kb on - strand, within GFF116at 109.077 kb on - strand, within GFF116at 109.079 kb on + strand, within GFF116at 109.099 kb on + strand, within GFF116at 109.099 kb on + strand, within GFF116at 109.099 kb on + strand, within GFF116at 109.099 kb on + strand, within GFF116at 109.107 kb on - strand, within GFF116at 109.107 kb on - strand, within GFF116at 109.107 kb on - strand, within GFF116at 109.107 kb on - strand, within GFF116at 109.117 kb on + strand, within GFF116at 109.128 kb on + strand, within GFF116at 109.130 kb on - strand, within GFF116at 109.146 kb on - strand, within GFF116at 109.151 kb on + strand, within GFF116at 109.187 kb on + strand, within GFF116at 109.217 kb on + strand, within GFF116at 109.249 kb on + strand, within GFF116at 109.249 kb on + strand, within GFF116at 109.257 kb on - strand, within GFF116at 109.275 kb on + strand, within GFF116at 109.287 kb on - strand, within GFF116at 109.316 kb on + strand, within GFF116at 109.360 kb on + strand, within GFF116at 109.360 kb on + strand, within GFF116at 109.363 kb on - strand, within GFF116at 109.367 kb on + strand, within GFF116at 109.436 kb on + strand, within GFF116at 109.442 kb on + strand, within GFF116at 109.442 kb on + strand, within GFF116at 109.447 kb on + strand, within GFF116at 109.450 kb on - strand, within GFF116at 109.455 kb on - strand, within GFF116at 109.455 kb on - strand, within GFF116at 109.462 kb on - strand, within GFF116at 109.478 kb on - strand, within GFF116at 109.524 kb on - strand, within GFF116at 109.525 kb on - strand, within GFF116at 109.584 kb on + strand, within GFF116at 109.592 kb on - strand, within GFF116at 109.592 kb on - strand, within GFF116at 109.604 kb on + strand, within GFF116at 109.649 kb on + strand, within GFF116at 109.689 kb on + strand, within GFF116at 109.689 kb on + strand, within GFF116at 109.689 kb on + strand, within GFF116at 109.697 kb on - strand, within GFF116at 109.720 kb on + strand, within GFF116at 109.735 kb on + strand, within GFF116at 109.735 kb on + strand, within GFF116at 109.735 kb on + strand, within GFF116

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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105,184 - +0.3
105,184 - -1.3
105,221 + +0.7
105,259 + GFF114 0.13 -0.8
105,260 + GFF114 0.13 +0.4
105,260 + GFF114 0.13 +0.1
105,260 + GFF114 0.13 -0.2
105,260 + GFF114 0.13 +0.5
105,260 + GFF114 0.13 -1.8
105,276 + GFF114 0.15 +1.6
105,286 + GFF114 0.16 +0.4
105,287 - GFF114 0.16 -0.7
105,292 - GFF114 0.17 +0.3
105,329 + GFF114 0.21 -0.8
105,329 + GFF114 0.21 -0.2
105,334 + GFF114 0.22 -0.5
105,337 - GFF114 0.22 +1.4
105,337 - GFF114 0.22 -0.4
105,350 - GFF114 0.24 +0.0
105,350 - GFF114 0.24 -0.1
105,367 - GFF114 0.25 +0.7
105,367 - GFF114 0.25 -0.4
105,400 + GFF114 0.29 -0.0
105,425 + GFF114 0.32 +1.1
105,440 + GFF114 0.34 -0.4
105,453 + GFF114 0.35 -0.2
105,476 + GFF114 0.38 +0.4
105,491 + GFF114 0.40 -0.3
105,491 + GFF114 0.40 -1.3
105,512 + GFF114 0.42 -0.3
105,512 + GFF114 0.42 -2.0
105,512 + GFF114 0.42 +0.1
105,512 + GFF114 0.42 +0.0
105,512 + GFF114 0.42 -1.0
105,520 - GFF114 0.43 +0.8
105,520 - GFF114 0.43 +0.0
105,520 - GFF114 0.43 +0.4
105,526 - GFF114 0.44 +1.4
105,555 - GFF114 0.47 -1.1
105,555 - GFF114 0.47 -0.9
105,555 - GFF114 0.47 -1.2
105,601 - GFF114 0.52 -1.0
105,603 + GFF114 0.52 -0.3
105,603 + GFF114 0.52 +0.1
105,611 - GFF114 0.53 -0.0
105,631 + GFF114 0.56 +0.1
105,639 + GFF114 0.56 +0.5
105,639 - GFF114 0.56 +0.8
105,656 + GFF114 0.58 +0.1
105,669 + GFF114 0.60 -0.1
105,669 + GFF114 0.60 -0.8
105,669 + GFF114 0.60 +0.3
105,677 - GFF114 0.61 +0.3
105,677 - GFF114 0.61 +0.8
105,681 + GFF114 0.61 +1.0
105,682 + GFF114 0.61 -0.6
105,689 + GFF114 0.62 -0.2
105,689 + GFF114 0.62 -0.8
105,689 + GFF114 0.62 -0.2
105,697 - GFF114 0.63 -1.6
105,697 - GFF114 0.63 +0.5
105,699 - GFF114 0.63 +1.7
105,710 - GFF114 0.65 -0.3
105,715 - GFF114 0.65 -1.8
105,722 + GFF114 0.66 +1.1
105,735 - GFF114 0.67 +0.6
105,737 - GFF114 0.68 +0.1
105,739 - GFF114 0.68 +1.1
105,739 - GFF114 0.68 +0.2
105,749 + GFF114 0.69 -0.9
105,749 + GFF114 0.69 +1.3
105,770 + GFF114 0.71 -0.0
105,778 - GFF114 0.72 +0.5
105,788 - GFF114 0.73 +1.0
105,793 - GFF114 0.74 +0.6
105,798 - GFF114 0.75 -0.2
105,825 + GFF114 0.78 -1.0
105,835 + GFF114 0.79 -0.4
105,865 - GFF114 0.82 -0.6
105,914 - GFF114 0.88 +0.4
105,916 + GFF114 0.88 -1.5
105,919 - GFF114 0.88 +0.7
105,932 - GFF114 0.90 +0.5
105,973 + -0.7
105,981 - -1.0
105,982 - +0.9
105,982 - -2.4
106,031 - +0.1
106,101 + +0.5
106,118 + +0.1
106,128 - -0.3
108,377 + GFF115 0.86 -2.0
108,428 + GFF115 0.88 +0.1
108,475 - GFF115 0.90 -1.8
108,626 - -2.2
108,733 + -1.7
108,741 - -0.1
108,773 + -0.6
108,894 - -0.2
108,898 - -1.7
108,984 - GFF116 0.14 -0.2
108,992 + GFF116 0.15 +0.2
108,992 + GFF116 0.15 +0.9
109,026 + GFF116 0.17 +0.6
109,027 - GFF116 0.17 +1.3
109,034 - GFF116 0.18 -1.0
109,034 - GFF116 0.18 +0.0
109,034 - GFF116 0.18 -1.1
109,036 + GFF116 0.18 -0.4
109,044 - GFF116 0.18 +0.5
109,077 - GFF116 0.21 +1.4
109,079 + GFF116 0.21 -1.3
109,099 + GFF116 0.22 -0.5
109,099 + GFF116 0.22 -1.4
109,099 + GFF116 0.22 +0.3
109,099 + GFF116 0.22 +1.2
109,107 - GFF116 0.23 -0.7
109,107 - GFF116 0.23 -0.5
109,107 - GFF116 0.23 -1.9
109,107 - GFF116 0.23 +0.6
109,117 + GFF116 0.23 -0.4
109,128 + GFF116 0.24 +1.9
109,130 - GFF116 0.24 +0.7
109,146 - GFF116 0.25 +0.7
109,151 + GFF116 0.26 +0.3
109,187 + GFF116 0.28 -2.7
109,217 + GFF116 0.30 +1.0
109,249 + GFF116 0.32 -0.1
109,249 + GFF116 0.32 -0.6
109,257 - GFF116 0.33 +0.9
109,275 + GFF116 0.34 -1.2
109,287 - GFF116 0.35 -0.1
109,316 + GFF116 0.37 +1.3
109,360 + GFF116 0.40 +1.3
109,360 + GFF116 0.40 -1.3
109,363 - GFF116 0.40 -0.4
109,367 + GFF116 0.40 -2.8
109,436 + GFF116 0.45 -1.4
109,442 + GFF116 0.45 -0.5
109,442 + GFF116 0.45 -0.4
109,447 + GFF116 0.46 -0.0
109,450 - GFF116 0.46 +1.0
109,455 - GFF116 0.46 -0.3
109,455 - GFF116 0.46 +0.0
109,462 - GFF116 0.47 -0.1
109,478 - GFF116 0.48 -1.4
109,524 - GFF116 0.51 -0.9
109,525 - GFF116 0.51 -0.9
109,584 + GFF116 0.55 -0.7
109,592 - GFF116 0.55 +0.5
109,592 - GFF116 0.55 +0.1
109,604 + GFF116 0.56 -0.0
109,649 + GFF116 0.59 -0.3
109,689 + GFF116 0.62 -0.1
109,689 + GFF116 0.62 -0.2
109,689 + GFF116 0.62 +0.6
109,697 - GFF116 0.62 +0.8
109,720 + GFF116 0.64 -0.7
109,735 + GFF116 0.65 -0.8
109,735 + GFF116 0.65 -0.7
109,735 + GFF116 0.65 -0.1

Or see this region's nucleotide sequence