Strain Fitness in Sphingobium sp. HT1-2 around GFF1149

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,154,719	+		GFF1148	0.31	-3.4
1,154,719	+		GFF1148	0.31	-2.0
1,154,722	-		GFF1148	0.31	-2.5
1,154,722	-		GFF1148	0.31	-2.3
1,154,727	-		GFF1148	0.31	-2.1
1,154,727	-		GFF1148	0.31	-0.0
1,154,766	-		GFF1148	0.34	-2.5
1,154,807	+		GFF1148	0.37	-0.8
1,154,815	-		GFF1148	0.37	-2.8
1,154,815	-		GFF1148	0.37	-2.7
1,154,815	-		GFF1148	0.37	-2.5
1,154,844	-		GFF1148	0.39	-1.6
1,154,867	+		GFF1148	0.41	-1.2
1,154,868	-		GFF1148	0.41	-2.8
1,154,917	-		GFF1148	0.44	-0.9
1,154,927	+		GFF1148	0.45	-2.8
1,154,927	+		GFF1148	0.45	-1.8
1,154,935	-		GFF1148	0.46	-2.8
1,154,945	-		GFF1148	0.46	-1.6
1,154,954	-		GFF1148	0.47	-1.2
1,154,973	-		GFF1148	0.48	-3.4
1,155,025	-		GFF1148	0.52	-3.2
1,155,025	-		GFF1148	0.52	-1.9
1,155,044	-		GFF1148	0.53	-1.6
1,155,061	+		GFF1148	0.54	-2.2
1,155,095	+		GFF1148	0.57	-2.9
1,155,114	+		GFF1148	0.58	-1.8
1,155,164	+		GFF1148	0.62	-1.4
1,155,164	+		GFF1148	0.62	-0.9
1,155,167	-		GFF1148	0.62	-0.0
1,155,167	-		GFF1148	0.62	-2.5
1,155,200	+		GFF1148	0.64	-3.5
1,155,209	-		GFF1148	0.65	-2.4
1,155,257	+		GFF1148	0.68	-1.0
1,155,282	-		GFF1148	0.70	-2.4
1,155,402	+		GFF1148	0.78	-0.0
1,155,427	+		GFF1148	0.80	-2.6
1,155,438	+		GFF1148	0.81	+1.3
1,155,451	+		GFF1148	0.81	-3.3
1,155,451	+		GFF1148	0.81	-2.0
1,155,451	+		GFF1148	0.81	-2.3
1,155,459	-		GFF1148	0.82	-2.6
1,155,459	-		GFF1148	0.82	-2.2
1,155,459	-		GFF1148	0.82	-0.3
1,155,459	-		GFF1148	0.82	-0.9
1,155,460	+		GFF1148	0.82	-2.0
1,155,482	+		GFF1148	0.84	-2.0
1,155,489	+		GFF1148	0.84	-0.5
1,155,494	+		GFF1148	0.84	-2.0
1,155,497	-		GFF1148	0.85	-0.5
1,155,523	+		GFF1148	0.86	-1.7
1,155,528	+		GFF1148	0.87	-2.0
1,155,536	-		GFF1148	0.87	-1.5
1,155,619	+				-1.3
1,155,620	+				-1.4
1,155,650	+				-3.4
1,155,655	+				-2.0
1,155,655	+				-1.5
1,155,681	+				-2.5
1,155,691	+				-0.1
1,155,696	+				-2.5
1,155,715	+				-1.2
1,155,723	-				-0.2
1,155,795	+				-2.0
1,155,816	+				-2.2
1,155,824	+				-0.8
1,155,824	+				-1.9
1,155,824	+				-2.7
1,155,824	+				-2.2
1,155,829	+		GFF1149	0.10	-0.7
1,155,832	-		GFF1149	0.10	-2.1
1,155,832	-		GFF1149	0.10	-0.9
1,155,832	-		GFF1149	0.10	-2.6
1,155,836	+		GFF1149	0.11	-2.6
1,155,856	+		GFF1149	0.13	-2.9
1,155,868	+		GFF1149	0.14	-2.5
1,155,876	-		GFF1149	0.14	-2.8
1,155,890	-		GFF1149	0.16	-1.2
1,155,895	-		GFF1149	0.16	-2.1
1,155,916	-		GFF1149	0.18	-0.2
1,155,923	+		GFF1149	0.19	-2.8
1,155,946	+		GFF1149	0.21	-2.2
1,155,946	+		GFF1149	0.21	-2.7
1,155,946	+		GFF1149	0.21	-1.9
1,155,946	+		GFF1149	0.21	-2.8
1,155,946	+		GFF1149	0.21	-1.5
1,155,951	+		GFF1149	0.21	-0.7
1,155,951	+		GFF1149	0.21	-2.4
1,155,954	-		GFF1149	0.21	-1.5
1,155,954	-		GFF1149	0.21	-3.0
1,155,954	-		GFF1149	0.21	+1.9
1,155,954	-		GFF1149	0.21	-1.0
1,155,961	+		GFF1149	0.22	-2.1
1,155,969	-		GFF1149	0.23	-3.8
1,155,987	+		GFF1149	0.24	-2.8
1,156,005	-		GFF1149	0.26	-2.8
1,156,017	-		GFF1149	0.27	-1.2
1,156,017	-		GFF1149	0.27	-2.0
1,156,017	-		GFF1149	0.27	-1.6
1,156,024	+		GFF1149	0.28	-0.5
1,156,032	-		GFF1149	0.29	-0.9
1,156,036	-		GFF1149	0.29	-3.3
1,156,036	-		GFF1149	0.29	-2.9
1,156,037	-		GFF1149	0.29	-1.3
1,156,037	-		GFF1149	0.29	-0.3
1,156,056	-		GFF1149	0.31	-0.9
1,156,125	-		GFF1149	0.37	-2.6
1,156,164	+		GFF1149	0.40	-3.0
1,156,189	+		GFF1149	0.43	+0.5
1,156,194	+		GFF1149	0.43	-3.0
1,156,241	+		GFF1149	0.47	-3.4
1,156,281	-		GFF1149	0.51	-1.2
1,156,293	+		GFF1149	0.52	-1.0
1,156,296	-		GFF1149	0.52	-1.0
1,156,296	-		GFF1149	0.52	-2.4
1,156,301	-		GFF1149	0.53	+1.3
1,156,301	-		GFF1149	0.53	-0.5
1,156,353	+		GFF1149	0.58	-2.8
1,156,394	-		GFF1149	0.61	-1.9
1,156,458	-		GFF1149	0.67	-2.8
1,156,463	-		GFF1149	0.68	-2.0
1,156,467	+		GFF1149	0.68	-2.5
1,156,475	-		GFF1149	0.69	-1.8
1,156,486	+		GFF1149	0.70	-0.9
1,156,530	-		GFF1149	0.74	-2.5
1,156,546	+		GFF1149	0.75	-2.2
1,156,551	+		GFF1149	0.76	-2.0
1,156,552	+		GFF1149	0.76	-1.3
1,156,554	-		GFF1149	0.76	-0.7
1,156,577	+		GFF1149	0.78	-2.3
1,156,669	+		GFF1149	0.86	-2.1
1,156,679	+		GFF1149	0.87	-3.0
1,156,689	-		GFF1149	0.88	-2.7
1,156,777	-				-1.9
1,156,782	-				-0.6
1,156,787	-				-1.4
1,156,837	-				-3.1
1,156,952	+		GFF1150	0.13	-1.6
1,156,960	-		GFF1150	0.14	-2.1
1,156,961	-		GFF1150	0.14	+0.3
1,156,981	-		GFF1150	0.16	-1.5
1,157,072	+		GFF1150	0.26	-1.3
1,157,082	+		GFF1150	0.27	-1.7
1,157,087	+		GFF1150	0.27	+0.5
1,157,090	-		GFF1150	0.27	-0.0
1,157,121	-		GFF1150	0.31	-0.2
1,157,123	-		GFF1150	0.31	+1.0
1,157,135	-		GFF1150	0.32	+0.0
1,157,180	+		GFF1150	0.37	-2.7
1,157,180	-		GFF1150	0.37	+0.3
1,157,193	+		GFF1150	0.38	-2.0
1,157,224	-		GFF1150	0.41	+0.7
1,157,289	+		GFF1150	0.48	-0.9
1,157,308	+		GFF1150	0.50	-2.2
1,157,310	-		GFF1150	0.50	-1.6
1,157,315	+		GFF1150	0.50	-2.0
1,157,315	+		GFF1150	0.50	-0.9
1,157,323	-		GFF1150	0.51	+0.7
1,157,323	-		GFF1150	0.51	-0.6
1,157,330	-		GFF1150	0.52	-0.5
1,157,333	-		GFF1150	0.52	-0.7
1,157,359	+		GFF1150	0.55	-1.8
1,157,390	+		GFF1150	0.58	-1.4
1,157,445	+		GFF1150	0.64	-1.3
1,157,453	-		GFF1150	0.65	-2.7
1,157,453	-		GFF1150	0.65	-0.7
1,157,453	-		GFF1150	0.65	+0.7
1,157,481	-		GFF1150	0.67	+0.1
1,157,565	+		GFF1150	0.76	-1.3
1,157,573	-		GFF1150	0.77	+0.7
1,157,573	-		GFF1150	0.77	+0.3
1,157,580	-		GFF1150	0.78	-2.0
1,157,714	+				-1.7
1,157,720	+				-2.0
1,157,722	-				+1.2
1,157,722	-				-1.2
1,157,722	-				+0.3
1,157,733	+				-2.8
1,157,747	+				-0.3
1,157,769	-				-0.9
1,157,779	+				-2.0