Strain Fitness in Sphingobium sp. HT1-2 around GFF1120

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,121,915	+		GFF1119	0.19	+0.6
1,121,917	+		GFF1119	0.19	-1.5
1,121,923	-		GFF1119	0.20	-1.5
1,121,925	+		GFF1119	0.20	-0.3
1,121,925	+		GFF1119	0.20	-2.0
1,121,925	+		GFF1119	0.20	-0.8
1,121,925	+		GFF1119	0.20	-1.0
1,121,925	+		GFF1119	0.20	-0.3
1,121,925	+		GFF1119	0.20	-0.6
1,121,928	-		GFF1119	0.20	-0.6
1,121,932	+		GFF1119	0.20	-0.6
1,121,933	-		GFF1119	0.20	-0.9
1,121,933	-		GFF1119	0.20	+0.6
1,121,933	-		GFF1119	0.20	-1.0
1,121,933	-		GFF1119	0.20	-0.7
1,121,964	+		GFF1119	0.23	-2.5
1,121,978	-		GFF1119	0.24	-0.3
1,121,990	+		GFF1119	0.25	+1.2
1,121,990	+		GFF1119	0.25	-0.3
1,121,990	+		GFF1119	0.25	-0.4
1,121,990	+		GFF1119	0.25	+0.6
1,121,990	+		GFF1119	0.25	+0.4
1,121,998	-		GFF1119	0.26	-0.2
1,121,998	-		GFF1119	0.26	-0.2
1,121,998	-		GFF1119	0.26	-0.0
1,122,014	+		GFF1119	0.27	+0.9
1,122,016	+		GFF1119	0.27	-1.5
1,122,016	+		GFF1119	0.27	-0.8
1,122,016	+		GFF1119	0.27	-2.2
1,122,016	+		GFF1119	0.27	+0.6
1,122,016	+		GFF1119	0.27	-0.2
1,122,016	+		GFF1119	0.27	-1.1
1,122,016	+		GFF1119	0.27	-1.5
1,122,016	+		GFF1119	0.27	+0.7
1,122,021	+		GFF1119	0.28	+0.0
1,122,022	-		GFF1119	0.28	+0.7
1,122,022	-		GFF1119	0.28	-0.9
1,122,024	-		GFF1119	0.28	-1.7
1,122,024	-		GFF1119	0.28	+0.8
1,122,024	-		GFF1119	0.28	+0.1
1,122,024	-		GFF1119	0.28	+1.0
1,122,024	-		GFF1119	0.28	+0.9
1,122,024	-		GFF1119	0.28	-1.3
1,122,029	-		GFF1119	0.28	+0.9
1,122,029	-		GFF1119	0.28	+1.1
1,122,029	-		GFF1119	0.28	-2.2
1,122,042	+		GFF1119	0.29	-0.9
1,122,042	+		GFF1119	0.29	+0.3
1,122,079	-		GFF1119	0.33	-0.3
1,122,085	+		GFF1119	0.33	+0.2
1,122,085	+		GFF1119	0.33	+1.0
1,122,090	+		GFF1119	0.33	-1.4
1,122,118	+		GFF1119	0.36	-0.6
1,122,118	+		GFF1119	0.36	-0.1
1,122,118	+		GFF1119	0.36	+0.2
1,122,118	+		GFF1119	0.36	-0.3
1,122,118	+		GFF1119	0.36	-0.7
1,122,123	+		GFF1119	0.36	+0.2
1,122,123	+		GFF1119	0.36	-0.4
1,122,123	+		GFF1119	0.36	-0.6
1,122,126	-		GFF1119	0.36	-0.1
1,122,126	-		GFF1119	0.36	-0.3
1,122,126	-		GFF1119	0.36	+0.1
1,122,127	-		GFF1119	0.36	-0.2
1,122,127	-		GFF1119	0.36	+0.1
1,122,153	+		GFF1119	0.39	-0.2
1,122,153	+		GFF1119	0.39	-2.4
1,122,153	+		GFF1119	0.39	-0.1
1,122,153	+		GFF1119	0.39	-0.2
1,122,153	+		GFF1119	0.39	-2.4
1,122,153	+		GFF1119	0.39	+0.2
1,122,153	+		GFF1119	0.39	-0.2
1,122,153	+		GFF1119	0.39	-0.2
1,122,153	+		GFF1119	0.39	-1.0
1,122,161	-		GFF1119	0.39	+1.0
1,122,161	-		GFF1119	0.39	-0.4
1,122,161	-		GFF1119	0.39	-1.5
1,122,161	-		GFF1119	0.39	-1.2
1,122,161	-		GFF1119	0.39	+1.2
1,122,161	-		GFF1119	0.39	+0.3
1,122,161	-		GFF1119	0.39	-2.1
1,122,161	-		GFF1119	0.39	-1.1
1,122,161	-		GFF1119	0.39	-0.1
1,122,161	-		GFF1119	0.39	-2.4
1,122,161	-		GFF1119	0.39	+0.2
1,122,161	-		GFF1119	0.39	+1.0
1,122,161	-		GFF1119	0.39	-0.3
1,122,161	-		GFF1119	0.39	-0.3
1,122,161	-		GFF1119	0.39	+0.1
1,122,185	+		GFF1119	0.41	-0.7
1,122,201	+		GFF1119	0.43	+0.7
1,122,258	-		GFF1119	0.47	+0.7
1,122,264	-		GFF1119	0.48	+0.6
1,122,265	-		GFF1119	0.48	-0.2
1,122,270	-		GFF1119	0.48	-0.4
1,122,286	-		GFF1119	0.50	+0.9
1,122,286	-		GFF1119	0.50	+1.4
1,122,306	+		GFF1119	0.51	-0.1
1,122,321	-		GFF1119	0.53	-1.2
1,122,321	-		GFF1119	0.53	-1.3
1,122,332	+		GFF1119	0.54	+0.6
1,122,332	+		GFF1119	0.54	-0.0
1,122,337	+		GFF1119	0.54	+0.3
1,122,340	-		GFF1119	0.54	+0.6
1,122,340	-		GFF1119	0.54	+0.8
1,122,340	-		GFF1119	0.54	+0.1
1,122,344	+		GFF1119	0.55	-0.4
1,122,344	+		GFF1119	0.55	-0.6
1,122,344	+		GFF1119	0.55	+0.7
1,122,344	+		GFF1119	0.55	-0.2
1,122,344	+		GFF1119	0.55	+0.9
1,122,344	+		GFF1119	0.55	+0.7
1,122,345	-		GFF1119	0.55	+0.2
1,122,352	-		GFF1119	0.55	+0.8
1,122,352	-		GFF1119	0.55	-0.4
1,122,352	-		GFF1119	0.55	-0.1
1,122,352	-		GFF1119	0.55	-0.9
1,122,352	-		GFF1119	0.55	-0.2
1,122,360	+		GFF1119	0.56	-1.3
1,122,368	+		GFF1119	0.57	-0.0
1,122,392	-		GFF1119	0.59	-0.5
1,122,407	+		GFF1119	0.60	-0.8
1,122,407	+		GFF1119	0.60	+0.2
1,122,409	+		GFF1119	0.60	+0.2
1,122,423	+		GFF1119	0.61	+0.3
1,122,423	+		GFF1119	0.61	-2.4
1,122,423	+		GFF1119	0.61	-0.4
1,122,431	-		GFF1119	0.62	-1.6
1,122,431	-		GFF1119	0.62	-1.5
1,122,431	-		GFF1119	0.62	-0.1
1,122,451	-		GFF1119	0.64	+0.1
1,122,455	-		GFF1119	0.64	-0.8
1,122,456	-		GFF1119	0.64	-1.2
1,122,460	-		GFF1119	0.64	-0.4
1,122,483	+		GFF1119	0.66	+0.1
1,122,483	+		GFF1119	0.66	+0.3
1,122,490	+		GFF1119	0.67	+0.5
1,122,491	-		GFF1119	0.67	+0.7
1,122,493	-		GFF1119	0.67	+0.1
1,122,498	-		GFF1119	0.67	-1.1
1,122,498	-		GFF1119	0.67	-0.1
1,122,498	-		GFF1119	0.67	-0.2
1,122,498	-		GFF1119	0.67	+0.4
1,122,498	-		GFF1119	0.67	-0.4
1,122,498	-		GFF1119	0.67	+0.2
1,122,503	-		GFF1119	0.68	-0.2
1,122,504	+		GFF1119	0.68	-0.1
1,122,522	-		GFF1119	0.69	-0.3
1,122,524	-		GFF1119	0.70	-1.5
1,122,538	+		GFF1119	0.71	-2.1
1,122,546	-		GFF1119	0.71	-0.6
1,122,546	-		GFF1119	0.71	-1.5
1,122,566	+		GFF1119	0.73	+0.6
1,122,571	+		GFF1119	0.73	+1.4
1,122,576	+		GFF1119	0.74	-1.4
1,122,576	+		GFF1119	0.74	-0.0
1,122,576	+		GFF1119	0.74	+0.5
1,122,600	-		GFF1119	0.76	-1.2
1,122,604	-		GFF1119	0.76	-0.6
1,122,604	-		GFF1119	0.76	-0.3
1,122,604	-		GFF1119	0.76	-1.8
1,122,604	-		GFF1119	0.76	+0.9
1,122,663	-		GFF1119	0.81	+0.1
1,122,664	+		GFF1119	0.81	+0.2
1,122,670	+		GFF1119	0.82	-0.7
1,122,670	+		GFF1119	0.82	-1.1
1,122,672	-		GFF1119	0.82	-0.5
1,122,678	-		GFF1119	0.82	-0.9
1,122,679	-		GFF1119	0.82	-0.2
1,122,687	+		GFF1119	0.83	+0.9
1,122,687	+		GFF1119	0.83	+0.8
1,122,687	+		GFF1119	0.83	-0.7
1,122,687	+		GFF1119	0.83	+0.4
1,122,687	+		GFF1119	0.83	-0.0
1,122,687	+		GFF1119	0.83	-0.7
1,122,687	+		GFF1119	0.83	+0.4
1,122,695	-		GFF1119	0.84	-0.9
1,122,695	-		GFF1119	0.84	+0.2
1,122,695	-		GFF1119	0.84	+1.1
1,122,710	+		GFF1119	0.85	-0.4
1,122,718	-		GFF1119	0.86	-0.6
1,122,723	+		GFF1119	0.86	-0.2
1,122,728	+		GFF1119	0.87	+1.3
1,122,733	+		GFF1119	0.87	+0.1
1,122,760	-		GFF1119	0.89	+0.9
1,122,764	+		GFF1119	0.90	+0.8
1,122,772	-				-0.6
1,122,774	+				-0.3
1,122,774	+				-0.6
1,122,777	-				-1.4
1,122,782	-				-0.2
1,122,783	+				-0.1
1,122,784	-				-0.3
1,122,794	+				-1.5
1,122,802	-				+0.1
1,122,802	-				-0.7
1,122,802	-				-2.7
1,122,802	-				-0.9
1,122,829	+				-0.2
1,122,829	+				-3.0
1,122,843	+				-0.8
1,122,859	+				-0.8
1,122,862	+				-0.0
1,122,869	+				+0.4
1,122,869	+				+0.4
1,122,869	+				+0.4
1,122,869	+				-2.9
1,122,870	-				-1.0
1,122,870	-				-0.7
1,122,870	-				-0.5
1,122,875	+				-0.0
1,122,875	+				+0.9
1,122,875	+				+0.0
1,122,875	+				+0.8
1,122,875	+				+0.8
1,122,875	+				-0.3
1,122,877	-				-1.3
1,122,877	-				-0.4
1,122,877	-				-0.8
1,122,877	-				-0.5
1,122,877	-				+1.0
1,122,877	-				-0.5
1,122,877	-				-0.6
1,122,883	-				-0.9
1,122,890	+				-0.7
1,122,890	+				+0.3
1,122,893	-				+1.1
1,122,897	+				+0.3
1,122,897	+				+0.2
1,122,897	+				+1.0
1,122,897	+				+0.5
1,122,897	+				-0.3
1,122,897	+				-0.1
1,122,897	+				+0.9
1,122,902	+				-0.8
1,122,902	+				-0.8
1,122,903	+				+0.6
1,122,903	+				-2.5
1,122,903	+				+0.3
1,122,903	+				-1.6
1,122,903	+				-0.7
1,122,905	-				-2.9
1,122,905	-				+0.3
1,122,905	-				+0.8
1,122,905	-				-0.6
1,122,911	-				+0.1
1,122,911	-				+0.6
1,122,911	-				-1.4
1,122,919	+				+0.0
1,122,934	-				+0.1
1,122,937	+				+0.6
1,122,937	-				-0.2
1,122,950	-				+0.2
1,122,956	+				-0.7
1,122,964	-				-0.9
1,122,964	-				-0.7
1,122,966	+				-1.0
1,122,974	-				-0.3
1,122,986	+		GFF1120	0.11	+0.6
1,122,986	+		GFF1120	0.11	+0.5
1,123,011	-		GFF1120	0.14	+0.1
1,123,015	-		GFF1120	0.14	+0.4
1,123,023	-		GFF1120	0.15	+1.9
1,123,026	+		GFF1120	0.16	+0.3
1,123,031	-		GFF1120	0.16	+1.5
1,123,061	-		GFF1120	0.20	-1.4
1,123,076	+		GFF1120	0.22	+0.9
1,123,076	+		GFF1120	0.22	-0.4
1,123,076	+		GFF1120	0.22	-0.3
1,123,076	+		GFF1120	0.22	+0.3
1,123,084	-		GFF1120	0.23	-0.8
1,123,084	-		GFF1120	0.23	-1.3
1,123,084	-		GFF1120	0.23	+0.5
1,123,089	-		GFF1120	0.24	-0.2
1,123,091	+		GFF1120	0.24	+0.1
1,123,098	+		GFF1120	0.25	-0.1
1,123,099	-		GFF1120	0.25	-0.9
1,123,101	+		GFF1120	0.25	+0.0
1,123,109	-		GFF1120	0.26	-0.2
1,123,122	+		GFF1120	0.28	+0.8
1,123,133	+		GFF1120	0.29	-0.0
1,123,140	+		GFF1120	0.30	-0.7
1,123,140	-		GFF1120	0.30	-2.3
1,123,148	-		GFF1120	0.31	+0.2
1,123,148	-		GFF1120	0.31	+0.7
1,123,148	-		GFF1120	0.31	-1.6
1,123,148	-		GFF1120	0.31	-0.6
1,123,173	+		GFF1120	0.34	+1.2
1,123,218	+		GFF1120	0.40	+0.4
1,123,218	+		GFF1120	0.40	-2.2
1,123,218	+		GFF1120	0.40	+1.5
1,123,226	-		GFF1120	0.41	+0.4
1,123,248	+		GFF1120	0.44	-0.9
1,123,256	-		GFF1120	0.45	+0.7
1,123,260	+		GFF1120	0.45	+0.0
1,123,260	+		GFF1120	0.45	-0.9
1,123,260	+		GFF1120	0.45	-0.6
1,123,260	+		GFF1120	0.45	-0.6
1,123,267	+		GFF1120	0.46	-0.2
1,123,267	+		GFF1120	0.46	-0.8
1,123,268	-		GFF1120	0.46	+0.1
1,123,268	-		GFF1120	0.46	-0.9
1,123,272	+		GFF1120	0.47	-0.6
1,123,272	+		GFF1120	0.47	+1.4
1,123,282	-		GFF1120	0.48	+0.8
1,123,282	-		GFF1120	0.48	-0.2
1,123,287	-		GFF1120	0.49	+0.6
1,123,292	+		GFF1120	0.49	-1.5
1,123,300	-		GFF1120	0.50	-2.2
1,123,300	-		GFF1120	0.50	-0.1
1,123,316	+		GFF1120	0.52	+0.5
1,123,334	-		GFF1120	0.55	+1.4
1,123,336	+		GFF1120	0.55	-1.1
1,123,354	+		GFF1120	0.57	+0.8
1,123,354	+		GFF1120	0.57	-0.6
1,123,362	-		GFF1120	0.58	+0.4
1,123,408	-		GFF1120	0.64	-0.0
1,123,413	-		GFF1120	0.65	-0.3
1,123,413	-		GFF1120	0.65	-0.1
1,123,423	+		GFF1120	0.66	+0.3
1,123,426	-		GFF1120	0.66	-0.1
1,123,428	+		GFF1120	0.66	-0.8
1,123,431	-		GFF1120	0.67	+1.0
1,123,436	-		GFF1120	0.67	+0.0
1,123,441	-		GFF1120	0.68	-1.4
1,123,457	+		GFF1120	0.70	-1.0
1,123,463	+		GFF1120	0.71	-0.8
1,123,468	+		GFF1120	0.71	-0.2
1,123,469	+		GFF1120	0.72	+1.1
1,123,471	-		GFF1120	0.72	+0.8
1,123,471	-		GFF1120	0.72	-0.2
1,123,473	+		GFF1120	0.72	-0.0
1,123,476	-		GFF1120	0.72	+0.4
1,123,476	-		GFF1120	0.72	+0.4
1,123,476	-		GFF1120	0.72	-0.5
1,123,476	-		GFF1120	0.72	-3.4
1,123,476	-		GFF1120	0.72	+0.2
1,123,479	+		GFF1120	0.73	-0.1
1,123,479	+		GFF1120	0.73	-0.5
1,123,487	-		GFF1120	0.74	-0.1
1,123,499	+		GFF1120	0.75	-0.6
1,123,512	-		GFF1120	0.77	-1.3
1,123,531	+		GFF1120	0.79	-2.0
1,123,531	+		GFF1120	0.79	-0.7
1,123,537	+		GFF1120	0.80	-2.3
1,123,539	-		GFF1120	0.80	-0.2
1,123,545	-		GFF1120	0.81	+1.4
1,123,545	-		GFF1120	0.81	-1.3
1,123,545	-		GFF1120	0.81	+0.6
1,123,548	+		GFF1120	0.82	+0.3
1,123,548	+		GFF1120	0.82	-0.6
1,123,551	-		GFF1120	0.82	-1.2
1,123,553	+		GFF1120	0.82	-0.2
1,123,554	+		GFF1120	0.82	-1.4
1,123,572	+		GFF1120	0.85	-0.2
1,123,572	+		GFF1120	0.85	-1.5
1,123,575	-		GFF1120	0.85	+0.6
1,123,580	-		GFF1120	0.86	-0.1
1,123,580	-		GFF1120	0.86	-2.5
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1,123,607	-		GFF1120	0.89	+0.8
1,123,609	+		GFF1120	0.89	+0.3
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1,123,631	+				+0.8
1,123,631	+				-1.7
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1,123,648	-				-2.5
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1,123,649	+				+0.9
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1,123,654	+				+0.1
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1,123,657	-				-3.3
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