Strain Fitness in Sphingobium sp. HT1-2 around GFF1117

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,119,023	+				-1.3
1,119,029	-				-0.4
1,119,029	-				-0.1
1,119,031	-				-1.0
1,119,031	-				-1.7
1,119,031	-				+0.5
1,119,031	-				-0.1
1,119,036	-				-0.9
1,119,036	-				+0.3
1,119,051	-				+1.6
1,119,054	-				+0.2
1,119,055	+				-0.5
1,119,067	-				-0.7
1,119,078	-				-1.7
1,119,078	-				+1.0
1,119,119	-		GFF1116	0.12	-2.5
1,119,133	+		GFF1116	0.14	-0.6
1,119,141	+		GFF1116	0.14	+0.8
1,119,146	+		GFF1116	0.15	+1.6
1,119,146	+		GFF1116	0.15	-0.4
1,119,146	+		GFF1116	0.15	+0.1
1,119,146	+		GFF1116	0.15	-0.1
1,119,146	+		GFF1116	0.15	-2.6
1,119,146	+		GFF1116	0.15	+0.3
1,119,146	+		GFF1116	0.15	+0.9
1,119,146	+		GFF1116	0.15	+0.4
1,119,154	-		GFF1116	0.16	+0.2
1,119,154	-		GFF1116	0.16	-0.3
1,119,154	-		GFF1116	0.16	-0.1
1,119,154	-		GFF1116	0.16	+0.2
1,119,154	-		GFF1116	0.16	-0.5
1,119,156	+		GFF1116	0.16	-1.9
1,119,157	+		GFF1116	0.16	-0.6
1,119,164	-		GFF1116	0.17	-0.9
1,119,171	+		GFF1116	0.17	-0.3
1,119,171	+		GFF1116	0.17	+0.7
1,119,171	+		GFF1116	0.17	-1.0
1,119,179	-		GFF1116	0.18	+0.4
1,119,189	-		GFF1116	0.19	-1.4
1,119,193	+		GFF1116	0.20	-2.1
1,119,198	+		GFF1116	0.20	-0.6
1,119,204	-		GFF1116	0.21	-1.6
1,119,206	-		GFF1116	0.21	+0.5
1,119,237	+		GFF1116	0.24	-1.5
1,119,237	+		GFF1116	0.24	-1.7
1,119,237	+		GFF1116	0.24	-1.5
1,119,237	+		GFF1116	0.24	-0.1
1,119,245	-		GFF1116	0.25	-0.7
1,119,245	-		GFF1116	0.25	+0.9
1,119,245	-		GFF1116	0.25	+1.8
1,119,245	-		GFF1116	0.25	-2.0
1,119,253	-		GFF1116	0.26	+0.4
1,119,262	+		GFF1116	0.26	-1.1
1,119,270	-		GFF1116	0.27	+1.3
1,119,273	+		GFF1116	0.28	+0.4
1,119,274	-		GFF1116	0.28	-0.4
1,119,281	-		GFF1116	0.28	+0.9
1,119,281	-		GFF1116	0.28	-1.5
1,119,281	-		GFF1116	0.28	+0.2
1,119,289	+		GFF1116	0.29	-0.1
1,119,289	+		GFF1116	0.29	+0.9
1,119,289	+		GFF1116	0.29	-3.1
1,119,292	-		GFF1116	0.29	-0.6
1,119,296	-		GFF1116	0.30	+0.0
1,119,297	-		GFF1116	0.30	-0.9
1,119,300	+		GFF1116	0.30	-0.8
1,119,308	-		GFF1116	0.31	-1.0
1,119,308	-		GFF1116	0.31	-0.2
1,119,320	-		GFF1116	0.32	-1.3
1,119,325	+		GFF1116	0.33	-0.4
1,119,326	-		GFF1116	0.33	-0.1
1,119,331	-		GFF1116	0.33	-2.7
1,119,333	-		GFF1116	0.34	-2.3
1,119,333	-		GFF1116	0.34	-0.3
1,119,344	+		GFF1116	0.35	+0.4
1,119,411	+		GFF1116	0.41	+0.8
1,119,416	+		GFF1116	0.42	-0.6
1,119,419	-		GFF1116	0.42	-1.8
1,119,435	+		GFF1116	0.44	-1.3
1,119,443	-		GFF1116	0.45	-1.4
1,119,448	+		GFF1116	0.45	-2.5
1,119,448	+		GFF1116	0.45	-0.1
1,119,458	-		GFF1116	0.46	+0.5
1,119,458	-		GFF1116	0.46	-0.4
1,119,478	+		GFF1116	0.48	-1.5
1,119,486	-		GFF1116	0.49	-0.4
1,119,486	-		GFF1116	0.49	-0.2
1,119,486	-		GFF1116	0.49	-0.1
1,119,488	+		GFF1116	0.49	+0.5
1,119,496	-		GFF1116	0.50	-0.7
1,119,501	+		GFF1116	0.50	-0.6
1,119,501	+		GFF1116	0.50	-1.4
1,119,505	+		GFF1116	0.51	-0.1
1,119,509	-		GFF1116	0.51	-0.4
1,119,509	-		GFF1116	0.51	-2.5
1,119,509	-		GFF1116	0.51	-2.3
1,119,512	+		GFF1116	0.51	+0.6
1,119,512	+		GFF1116	0.51	+0.9
1,119,512	+		GFF1116	0.51	+0.1
1,119,512	+		GFF1116	0.51	+1.0
1,119,514	-		GFF1116	0.52	+0.5
1,119,514	-		GFF1116	0.52	+0.7
1,119,519	-		GFF1116	0.52	-0.2
1,119,520	-		GFF1116	0.52	+1.3
1,119,520	-		GFF1116	0.52	-0.8
1,119,520	-		GFF1116	0.52	+0.7
1,119,520	-		GFF1116	0.52	-0.1
1,119,523	+		GFF1116	0.53	-0.1
1,119,536	+		GFF1116	0.54	+1.0
1,119,536	+		GFF1116	0.54	-1.2
1,119,536	+		GFF1116	0.54	-0.3
1,119,546	+		GFF1116	0.55	-0.9
1,119,555	+		GFF1116	0.56	+1.2
1,119,556	+		GFF1116	0.56	+0.6
1,119,556	+		GFF1116	0.56	+0.1
1,119,556	+		GFF1116	0.56	-1.1
1,119,556	+		GFF1116	0.56	+1.0
1,119,556	+		GFF1116	0.56	-2.6
1,119,559	-		GFF1116	0.56	-1.4
1,119,559	-		GFF1116	0.56	-0.4
1,119,564	-		GFF1116	0.57	+0.0
1,119,564	-		GFF1116	0.57	-0.4
1,119,576	+		GFF1116	0.58	+1.4
1,119,609	+		GFF1116	0.61	-1.3
1,119,615	-		GFF1116	0.62	-0.2
1,119,618	-		GFF1116	0.62	+0.8
1,119,634	+		GFF1116	0.64	+0.6
1,119,646	+		GFF1116	0.65	+0.8
1,119,659	-		GFF1116	0.66	-1.8
1,119,660	-		GFF1116	0.66	-2.7
1,119,677	+		GFF1116	0.68	-0.4
1,119,677	+		GFF1116	0.68	-1.3
1,119,677	+		GFF1116	0.68	+0.6
1,119,677	+		GFF1116	0.68	-0.8
1,119,677	+		GFF1116	0.68	-1.1
1,119,677	+		GFF1116	0.68	-0.3
1,119,677	+		GFF1116	0.68	+0.3
1,119,677	+		GFF1116	0.68	-0.8
1,119,681	-		GFF1116	0.68	+0.0
1,119,685	-		GFF1116	0.69	-1.1
1,119,685	-		GFF1116	0.69	-0.4
1,119,685	-		GFF1116	0.69	+0.6
1,119,685	-		GFF1116	0.69	-0.5
1,119,687	+		GFF1116	0.69	-0.2
1,119,706	-		GFF1116	0.71	-0.4
1,119,719	+		GFF1116	0.72	+0.2
1,119,725	+		GFF1116	0.73	-0.6
1,119,727	-		GFF1116	0.73	+0.8
1,119,727	-		GFF1116	0.73	+0.1
1,119,739	+		GFF1116	0.74	-0.5
1,119,746	+		GFF1116	0.75	+1.1
1,119,747	-		GFF1116	0.75	-0.1
1,119,752	-		GFF1116	0.75	-1.8
1,119,754	-		GFF1116	0.76	-0.9
1,119,754	-		GFF1116	0.76	-1.1
1,119,766	+		GFF1116	0.77	+0.1
1,119,769	+		GFF1116	0.77	+0.9
1,119,772	+		GFF1116	0.77	-0.5
1,119,782	-		GFF1116	0.78	-1.7
1,119,787	-		GFF1116	0.79	-0.1
1,119,806	+		GFF1116	0.81	-0.7
1,119,806	+		GFF1116	0.81	-1.3
1,119,812	-		GFF1116	0.81	-1.4
1,119,812	-		GFF1116	0.81	-1.0
1,119,841	+		GFF1116	0.84	+0.4
1,119,847	-		GFF1116	0.85	+0.4
1,119,848	-		GFF1116	0.85	+0.9
1,119,849	-		GFF1116	0.85	-1.3
1,119,851	+		GFF1116	0.85	+0.1
1,119,876	+		GFF1116	0.88	+0.8
1,119,898	-				-0.2
1,119,900	+				-0.0
1,119,910	+				-0.9
1,119,910	+				+0.1
1,119,910	+				+0.5
1,119,918	-				-0.6
1,119,918	-				-1.3
1,119,918	-				-1.2
1,119,918	-				-0.8
1,119,918	-				-0.9
1,119,924	+				-0.6
1,119,948	-				-0.4
1,119,959	+				-0.4
1,119,968	+				+0.6
1,119,968	+				-0.8
1,119,981	+				-0.7
1,119,990	+				-0.4
1,119,990	+				+0.1
1,119,996	+				-1.1
1,119,996	+				-0.6
1,119,996	+				-0.4
1,120,004	-				+0.4
1,120,004	-				+0.0
1,120,004	-				+0.7
1,120,004	-				-0.3
1,120,004	-				+0.8
1,120,004	-				-1.2
1,120,006	+				-0.6
1,120,022	-				-0.0
1,120,036	-				-1.5
1,120,058	-				+0.4
1,120,080	+		GFF1117	0.10	-0.1
1,120,088	-		GFF1117	0.12	-0.9
1,120,098	+		GFF1117	0.14	-0.1
1,120,108	+		GFF1117	0.16	-0.4
1,120,108	+		GFF1117	0.16	+0.7
1,120,108	+		GFF1117	0.16	-0.4
1,120,116	-		GFF1117	0.17	+1.1
1,120,116	-		GFF1117	0.17	-0.4
1,120,118	+		GFF1117	0.17	-1.3
1,120,126	-		GFF1117	0.19	-0.4
1,120,153	-		GFF1117	0.24	-0.7
1,120,155	+		GFF1117	0.24	-0.1
1,120,155	+		GFF1117	0.24	-0.1
1,120,165	+		GFF1117	0.26	+0.3
1,120,173	-		GFF1117	0.27	-0.1
1,120,173	-		GFF1117	0.27	+0.0
1,120,185	-		GFF1117	0.30	-0.8
1,120,209	+		GFF1117	0.34	+0.5
1,120,209	+		GFF1117	0.34	-0.3
1,120,209	+		GFF1117	0.34	+0.1
1,120,209	+		GFF1117	0.34	+1.0
1,120,211	-		GFF1117	0.34	-0.6
1,120,217	-		GFF1117	0.36	+0.6
1,120,244	+		GFF1117	0.40	-2.6
1,120,264	+		GFF1117	0.44	+0.7
1,120,266	-		GFF1117	0.45	+0.1
1,120,297	+		GFF1117	0.50	-1.6
1,120,303	+		GFF1117	0.51	+0.2
1,120,320	+		GFF1117	0.54	-1.0
1,120,321	-		GFF1117	0.55	-0.2
1,120,353	-		GFF1117	0.60	+0.3
1,120,369	+		GFF1117	0.63	+0.7
1,120,428	+		GFF1117	0.74	-1.2
1,120,431	-		GFF1117	0.75	+0.3
1,120,433	+		GFF1117	0.75	+0.6
1,120,433	+		GFF1117	0.75	-1.1
1,120,433	+		GFF1117	0.75	-0.1
1,120,433	+		GFF1117	0.75	-3.0
1,120,433	+		GFF1117	0.75	+0.0
1,120,433	+		GFF1117	0.75	-0.1
1,120,433	+		GFF1117	0.75	-1.3
1,120,441	-		GFF1117	0.77	-1.6
1,120,441	-		GFF1117	0.77	-0.7
1,120,441	-		GFF1117	0.77	-1.1
1,120,441	-		GFF1117	0.77	+0.2
1,120,441	-		GFF1117	0.77	-1.4
1,120,441	-		GFF1117	0.77	+0.3
1,120,441	-		GFF1117	0.77	+0.5
1,120,441	-		GFF1117	0.77	-0.3
1,120,441	-		GFF1117	0.77	-0.9
1,120,441	-		GFF1117	0.77	-1.6
1,120,454	-		GFF1117	0.79	-1.7
1,120,459	+		GFF1117	0.80	-1.3
1,120,477	-		GFF1117	0.83	-0.1
1,120,519	+				+0.6
1,120,572	+				-2.5
1,120,575	-				+0.3
1,120,580	-				-0.2
1,120,585	-				-0.1
1,120,585	-				+0.1
1,120,589	-				+0.1
1,120,592	+				-0.5
1,120,600	-				+0.1
1,120,600	-				-0.7
1,120,600	-				-0.6
1,120,600	-				-0.8
1,120,607	+				+1.5
1,120,607	+				-1.5
1,120,607	+				+0.1
1,120,615	-				-0.8
1,120,615	-				-0.6
1,120,615	-				+0.5
1,120,615	-				-1.1
1,120,615	-				+0.2
1,120,615	-				-1.1
1,120,615	-				-0.5
1,120,627	+				-0.6
1,120,629	+				+0.4
1,120,635	-				-0.6
1,120,638	+				+0.7
1,120,641	+				-0.1
1,120,646	+				+0.7
1,120,646	-				+1.0
1,120,651	+				-0.1
1,120,654	-				-0.8
1,120,654	-				+1.3
1,120,659	+				+0.7
1,120,659	+				-0.4
1,120,659	+				-0.8
1,120,667	-				-1.3
1,120,685	+				+0.7
1,120,685	+				-1.0
1,120,701	+				-1.1
1,120,701	+				+1.5
1,120,701	+				+0.7
1,120,701	+				-0.3
1,120,701	+				+0.2
1,120,701	+				+0.4
1,120,701	+				+0.3
1,120,701	+				+1.4
1,120,704	-				+0.0
1,120,704	-				-0.0
1,120,706	+				+0.9
1,120,706	+				-0.5
1,120,706	+				-0.2
1,120,706	+				+0.3
1,120,706	+				-1.9
1,120,706	+				-1.4
1,120,706	+				-1.3
1,120,709	-				-2.5
1,120,709	-				+0.2
1,120,709	-				-0.2
1,120,709	-				+0.6
1,120,711	+				-1.1
1,120,714	-				+0.5
1,120,714	-				+1.2
1,120,714	-				-0.5
1,120,714	-				-1.1
1,120,714	-				-1.1
1,120,719	-				-1.3
1,120,719	-				+0.0
1,120,720	+				+0.0
1,120,726	+				-0.8
1,120,726	+				+0.2
1,120,734	-				+0.4
1,120,734	-				-1.0
1,120,734	-				+0.1
1,120,753	-				-0.3
1,120,781	+				+0.2
1,120,789	-				-0.4
1,120,791	-				+1.2
1,120,793	+				+1.5
1,120,819	+				-1.0
1,120,819	+				-0.9
1,120,819	+				+0.2
1,120,819	+				-2.8
1,120,819	+				-0.1
1,120,819	+				+0.9
1,120,819	+				+0.2
1,120,819	+				-0.7
1,120,820	+				+0.3
1,120,827	-				+0.4
1,120,827	-				-1.4
1,120,827	-				+0.7
1,120,827	-				-0.8
1,120,827	-				-1.4
1,120,827	-				-0.4
1,120,827	-				-0.5
1,120,828	-				-0.0
1,120,828	-				-0.3
1,120,828	-				-1.5
1,120,830	+				+0.7
1,120,838	-				+0.1
1,120,838	-				+0.9
1,120,838	-				+1.1
1,120,853	+		GFF1118	0.11	-0.1
1,120,868	+		GFF1118	0.12	+0.3
1,120,868	+		GFF1118	0.12	+1.4
1,120,906	+		GFF1118	0.16	-2.0
1,120,906	+		GFF1118	0.16	-1.4
1,120,906	+		GFF1118	0.16	-2.6
1,120,906	+		GFF1118	0.16	-0.0
1,120,906	+		GFF1118	0.16	-0.7
1,120,906	+		GFF1118	0.16	+0.1
1,120,906	+		GFF1118	0.16	+0.1
1,120,906	+		GFF1118	0.16	-0.1
1,120,906	+		GFF1118	0.16	+1.5
1,120,906	+		GFF1118	0.16	-2.0
1,120,906	+		GFF1118	0.16	+0.1
1,120,911	+		GFF1118	0.17	+0.3
1,120,914	-		GFF1118	0.17	-0.3
1,120,914	-		GFF1118	0.17	-1.6
1,120,914	-		GFF1118	0.17	-1.4
1,120,914	-		GFF1118	0.17	-2.1
1,120,914	-		GFF1118	0.17	+0.4
1,120,914	-		GFF1118	0.17	-1.5
1,120,914	-		GFF1118	0.17	+0.4
1,120,921	+		GFF1118	0.18	-0.1
1,120,922	+		GFF1118	0.18	-0.4
1,120,927	+		GFF1118	0.18	-0.4
1,120,930	+		GFF1118	0.19	+0.7
1,120,930	+		GFF1118	0.19	+0.1
1,120,930	+		GFF1118	0.19	-0.3
1,120,930	-		GFF1118	0.19	-0.6
1,120,940	+		GFF1118	0.20	+1.1
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