Strain Fitness in Sphingobium sp. HT1-2 around GFF1089

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,091,240	+		GFF1086	0.63	-0.5
1,091,248	-		GFF1086	0.67	+0.9
1,091,251	+		GFF1086	0.69	+0.0
1,091,256	+		GFF1086	0.71	+0.1
1,091,259	-		GFF1086	0.72	+0.1
1,091,259	-		GFF1086	0.72	+0.4
1,091,264	-		GFF1086	0.75	+1.0
1,091,272	+		GFF1086	0.78	+0.4
1,091,280	-		GFF1086	0.82	-0.4
1,091,290	+		GFF1086	0.87	+0.8
1,091,300	-				-0.6
1,091,326	-				+0.5
1,091,328	+				+0.4
1,091,328	+				-1.3
1,091,328	+				-1.0
1,091,336	-				-0.0
1,091,336	-				-0.1
1,091,360	-				+0.5
1,091,376	+				+0.6
1,091,381	+				+0.1
1,091,385	-				-0.2
1,091,395	-				+0.5
1,091,396	-				-1.2
1,091,396	-				-0.9
1,091,396	-				-2.0
1,091,396	-				-0.6
1,091,456	-				+0.8
1,091,473	-				+0.3
1,091,491	+				-0.5
1,091,496	+				+0.1
1,091,496	+				+0.8
1,091,496	+				-2.1
1,091,496	+				+0.6
1,091,496	+				-1.5
1,091,501	+				+0.7
1,091,501	+				+0.3
1,091,501	+				+0.8
1,091,501	+				+0.7
1,091,501	+				-0.3
1,091,504	-				-0.4
1,091,504	-				-0.3
1,091,508	+				+0.5
1,091,508	+				-0.7
1,091,508	+				+1.2
1,091,508	+				+0.4
1,091,508	+				-0.3
1,091,509	-				-0.5
1,091,509	-				+0.2
1,091,509	-				-0.3
1,091,514	-				-0.2
1,091,514	-				-0.2
1,091,516	-				-0.5
1,091,516	-				+0.3
1,091,516	-				+1.3
1,091,523	-		GFF1087	0.11	-1.8
1,091,523	-		GFF1087	0.11	-0.1
1,091,532	+		GFF1087	0.13	-1.6
1,091,532	+		GFF1087	0.13	+0.3
1,091,535	-		GFF1087	0.14	+0.2
1,091,537	+		GFF1087	0.14	-0.3
1,091,537	+		GFF1087	0.14	-0.4
1,091,537	+		GFF1087	0.14	-0.3
1,091,537	+		GFF1087	0.14	-0.1
1,091,537	+		GFF1087	0.14	+0.1
1,091,537	+		GFF1087	0.14	-0.8
1,091,537	+		GFF1087	0.14	-0.6
1,091,537	+		GFF1087	0.14	+0.1
1,091,537	+		GFF1087	0.14	+1.1
1,091,537	+		GFF1087	0.14	-0.8
1,091,537	+		GFF1087	0.14	-0.4
1,091,537	+		GFF1087	0.14	-0.1
1,091,540	-		GFF1087	0.15	-2.0
1,091,543	+		GFF1087	0.16	+0.9
1,091,545	-		GFF1087	0.16	+0.2
1,091,545	-		GFF1087	0.16	-2.1
1,091,545	-		GFF1087	0.16	+1.6
1,091,545	-		GFF1087	0.16	-0.3
1,091,551	+		GFF1087	0.17	+0.4
1,091,559	-		GFF1087	0.19	+0.9
1,091,575	+		GFF1087	0.22	-0.9
1,091,575	+		GFF1087	0.22	-0.1
1,091,613	+		GFF1087	0.30	-0.6
1,091,613	+		GFF1087	0.30	-0.6
1,091,613	+		GFF1087	0.30	+1.2
1,091,613	+		GFF1087	0.30	+0.9
1,091,613	+		GFF1087	0.30	-2.3
1,091,613	+		GFF1087	0.30	-1.1
1,091,613	+		GFF1087	0.30	-0.4
1,091,613	+		GFF1087	0.30	-0.8
1,091,613	+		GFF1087	0.30	-1.5
1,091,621	-		GFF1087	0.32	-0.7
1,091,621	-		GFF1087	0.32	+0.4
1,091,621	-		GFF1087	0.32	-1.2
1,091,621	-		GFF1087	0.32	+1.6
1,091,621	-		GFF1087	0.32	+0.8
1,091,621	-		GFF1087	0.32	-1.3
1,091,621	-		GFF1087	0.32	-0.8
1,091,621	-		GFF1087	0.32	-0.2
1,091,621	-		GFF1087	0.32	+0.3
1,091,621	-		GFF1087	0.32	-1.8
1,091,621	-		GFF1087	0.32	+0.3
1,091,621	-		GFF1087	0.32	-0.3
1,091,621	-		GFF1087	0.32	+0.3
1,091,621	-		GFF1087	0.32	+0.1
1,091,621	-		GFF1087	0.32	-0.5
1,091,623	+		GFF1087	0.32	-1.6
1,091,623	+		GFF1087	0.32	-0.1
1,091,623	+		GFF1087	0.32	-0.2
1,091,623	+		GFF1087	0.32	+0.8
1,091,623	+		GFF1087	0.32	-0.2
1,091,623	+		GFF1087	0.32	-1.2
1,091,623	+		GFF1087	0.32	-1.6
1,091,623	+		GFF1087	0.32	+0.8
1,091,623	+		GFF1087	0.32	-2.1
1,091,623	+		GFF1087	0.32	-0.8
1,091,623	+		GFF1087	0.32	+0.9
1,091,623	+		GFF1087	0.32	-0.1
1,091,623	+		GFF1087	0.32	+0.1
1,091,623	+		GFF1087	0.32	+0.6
1,091,623	+		GFF1087	0.32	-2.1
1,091,623	+		GFF1087	0.32	-0.2
1,091,623	+		GFF1087	0.32	+0.1
1,091,623	+		GFF1087	0.32	-0.3
1,091,623	+		GFF1087	0.32	+0.0
1,091,623	+		GFF1087	0.32	+0.6
1,091,623	+		GFF1087	0.32	-0.3
1,091,631	-		GFF1087	0.34	-0.3
1,091,631	-		GFF1087	0.34	-0.5
1,091,631	-		GFF1087	0.34	+0.2
1,091,631	-		GFF1087	0.34	+0.3
1,091,631	-		GFF1087	0.34	+0.0
1,091,631	-		GFF1087	0.34	-0.3
1,091,631	-		GFF1087	0.34	+1.3
1,091,631	-		GFF1087	0.34	+0.4
1,091,631	-		GFF1087	0.34	+0.5
1,091,631	-		GFF1087	0.34	+1.5
1,091,631	-		GFF1087	0.34	+0.4
1,091,631	-		GFF1087	0.34	+0.3
1,091,631	-		GFF1087	0.34	-1.3
1,091,631	-		GFF1087	0.34	+1.4
1,091,631	-		GFF1087	0.34	+1.3
1,091,631	-		GFF1087	0.34	-0.8
1,091,631	-		GFF1087	0.34	+0.3
1,091,631	-		GFF1087	0.34	-0.5
1,091,631	-		GFF1087	0.34	+0.9
1,091,631	-		GFF1087	0.34	+0.3
1,091,639	-		GFF1087	0.36	-0.3
1,091,639	-		GFF1087	0.36	-0.6
1,091,648	+		GFF1087	0.38	-0.3
1,091,648	+		GFF1087	0.38	-1.3
1,091,648	+		GFF1087	0.38	+0.8
1,091,657	+		GFF1087	0.40	-0.3
1,091,661	-		GFF1087	0.41	+0.3
1,091,714	-		GFF1087	0.52	-1.4
1,091,718	-		GFF1087	0.53	+0.4
1,091,718	-		GFF1087	0.53	+0.4
1,091,718	-		GFF1087	0.53	-1.2
1,091,725	+		GFF1087	0.54	+1.4
1,091,732	+		GFF1087	0.55	+0.2
1,091,749	+		GFF1087	0.59	-0.7
1,091,752	+		GFF1087	0.60	-1.6
1,091,757	-		GFF1087	0.61	-1.4
1,091,764	-		GFF1087	0.62	+0.2
1,091,771	+		GFF1087	0.64	+0.6
1,091,771	+		GFF1087	0.64	+1.0
1,091,771	+		GFF1087	0.64	+1.3
1,091,771	+		GFF1087	0.64	-0.1
1,091,779	-		GFF1087	0.65	+0.5
1,091,779	-		GFF1087	0.65	+0.3
1,091,793	+		GFF1087	0.68	-1.0
1,091,801	-		GFF1087	0.70	-0.9
1,091,801	-		GFF1087	0.70	+0.0
1,091,813	+		GFF1087	0.73	-0.7
1,091,819	+		GFF1087	0.74	-1.6
1,091,821	-		GFF1087	0.74	+0.5
1,091,824	+		GFF1087	0.75	-0.6
1,091,825	+		GFF1087	0.75	+0.7
1,091,827	-		GFF1087	0.76	-2.6
1,091,827	-		GFF1087	0.76	-0.0
1,091,827	-		GFF1087	0.76	-0.1
1,091,827	-		GFF1087	0.76	-1.1
1,091,831	-		GFF1087	0.76	-2.6
1,091,845	-		GFF1087	0.79	-0.6
1,091,849	+		GFF1087	0.80	+0.6
1,091,854	+		GFF1087	0.81	-0.3
1,091,854	+		GFF1087	0.81	-0.3
1,091,854	+		GFF1087	0.81	-0.5
1,091,854	+		GFF1087	0.81	+0.8
1,091,854	+		GFF1087	0.81	-1.6
1,091,854	+		GFF1087	0.81	+0.9
1,091,854	+		GFF1087	0.81	-0.7
1,091,854	+		GFF1087	0.81	+0.5
1,091,862	-		GFF1087	0.83	+0.5
1,091,862	-		GFF1087	0.83	-0.9
1,091,862	-		GFF1087	0.83	-0.7
1,091,862	-		GFF1087	0.83	-1.4
1,091,862	-		GFF1087	0.83	-1.3
1,091,862	-		GFF1087	0.83	-0.4
1,091,864	-		GFF1087	0.83	-0.6
1,091,864	-		GFF1087	0.83	-1.0
1,091,873	+		GFF1087	0.85	-0.5
1,091,873	+		GFF1087	0.85	-0.3
1,091,873	+		GFF1087	0.85	-1.5
1,091,904	+				+0.8
1,091,904	+				+0.3
1,091,904	-				+1.1
1,091,912	-				-0.3
1,091,912	-				-0.7
1,091,912	-				-0.6
1,091,920	+				-0.1
1,091,926	+				-0.5
1,091,928	-				-1.2
1,091,928	-				-0.7
1,091,928	-				-2.7
1,091,928	-				-1.1
1,091,929	+				+0.6
1,091,929	+				-0.9
1,091,931	+				+0.6
1,091,937	-				+0.7
1,091,939	+				-2.2
1,091,946	+				-0.7
1,091,946	+				-0.8
1,091,946	+				-0.3
1,091,946	+				-1.4
1,091,946	+				-1.2
1,091,946	+				+0.0
1,091,946	+				-0.1
1,091,946	+				+0.5
1,091,946	+				-0.4
1,091,946	+				+0.3
1,091,946	+				+0.3
1,091,946	+				-0.3
1,091,946	+				+0.5
1,091,946	+				+0.5
1,091,946	+				+0.2
1,091,946	+				+0.5
1,091,946	+				+0.7
1,091,951	+				-1.6
1,091,954	-				+0.7
1,091,954	-				+1.1
1,091,954	-				-0.4
1,091,954	-				+1.0
1,091,954	-				-1.1
1,091,954	-				-0.1
1,091,954	-				+1.1
1,091,954	-				+0.2
1,091,954	-				-3.2
1,091,954	-				+1.0
1,091,954	-				+1.3
1,091,954	-				-0.8
1,091,954	-				+0.0
1,091,954	-				-1.5
1,091,954	-				+0.2
1,091,954	-				-0.0
1,091,954	-				-0.0
1,091,954	-				+0.0
1,091,954	-				-1.1
1,091,956	+				+0.5
1,091,956	+				-2.3
1,091,956	+				-1.6
1,091,964	-				+0.2
1,091,964	-				-1.4
1,091,971	-				+0.2
1,091,981	+				-1.7
1,091,982	+				+0.8
1,091,990	-				-1.4
1,092,006	+				-1.0
1,092,010	+				+0.3
1,092,010	+				-0.4
1,092,010	+				-0.5
1,092,014	-				-0.1
1,092,014	-				-0.0
1,092,018	-				+1.0
1,092,018	-				-0.3
1,092,018	-				+0.7
1,092,018	-				+0.1
1,092,018	-				-1.4
1,092,020	+				+0.3
1,092,024	-				-0.8
1,092,028	-				-1.0
1,092,028	-				+0.2
1,092,042	+		GFF1088	0.13	+0.2
1,092,051	-		GFF1088	0.17	+0.2
1,092,107	+		GFF1088	0.41	+0.2
1,092,115	-		GFF1088	0.45	-0.5
1,092,122	-		GFF1088	0.48	+0.6
1,092,130	-		GFF1088	0.51	+0.6
1,092,132	+		GFF1088	0.52	+1.3
1,092,132	+		GFF1088	0.52	-0.7
1,092,137	+		GFF1088	0.54	+1.1
1,092,137	+		GFF1088	0.54	-0.0
1,092,137	+		GFF1088	0.54	+0.2
1,092,140	-		GFF1088	0.56	+0.1
1,092,140	-		GFF1088	0.56	+0.9
1,092,145	-		GFF1088	0.58	+0.2
1,092,154	+		GFF1088	0.62	+0.4
1,092,154	+		GFF1088	0.62	+0.5
1,092,154	+		GFF1088	0.62	-0.6
1,092,155	-		GFF1088	0.62	+0.5
1,092,162	-		GFF1088	0.65	-1.8
1,092,165	+		GFF1088	0.67	-1.2
1,092,165	+		GFF1088	0.67	-0.6
1,092,173	-		GFF1088	0.70	-0.1
1,092,181	-		GFF1088	0.74	-0.5
1,092,183	-		GFF1088	0.75	-0.3
1,092,184	+		GFF1088	0.75	-3.0
1,092,197	+		GFF1088	0.81	+0.3
1,092,197	+		GFF1088	0.81	+0.1
1,092,200	-		GFF1088	0.82	+1.0
1,092,205	-		GFF1088	0.84	+0.4
1,092,209	+		GFF1088	0.86	-0.6
1,092,217	-		GFF1088	0.89	+0.5
1,092,227	-				+0.5
1,092,228	+				+0.9
1,092,236	-				-0.5
1,092,236	-				-0.2
1,092,236	-				+0.8
1,092,247	+				-0.9
1,092,247	+				+0.3
1,092,254	+				-0.5
1,092,254	+				-0.2
1,092,255	-				-0.6
1,092,255	-				-0.4
1,092,272	-				-0.3
1,092,282	-				+0.2
1,092,321	+		GFF1089	0.18	+0.6
1,092,326	+		GFF1089	0.19	-0.2
1,092,326	+		GFF1089	0.19	-1.5
1,092,331	+		GFF1089	0.20	+0.6
1,092,338	+		GFF1089	0.22	-0.0
1,092,373	+		GFF1089	0.29	-0.5
1,092,373	+		GFF1089	0.29	-2.1
1,092,395	+		GFF1089	0.34	-0.8
1,092,400	+		GFF1089	0.35	-1.0
1,092,400	+		GFF1089	0.35	-1.4
1,092,403	-		GFF1089	0.36	-0.8
1,092,403	-		GFF1089	0.36	-0.6
1,092,408	-		GFF1089	0.37	-0.6
1,092,408	-		GFF1089	0.37	-0.6
1,092,419	+		GFF1089	0.39	+1.2
1,092,424	+		GFF1089	0.40	+0.5
1,092,424	+		GFF1089	0.40	-0.2
1,092,424	+		GFF1089	0.40	-0.8
1,092,424	+		GFF1089	0.40	-0.4
1,092,424	+		GFF1089	0.40	+0.2
1,092,424	+		GFF1089	0.40	-0.7
1,092,424	+		GFF1089	0.40	+1.2
1,092,466	+		GFF1089	0.50	-0.4
1,092,486	+		GFF1089	0.54	-1.2
1,092,524	+		GFF1089	0.62	-0.2
1,092,544	+		GFF1089	0.66	+1.3
1,092,554	+		GFF1089	0.69	+0.0
1,092,566	-		GFF1089	0.71	-1.7
1,092,572	+		GFF1089	0.73	-1.1
1,092,572	+		GFF1089	0.73	-0.6
1,092,572	+		GFF1089	0.73	-0.1
1,092,572	+		GFF1089	0.73	+0.3
1,092,580	-		GFF1089	0.74	+1.3
1,092,580	-		GFF1089	0.74	+0.0
1,092,585	-		GFF1089	0.75	+0.0
1,092,614	+		GFF1089	0.82	-0.1
1,092,619	+		GFF1089	0.83	+0.6
1,092,619	+		GFF1089	0.83	-0.0
1,092,622	-		GFF1089	0.83	+0.1
1,092,625	-		GFF1089	0.84	+0.6
1,092,632	-		GFF1089	0.85	-0.1
1,092,639	+		GFF1089	0.87	-1.1
1,092,650	-		GFF1089	0.89	+0.3
1,092,651	+		GFF1089	0.90	-0.4
1,092,664	-				-1.8
1,092,698	+				+0.1
1,092,698	+				-0.2
1,092,703	-				-1.8
1,092,706	+				-0.9
1,092,706	+				+0.1
1,092,714	-				+0.3
1,092,714	-				+0.1
1,092,714	-				+1.6
1,092,716	+				-0.5
1,092,729	-				-1.8
1,092,731	+				-0.0
1,092,739	-				+0.7
1,092,739	-				-1.4
1,092,744	+				-1.4
1,092,752	-				+0.2
1,092,752	-				-1.8
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